A complete genome for a commercial duck

Jim KAUFMAN

PDF(360 KB)
PDF(360 KB)
Front. Agr. Sci. Eng. ›› 2024, Vol. 11 ›› Issue (2) : 344-346. DOI: 10.15302/J-FASE-2024557
COMMENTS

A complete genome for a commercial duck

Author information +
History +

Cite this article

Download citation ▾
Jim KAUFMAN. A complete genome for a commercial duck. Front. Agr. Sci. Eng., 2024, 11(2): 344‒346 https://doi.org/10.15302/J-FASE-2024557

References

[1]
Wolf S M, Green R C. Return of results in genomic research using large-scale or whole genome sequencing: toward a new normal. Annual Review of Genomics and Human Genetics, 2023, 24(1): 393–414
CrossRef Google scholar
[2]
Damas J, Corbo M, Lewin H A. Vertebrate chromosome evolution. Annual Review of Animal Biosciences, 2021, 9(1): 1–27
CrossRef Google scholar
[3]
Deng Y, Finck A, Fan R. Single-cell omics analyses enabled by microchip technologies. Annual Review of Biomedical Engineering, 2019, 21(1): 365–393
CrossRef Google scholar
[4]
Fischer H P. Towards quantitative biology: integration of biological information to elucidate disease pathways and to guide drug discovery. Biotechnology Annual Review, 2005, 11: 1–68
CrossRef Google scholar
[5]
Nelson C E, Gersbach C A. Engineering delivery vehicles for genome editing. Annual Review of Chemical and Biomolecular Engineering, 2016, 7(1): 637–662
CrossRef Google scholar
[6]
Holtzman L, Gersbach C A. Editing the epigenome: reshaping the genomic landscape. Annual Review of Genomics and Human Genetics, 2018, 19(1): 43–71
CrossRef Google scholar
[7]
Berry D P, Spangler M L. Animal board invited review: practical applications of genomic information in livestock. Animal, 2023, 17(11): 100996
CrossRef Google scholar
[8]
Goddard M E, Hayes B J. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nature Reviews. Genetics, 2009, 10(6): 381–391
CrossRef Google scholar
[9]
Bekele R, Taye M, Abebe G, Meseret S. Genomic regions and candidate genes associated with milk production traits in holstein and its crossbred cattle: a review. International Journal of Genomics, 2023, 2023: 8497453
CrossRef Google scholar
[10]
Narayana S G, de Jong E, Schenkel F S, Fonseca P A S, Chud T C S, Powell D, Wachoski-Dark G, Ronksley P E, Miglior F, Orsel K, Barkema H W. Underlying genetic architecture of resistance to mastitis in dairy cattle: a systematic review and gene prioritization analysis of genome-wide association studies. Journal of Dairy Science, 2023, 106(1): 323–351
CrossRef Google scholar
[11]
Smith J, Alfieri J M, Anthony N, Arensburger P, Athrey G N, Balacco J, Balic A, Bardou P, Barela P, Bigot Y, Blackmon H, Borodin P M, Carroll R, Casono M C, Charles M, Cheng H, Chiodi M, Cigan L, Coghill L M, Crooijmans R, Das N, Davey S, Davidian A, Degalez F, Dekkers J M, Derks M, Diack A B, Djikeng A, Drechsler Y, Dyomin A, Fedrigo O, Fiddaman S R, Formenti G, Frantz L A F, Fulton J E, Gaginskaya E, Galkina S, Gallardo R A, Geibel J, Gheyas A A, Godinez C J P, Goodell A, Graves J A M, Griffin D K, Haase B, Han J L, Hanotte O, Henderson L J, Hou Z C, Howe K, Huynh L, Ilatsia E, Jarvis E D, Johnson S M, Kaufman J, Kelly T, Kemp S, Kern C, Keroack J H, Klopp C, Lagarrigue S, Lamont S J, Lange M, Lanke A, Larkin D M, Larson G, Layos J K N, Lebrasseur O, Malinovskaya L P, Martin R J, Martin Cerezo M L, Mason A S, McCarthy F M, McGrew M J, Mountcastle J, Muhonja C K, Muir W, Muret K, Murphy T D, Ng’ang’a I, Nishibori M, O’Connor R E, Ogugo M, Okimoto R, Ouko O, Patel H R, Perini F, Pigozzi M I, Potter K C, Price P D, Reimer C, Rice E S, Rocos N, Rogers T F, Saelao P, Schauer J, Schnabel R D, Schneider V A, Simianer H, Smith A, Stevens M P, Stiers K, Tiambo C K, Tixier-Boichard M, Torgasheva A A, Tracey A, Tregaskes C A, Vervelde L, Wang Y, Warren W C, Waters P D, Webb D, Weigend S, Wolc A, Wright A E, Wright D, Wu Z, Yamagata M, Yang C, Yin Z T, Young M C, Zhang G, Zhao B, Zhou H. Fourth report on chicken genes and chromosomes. Cytogenetic and Genome Research, 2022, 162(8–9): 405–528
CrossRef Google scholar
[12]
Suminda G G D, Ghosh M, Son Y O. The innovative informatics approaches of high-throughput technologies in livestock: spearheading the sustainability and resiliency of agrigenomics research. Life, 2022, 12(11): 1893
CrossRef Google scholar
[13]
Dehau T, Ducatelle R, van Immerseel F, Goossens E. Omics technologies in poultry health and productivity—Part 1: current use in poultry research. Avian Pathology, 2022, 51(5): 407–417
CrossRef Google scholar
[14]
Rieblinger B, Sid H, Duda D, Bozoglu T, Klinger R, Schlickenrieder A, Lengyel K, Flisikowski K, Flisikowska T, Simm N, Grodziecki A, Perleberg C, Bähr A, Carrier L, Kurome M, Zakhartchenko V, Kessler B, Wolf E, Kettler L, Luksch H, Hagag I T, Wise D, Kaufman J, Kaufer B B, Kupatt C, Schnieke A, Schusser B. Cas9-expressing chickens and pigs as resources for genome editing in livestock. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118(10): e2022562118
CrossRef Google scholar
[15]
Kim J K, Negovetich N J, Forrest H L, Webster R G. Ducks: the “Trojan horses” of H5N1 influenza. Influenza and Other Respiratory Viruses, 2009, 3(4): 121–128
CrossRef Google scholar
[16]
Chmielewski R, Swayne D E. Avian influenza: public health and food safety concerns. Annual Review of Food Science and Technology, 2011, 2(1): 37–57
CrossRef Google scholar
[17]
Funk A, Mhamdi M, Will H, Sirma H. Avian hepatitis B viruses: molecular and cellular biology, phylogenesis, and host tropism. World Journal of Gastroenterology, 2007, 13(1): 91–103
CrossRef Google scholar
[18]
Dhama K, Kumar N, Saminathan M, Tiwari R, Karthik K, Kumar M A, Palanivelu M, Shabbir M Z, Malik Y S, Singh R K. Duck virus enteritis (duck plague)—A comprehensive update. Veterinary Quarterly, 2017, 37(1): 57–80
CrossRef Google scholar
[19]
Cui Y, Pan Y, Guo J, Wang D, Tong X, Wang Y, Li J, Zhao J, Ji Y, Wu Z, Zeng P, Zhou J, Feng X, Hou L, Liu J. The evolution, genomic epidemiology, and transmission dynamics of Tembusu virus. Viruses, 2022, 14(6): 1236
CrossRef Google scholar
[20]
Jafari S, Ebrahimi M, Luangtongkum T. The worldwide trend of Campylobacter spp., infection from duck-related isolates and associated phenotypic and genotypic antibiotic resistance, since 1985: identifying opportunities and challenges for prevention and control. Poultry Science, 2021, 100(8): 101213
CrossRef Google scholar
[21]
Cai Q, Li Y, Chang Y F, Tang Z, Zhang H, Xie Q. Pasteurella multocida causes liver injury in ducks by mediating inflammatory, apoptotic and autophagic pathways. Microbial Pathogenesis, 2023, 184: 106336
CrossRef Google scholar
[22]
Hu J, Song L, Ning M, Niu X, Han M, Gao C, Feng X, Cai H, Li T, Li F, Li H, Gong D, Song W, Liu L, Pu J, Liu J, Smith J, Sun H, Huang Y. A new chromosome-scale duck genome shows a major histocompatibility complex with several expanded multigene families. BMC Biology, 2024, 22(1): 31
CrossRef Google scholar
[23]
Trowsdale J, Knight J C. Major histocompatibility complex genomics and human disease. Annual Review of Genomics and Human Genetics, 2013, 14(1): 301–323
CrossRef Google scholar
[24]
Kaufman J. Unfinished business: evolution of the MHC and the adaptive immune system of jawed vertebrates. Annual Review of Immunology, 2018, 36(1): 383–409
CrossRef Google scholar
[25]
Kaufman J. Generalists and specialists: a new view of how MHC class I molecules fight infectious pathogens. Trends in Immunology, 2018, 39(5): 367–379
CrossRef Google scholar
[26]
He K, Liang C H, Zhu Y, Dunn P, Zhao A, Minias P. Reconstructing macroevolutionary patterns in avian MHC architecture with genomic data. Frontiers in Genetics, 2022, 13: 823686
CrossRef Google scholar

Acknowledgements

This work was supported by the Deutsche Forschungsgemeinschaft in the framework of the Research Unit ImmunoChick (FOR5130) through the project KA 5564/1-1 awarded to JK.

Compliance with ethics guidelines

Jim Kaufman declare that there has no conflicts of interest or financial conflicts to disclose. This article does not contain any studies with human or animal subjects performed by the author.

RIGHTS & PERMISSIONS

The Author(s) 2024. Published by Higher Education Press. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0)
AI Summary AI Mindmap
PDF(360 KB)

Accesses

Citations

Detail

Sections
Recommended

/