Isolating higher yielding and more stable rice genotypes in stress environments: fine-tuning a selection method using production and resilience score indices
Arnauld THIRY, William J. DAVIES, Ian C. DODD
Isolating higher yielding and more stable rice genotypes in stress environments: fine-tuning a selection method using production and resilience score indices
● Score index methods readily discriminate genotypes adapted to a target environment.
● New quantitative method evaluated productivity and resilience of rice genotypes.
● Method identified A genotypes (high productivity and resilience) of Fernandez (1992).
● Method identified genotypes better adapted to reduced soil water conditions.
● Method can enhance rice sustainability (high productivity, low water use).
In Asia, the rice crop sustains millions of people. However, growing demand for this crop needs to be met while simultaneously reducing its water consumption to cope with the effects of climate change. Lowland cropping systems are the most common and productive but have particularly high water requirements. High-yielding rice genotypes adapted to drier environments (such as rainfed or aerobic rice ecosystems) are needed to increase the water use efficiency of cropping. Identifying these genotypes requires fast and more accurate selection methods. It is hypothesized that applying a new quantitative selection method (the score index selection method), can usefully compare rice yield responses over different years and stress intensities to select genotypes more rapidly and efficiently. Applying the score index to previously published rice yield data for 39 genotypes grown in no-stress and two stress environments, identified three genotypes (ARB 8, IR55419-04 and ARB 7) with higher and stable yield under moderate to severe stress conditions. These genotypes are postulated to be better adapted to stress environment such as upland and aerobic environments. Importantly, the score index selection method offers improved precision than the conventional breeding selection method in identifying genotypes that are well-suited to a range of stress levels within the target environment.
Aerobic rice / breeding selection / drought resilience / production capacity index / resilience capacity index / stress score index / upland
[1] |
Fukagawa N K, Ziska L H. Rice: importance for global nutrition. Journal of Nutritional Science and Vitaminology, 2019, 65(Supplement): S2–S3
CrossRef
Google scholar
|
[2] |
Deveshwar P, Prusty A, Sharma S, Tyagi A K. Phytohormone-mediated molecular mechanisms involving multiple genes and QTL govern grain number in rice. Frontiers in Genetics, 2020, 11: 586462
CrossRef
Google scholar
|
[3] |
Atlas Big. World rice production by country. Atlas Big. Available at Atlas Big website on August 15, 2022
|
[4] |
Kato Y, Katsura K. Rice adaptation to aerobic soils: physiological considerations and implications for agronomy. Plant Production Science, 2014, 17(1): 1–12
CrossRef
Google scholar
|
[5] |
Gao L, Gao Q, Lorenc M. Comparison of total factor productivity of rice in China and Japan. Sustainability, 2022, 14(12): 7407
CrossRef
Google scholar
|
[6] |
Becker M, Angulo C. The evolution of lowland rice-based production systems in Asia: historic trends, determinants of change, future perspective. Advances in Agronomy, 2019, 157: 293–327
CrossRef
Google scholar
|
[7] |
Khanna A, Anumalla M, Catolos M, Bartholomé J, Fritsche-Neto R, Platten J D, Pisano D J, Gulles A, Sta Cruz M T, Ramos J, Faustino G, Bhosale S, Hussain W. Genetic trends estimation in IRRIs rice drought breeding program and identification of high yielding drought-tolerant lines. Rice, 2022, 15(1): 14
CrossRef
Google scholar
|
[8] |
Dar M H, Bano D A, Waza S A, Zaidi N W, Majid A, Shikari A B, Ahangar M A, Hossain M, Kumar A, Singh U S. Abiotic stress tolerance-progress and pathways of sustainable rice production. Sustainability, 2021, 13(4): 2078
CrossRef
Google scholar
|
[9] |
Kornhuber K, Lesk C, Schleussner C F, Jägermeyr J, Pfleiderer P, Horton R M. Risks of synchronized low yields are underestimated in climate and crop model projections. Nature Communications, 2023, 14(1): 3528
CrossRef
Google scholar
|
[10] |
Jana K, Karmakar R, Banerjee S, Sana M, Goswami S, Puste A M. Aerobic rice cultivation system: eco-friendly and water saving technology under changed climate. Agricultural Research & Technology, 2018, 13(2): 555878
|
[11] |
Xia H, Luo Z, Xiong J, Ma X, Lou Q, Wei H, Qiu J, Yang H, Liu G, Fan L, Chen L, Luo L. Bi-directional selection in upland rice leads to its adaptive differentiation from lowland rice in drought resistance and productivity. Molecular Plant, 2019, 12(2): 170–184
CrossRef
Google scholar
|
[12] |
Saito K, Asai H, Zhao D, Laborte A G, Grenier C. Progress in varietal improvement for increasing upland rice productivity in the tropics. Plant Production Science, 2018, 21(3): 145–158
CrossRef
Google scholar
|
[13] |
Bautista R C, Counce P A. An overview of rice and rice quality. Cereal Foods World, 2020, 65(5): 52
|
[14] |
Subedi N, Poudel S. Alternate wetting and drying technique and its impacts on rice production. Tropical Agrobiodiversity, 2021, 2(1): 1–6
|
[15] |
Esmaeilzadeh-Moridani M, Esfahani M, Aalami A, Moumeni A, Khaledian M. Profiling the physiological response of upland and lowland rice (Oryza sativa L.) genotypes to water deficit. Journal of Crop Science and Biotechnology, 2022, 25(3): 289–300
CrossRef
Google scholar
|
[16] |
Lal B, Nayak A K, Gautam P, Tripathi R, Singh T, Katara J L. Aerobic rice: a water saving approach for rice production. Popular Kheti, 2013, 1(2): 1–4
|
[17] |
Vijayaraghavareddy P, Yin X, Struik P C, Makarla U, Sreeman S. Responses of lowland, upland and aerobic rice genotypes to water limitation during different phases. Rice Science, 2020, 27(4): 345–354
CrossRef
Google scholar
|
[18] |
Sabar M, Shabir G, Shah S M, Aslam K, Naveed S A, Arif M. Identification and mapping of QTLs associated with drought tolerance traits in rice by a cross between super Basmati and IR55419–04. Breeding Science, 2019, 69(1): 169–178
CrossRef
Google scholar
|
[19] |
Xia H, Xiong J, Tao T, Zheng X, Huang W, Li J J, Chen L, Luo L. Distinguishing upland and lowland rice ecotypes by selective SSRs and their applications in molecular-assisted selection of rice drought resistance. Euphytica, 2015, 206(1): 11–20
CrossRef
Google scholar
|
[20] |
Tsenov N, Gubatov T, Raykov G, Ivanova A, Chamurliiski P. New approaches for evaluation the grain yield of winter wheat. International Journal of Current Research, 2017, 9(1): 44487–44495
|
[21] |
Fischer R A, Maurer R. Drought resistance in spring wheat cultivars. I. Grain yield responses. Australian Journal of Agricultural Research, 1978, 29(5): 897–912
CrossRef
Google scholar
|
[22] |
Thiry A A, Chavez Dulanto P N, Reynolds M P, Davies W J. How can we improve crop genotypes to increase stress resilience and productivity in a future climate? A new crop screening method based on productivity and resistance to abiotic stress. Journal of Experimental Botany, 2016, 67(19): 5593–5603
CrossRef
Google scholar
|
[23] |
Ramirez-Vallejo P, Kelly J D. Traits related to drought resistance in common bean. Euphytica, 1998, 99(2): 127–136
CrossRef
Google scholar
|
[24] |
Khodarahmpour Z, Choukan R, Bihamta M R, Hervan E M. Determination of the best heat stress tolerance indices in maize (Zea mays L.) inbred lines and hybrids under Khuzestan Province conditions. Journal of Agricultural Science and Technology, 2011, 13(1): 111–121
|
[25] |
Parthasarathi T, Vanitha K, Lakshamanakumar P, Kalaiyarasi D. Aerobic rice-mitigating water stress for the future climate change. International Journal of Agronomy and Plant Production, 2012, 3(7): 241–254
|
[26] |
Raman A, Verulkar S, Mandal N, Variar M, Shukla V, Dwivedi J, Singh B, Singh O, Swain P, Mall A, Robin S, Chandrababu R, Jain A, Ram T, Hittalmani S, Haefele S, Piepho H P, Kumar A. Drought yield index to select high yielding rice lines under different drought stress severities. Rice, 2012, 5(1): 31
CrossRef
Google scholar
|
[27] |
Rosielle A A, Hamblin J. Theoretical aspects of selection for yield in stress and non-stress environments. Crop Science, 1981, 21(6): 943–946
CrossRef
Google scholar
|
[28] |
Fernandez G C J. Effective selection criteria for assessing plant stress tolerance. In: Kou C G, ed. Adaptation of Food Crops to Temperature and Water Stress. Tainan, China: Shanhua, Taiwan AVRDC, 1992, 257–270
|
[29] |
Verulkar S B, Mandal N P, Dwivedi J L, Singh B N, Sinha P K, Mahato R N, Dongre P, Singh O N, Bose L K, Swain P, Robin S, Chandrababu R, Senthil S, Jain A, Shashidhar H E, Hittalmani S, Vera Cruz C, Paris T, Raman A, Haefele S, Serraj R, Atlin G, Kumar A. Breeding resilient and productive genotypes adapted to drought-prone rainfed ecosystem of India. Field Crops Research, 2010, 117(2–3): 197–208
CrossRef
Google scholar
|
[30] |
R Core Team. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing, 2021. Available at R-project website on August 15, 2022
|
[31] |
Blum A. Yield potential and drought resistance: are they mutually exclusive? In: Reynolds M P, Rajaram S, McNab A, eds. Increasing Yield Potential in Wheat: Breaking the Barriers. Mexico: CIMMYT, 1996, 90–100
|
[32] |
Fatima Z, Ahmed M, Hussain M, Abbas G, Ul-Allah S, Ahmad S, Ahmed N, Ali M A, Sarwar G, Haque E U, Iqbal P, Hussain S. The fingerprints of climate warming on cereal crops phenology and adaptation options. Scientific Reports, 2020, 10(1): 18013
CrossRef
Google scholar
|
[33] |
Khatoon S, Majid S A, Bibi A, Javed G, Anila U. Yield stability evaluation of wheat (Triticum aestivum L.) cultivated on different environments of district Poonch (AJK) Pakistan based upon water-related parameters. International Journal of Agronomy and Agricultural Research, 2016, 8(4): 11−21
|
[34] |
Reckling M, Ahrends H, Chen T W, Eugster W, Hadasch S, Knapp S, Laidig F, Linstädter A, Macholdt J, Piepho H P, Schiffers K, Döring T F. Methods of yield stability analysis in long-term field experiments. A review. Agronomy for Sustainable Development, 2021, 41(2): 27
CrossRef
Google scholar
|
[35] |
Dixit S, Singh A, Sandhu N, Bhandari A, Vikram P, Kumar A. Combining drought and submergence tolerance in rice: marker-assisted breeding and QTL combination effects. Molecular Breeding, 2017, 37(12): 143
CrossRef
Google scholar
|
[36] |
Dixit S, Singh A, Sta Cruz M T, Maturan P T, Amante M, Kumar A. Multiple major QTL lead to stable yield performance of rice cultivars across varying drought intensities. BMC Genetics, 2014, 15(1): 16
CrossRef
Google scholar
|
[37] |
Utharasu S, Anandakumar C R. Heterosis and combining ability analysis for grain yield and its component traits in aerobic rice (Oryza sativa L.) cultivars. Electronic Journal of Plant Breeding, 2013, 4(4): 1271–1279
|
[38] |
Swain P, Raman A, Singh S P, Kumar A. Breeding drought tolerant rice for shallow rainfed ecosystem of eastern India. Field Crops Research, 2017, 209: 168–178
CrossRef
Google scholar
|
[39] |
Shen J, Zhu Q, Jiao X, Ying H, Wang H, Wen X, Xu W, Li T, Cong W, Liu X, Hou Y, Cui Z, Oenema O, Davies W J, Zhang F. Agriculture Green Development: a model for China and the world. Frontiers of Agricultural Science and Engineering, 2020, 7(1): 5–13
CrossRef
Google scholar
|
[40] |
Zhu Y, Wang Z, Zhu X. New reflections on food security and land use strategies based on the evolution of Chinese dietary patterns. Land Use Policy, 2023, 126: 106520
CrossRef
Google scholar
|
/
〈 | 〉 |