Distribution of Bacterial Communities in Petroleum-Contaminated Soils from the Dagang Oilfield, China

Xueke Feng , Zhen Liu , Xiaoqiang Jia , Wenyu Lu

Transactions of Tianjin University ›› 2020, Vol. 26 ›› Issue (1) : 22 -32.

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Transactions of Tianjin University ›› 2020, Vol. 26 ›› Issue (1) : 22 -32. DOI: 10.1007/s12209-019-00226-7
Research Article

Distribution of Bacterial Communities in Petroleum-Contaminated Soils from the Dagang Oilfield, China

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Abstract

Diversity in bacterial communities was investigated along a petroleum hydrocarbon content gradient (0–0.4043 g/g) in surface (5–10 cm) and subsurface (35–40 cm) petroleum-contaminated soil samples from the Dagang Oilfield, China. Using 16S rRNA Illumina high-throughput sequencing technology and several statistical methods, the bacterial diversity of the soil was studied. Subsequently, the environmental parameters were measured to analyze its relationship with the community variation. Nonmetric multidimensional scaling and analysis of similarities indicated a significant difference in the structure of the bacterial community between the nonpetroleum-contaminated surface and subsurface soils, but no differences were observed in different depths of petroleum-contaminated soil. Meanwhile, many significant correlations were obtained between diversity in soil bacterial community and physicochemical properties. Total petroleum hydrocarbon, total organic carbon, and total nitrogen were the three important factors that had the greatest impacts on the bacterial community distribution in the long-term petroleum-contaminated soils. Our research has provided references for the bacterial community distribution along a petroleum gradient in both surface and subsurface petroleum-contaminated soils of oilfield areas.

Keywords

Petroleum-contaminated soil / Dagang Oilfield / Bacterial community diversity / 16s rRNA Illumina sequencing / Environmental factor correlation analysis

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Xueke Feng, Zhen Liu, Xiaoqiang Jia, Wenyu Lu. Distribution of Bacterial Communities in Petroleum-Contaminated Soils from the Dagang Oilfield, China. Transactions of Tianjin University, 2020, 26(1): 22-32 DOI:10.1007/s12209-019-00226-7

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References

[1]

Lee EH, Lee SH, Cho KS. Bacterial diversity dynamics in a long-term petroleum-contaminated soil. J Environ Sci Health Part A, 2011, 46(3): 281-290.

[2]

Klironomos JN, McCune J, Hart M, et al. The influence of arbuscular mycorrhizae on the relationship between plant diversity and productivity. Ecol Lett, 2000, 3(2): 137-141.

[3]

Liu J, Song XY, Sun RL, et al. Petroleum pollution and the microbial community structure in the soil of Shengli Oilfield. Chin J Appl Ecol, 2014, 25(3): 850-856 (in Chinese)

[4]

Ahmed OE, Eldesoky AM, El Nady MM. The use of polycyclic aromatic in the assessment of marine life and the impact on petroleum pollution in the Suez Gulf, Egypt. Pet Sci Technol, 2019, 37(12): 1400-1409.

[5]

Rocha LL, Colares GB, Nogueira VLR, et al. Distinct habitats select particular bacterial communities in mangrove sediments. Int J Microbiol, 2016, 2016: 1-6.

[6]

Hong Q, Dong XJ, He LJ, et al. Isolation of a biphenyl-degrading Bacterium, Achromobacter sp. BP3, and cloning of the bph gene cluster. Int Biodeterior Biodegrad, 2009, 63(4): 365-370.

[7]

Sood N, Lal B. Isolation of a novel yeast strain Candida digboiensis TERI ASN6 capable of degrading petroleum hydrocarbons in acidic conditions. J Environ Manag, 2009, 90(5): 1728-1736.

[8]

Ueno A, Ito Y, Yumoto I, et al. Isolation and characterization of bacteria from soil contaminated with diesel oil and the possible use of these in autochthonous bioaugmentation. World J Microbiol Biotechnol, 2007, 23(12): 1739-1745.

[9]

Li YX, Xu Y, Liu LL, et al. Five new amicoumacins isolated from a marine-derived Bacterium bacillus subtilis. Mar Drugs, 2012, 10(12): 319-328.

[10]

Hay ID, Lithgow T. Filamentous phages: masters of a microbial sharing economy. EMBO Rep, 2019, 20(6): e47427

[11]

Villanueva L, Navarrete A, Urmeneta J, et al. Analysis of diurnal and vertical microbial diversity of a hypersaline microbial mat. Arch Microbiol, 2007, 188(2): 137-146.

[12]

Xu HR, Luo YH, Chen C, et al. 3D shallow structures in the Baogutu area, Karamay, determined by eikonal tomography of short-period ambient noise surface waves. J Appl Geophys, 2016, 129: 101-110.

[13]

Gao YC, Wang JN, Guo SH, et al. Effects of salinization and crude oil contamination on soil bacterial community structure in the Yellow River Delta region, China. Appl Soil Ecol, 2015, 86: 165-173.

[14]

Abed RMM, Al-Kindi S, Al-Kharusi S. Diversity of bacterial communities along a petroleum contamination gradient in desert soils. Microb Ecol, 2015, 69(1): 95-105.

[15]

He LF, Xiang XY, Zhang RP, et al. Simultaneous determination of polycyclic aromatic hydrocarbons in soil by way of supersonic extraction and synchronous fluorescence spectrometry. J Saf Environ, 2011, 11(5): 103-108 (in Chinese)

[16]

Zheng J, Feng JQ, Zhou L, et al. Characterization of bacterial composition and diversity in a long-term petroleum contaminated soil and isolation of high-efficiency alkane-degrading strains using an improved medium. World J Microbiol Biotechnol, 2018, 34(2): 34

[17]

Wang X, Han Z, Bai Z, et al. Archaeal community structure along a gradient of petroleum contamination in saline-alkali soil. J Environ Sci, 2011, 23(11): 1858-1864.

[18]

Jones CM, Thies JE. Soil microbial community analysis using two-dimensional polyacrylamide gel electrophoresis of the bacterial ribosomal internal transcribed spacer regions. J Microbiol Methods, 2007, 69(2): 256-267.

[19]

Choe M, Hong SJ, Lim JH, et al. Korean paddy soil microbial community analysis method using denaturing gradient gel electrophoresis. J Appl Biol Chem, 2013, 56(2): 95-100.

[20]

Sutton NB, Maphosa F, Morillo JA, et al. Impact of long-term diesel contamination on soil microbial community structure. Appl Environ Microbiol, 2013, 79(2): 619-630.

[21]

Hazen TC, Dubinsky EA, de Santis TZ, et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science, 2010, 330(6001): 204-208.

[22]

Yakimov MM, Timmis KN, Golyshin PN. Obligate oil-degrading marine bacteria. Curr Opin Biotechnol, 2007, 18(3): 257-266.

[23]

Head IM, Jones DM, Röling WFM. Marine microorganisms make a meal of oil. Nat Rev Microbiol, 2006, 4(3): 173-182.

[24]

Icoz I, Stotzky G. Fate and effects of insect-resistant crops in soil ecosystems. Soil Biol Biochem, 2008, 40(3): 559-586.

[25]

Leahy JG, Colwell RR. Microbial degradation of hydrocarbons in the environment. Microbiol Rev, 1990, 54(3): 305-315.

[26]

Xia WJ, Shen WJ, Yu L, et al. Conversion of petroleum to methane by the indigenous methanogenic consortia for oil recovery in heavy oil reservoir. Appl Energy, 2016, 171: 646-655.

[27]

Dunfield PF, Yuryev A, Senin P, et al. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature, 2007, 450(7171): 879-882.

[28]

da Silva DKA, Coutinho FP, Escobar IEC, et al. The community of arbuscular mycorrhizal fungi in natural and revegetated coastal areas (Atlantic Forest) in northeastern Brazil. Biodivers Conserv, 2015, 24: 2213-2226.

[29]

Fang D, Zhao G, Xu X, et al. Microbial community structures and functions of wastewater treatment systems in plateau and cold regions. Bioresour Technol, 2018, 249: 684-693.

[30]

Ward DM, Atlas RM, Boehm PD, et al. Microbial biodegradation and chemical evolution of oil from the amoco spill. Ambio, 1980, 9(6): 277-283.

[31]

Nakatsu CH. Soil microbial community analysis using denaturing gradient gel electrophoresis. Soil Sci Soc Am J, 2007, 71(2): 562-571.

[32]

Green SJ, Leigh MB, Neufeld JD. McGenity TJ, Timmis KN, Nogales B. Denaturing gradient gel electrophoresis (DGGE) for microbial community analysis. Hydrocarbon and lipid microbiology protocols, 2015, Berlin: Springer 77-99.

[33]

Wilson SC, Jones KC. Bioremediation of soil contaminated with polynuclear aromatic hydrocarbons (PAHs): a review. Environ Pollut, 1993, 81(3): 229-249.

[34]

Margesin R, Hämmerle M, Tscherko D. Microbial activity and community composition during bioremediation of diesel-oil-contaminated soil: effects of hydrocarbon concentration, fertilizers, and incubation time. Microb Ecol, 2007, 53(2): 259-269.

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