Modularity-like objective function in annotated networks

Jia-Rong Xie, Bing-Hong Wang

Front. Phys. ›› 2017, Vol. 12 ›› Issue (6) : 128903.

PDF(2052 KB)
PDF(2052 KB)
Front. Phys. ›› 2017, Vol. 12 ›› Issue (6) : 128903. DOI: 10.1007/s11467-017-0657-y
RESEARCH ARTICLE
RESEARCH ARTICLE

Modularity-like objective function in annotated networks

Author information +
History +

Abstract

We ascertain the modularity-like objective function whose optimization is equivalent to the maximum likelihood in annotated networks. We demonstrate that the modularity-like objective function is a linear combination of modularity and conditional entropy. In contrast with statistical inference methods, in our method, the influence of the metadata is adjustable; when its influence is strong enough, the metadata can be recovered. Conversely, when it is weak, the detection may correspond to another partition. Between the two, there is a transition. This paper provides a concept for expanding the scope of modularity methods.

Keywords

community structure / annotated networks / modularity / objective function

Cite this article

Download citation ▾
Jia-Rong Xie, Bing-Hong Wang. Modularity-like objective function in annotated networks. Front. Phys., 2017, 12(6): 128903 https://doi.org/10.1007/s11467-017-0657-y

References

[1]
S. Fortunato, Community detection in graphs, Phys. Rep. 486(3–5), 75 (2010)
CrossRef ADS Google scholar
[2]
M. E. J. Newman, Communities, modules and largescale structure in networks, Nat. Phys. 8(1), 25 (2011)
[3]
S. Fortunato and D. Hric, Community detection in networks: A user guide, Phys. Rep. 659, 1 (2016)
CrossRef ADS Google scholar
[4]
A. Decelle, F. Krzakala, C. Moore, and L. Zdeborová, Inference and phase transitions in the detection of modules in sparse networks, Phys. Rev. Lett. 107(6), 065701 (2011)
CrossRef ADS Google scholar
[5]
A. Decelle, F. Krzakala, C. Moore, and L. Zdeborová, Asymptotic analysis of the stochastic block model for modular networks and its algorithmic applications, Phys. Rev. E 84(6), 066106 (2011)
CrossRef ADS Google scholar
[6]
B. Karrer and M. E. J. Newman, Stochastic blockmodels and community structure in networks, Phys. Rev. E 83(1), 016107 (2011)
CrossRef ADS Google scholar
[7]
M. E. J. Newman and M. Girvan, Finding and evaluating community structure in networks, Phys. Rev. E 69(2), 026113 (2004)
CrossRef ADS Google scholar
[8]
M. E. J. Newman and T. Peixoto, Generalized communities in networks,Phys. Rev. Lett. 115(8), 088701 (2015)
CrossRef ADS Google scholar
[9]
M. E. J. Newman and G. Reinert, Estimating the number of communities in a network, Phys. Rev. Lett. 117(7), 078301 (2016)
CrossRef ADS Google scholar
[10]
M. E. J. Newman and A. Clauset, Structure and inference in annotated networks, Nat. Commum. 7, 11863 (2016)
CrossRef ADS Google scholar
[11]
M. E. J. Newman, Analysis of weighted networks, Phys. Rev. E 70(5), 056131 (2004)
CrossRef ADS Google scholar
[12]
E. A. Leicht and M. E. J. Newman, Community structure in directed networks, Phys. Rev. Lett. 100(11), 118703 (2008)
CrossRef ADS Google scholar
[13]
M. J. Barber, Modularity and community detection in bipartite networks, Phys. Rev. E 76(6), 066102 (2007)
CrossRef ADS Google scholar
[14]
P. J. Mucha, T. Richardson, K. Macon, M. A. Porter, and J. P. Onnela, Community structure in timedependent, multiscale, and multiplex networks, Science 328(5980), 876 (2010)
CrossRef ADS Google scholar
[15]
P. Zhang and C. Moore, Scalable detection of statistically significant communities and hierarchies, using message passing for modularity, Proc. Natl. Acad. Sci. USA 111(51), 18144 (2014)
CrossRef ADS Google scholar
[16]
M. E. J. Newman, Equivalence between modularity optimization and maximum likelihood methods for community detection, Phys. Rev. E 94(5), 052315 (2016)
CrossRef ADS Google scholar
[17]
A. Condon and R. M. Karp, Algorithms for graph partitioning on the planted partition model, Random Structures Algorithms 18(2), 116 (2001)
CrossRef ADS Google scholar
[18]
R. Guimerà, M. Sales-Pardo, and L. A. N. Amaral, Modularity from fluctuations in random graphs and complex networks, Phys. Rev. E 70, 025101(R) (2004)
[19]
T. P. Peixoto, Hierarchical block structures and highresolution model selection in large networks, Phys. Rev. X 4(1), 011047 (2014)
CrossRef ADS Google scholar
[20]
B. H. Good, Y. A. de Montjoye, and A. Clauset, Performance of modularity maximization in practical contexts, Phys. Rev. E 81(4), 046106 (2010)
CrossRef ADS Google scholar
[21]
This research uses data from Add Health, a program project directed by K. M. Harris and designed by J. R. Udry, P. S. Bearman, and K. M. Harris at the University of North Carolina at Chapel Hill, and funded by grant P01-HD31921 from the Eunice Kennedy Shriver National Institute of Child Health and Human Development, with cooperative funding from 23 other federal agencies and foundations. Special acknowledgment is dueR. R. Rindfuss and B. Entwisle for assistance in the original design. Information on how to obtain the Add Health data files is available on the Add Health website (http://www.cpc.unc.edu/addhealth). No direct support was received from grant P01-HD31921 for this analysis.
[22]
M. Bastian, S. Heymann, and M. Jacomy, Gephi: An open source software for exploring and manipulating networks, in: International AAAI Conference on Weblogs and Social Media, 2009
[23]
M. Jacomy, T. Venturini, S. Heymann, and M. Bastian, ForceAtlas2, a continuous graph layout algorithm for handy network visualization designed for the Gephi software, PLoS One 9(6), e98679 (2014)
CrossRef ADS Google scholar
[24]
L. Danon, A. Díaz-Guilera, J. Duch, and A. Arenas, Comparing community structure identification, J. Stat. Mech. 09, P09008 (2005)
CrossRef ADS Google scholar

RIGHTS & PERMISSIONS

2017 Higher Education Press and Springer-Verlag Berlin Heidelberg
AI Summary AI Mindmap
PDF(2052 KB)

Accesses

Citations

Detail

Sections
Recommended

/