Research progress and prospects of complete ammonia oxidizing bacteria in wastewater treatment

Shaoping Luo, Yi Peng, Ying Liu, Yongzhen Peng

PDF(1061 KB)
PDF(1061 KB)
Front. Environ. Sci. Eng. ›› 2022, Vol. 16 ›› Issue (9) : 123. DOI: 10.1007/s11783-022-1555-2
REVIEW ARTICLE
REVIEW ARTICLE

Research progress and prospects of complete ammonia oxidizing bacteria in wastewater treatment

Author information +
History +

Highlights

• Comammox bacteria have unique physiological characteristics.

• Comammox bacteria are widely distributed in natural and artificial systems.

• Comammox bacteria have the potential to reduce N2O emissions.

• Coupling comammox bacteria with DEAMOX can be promoted in wastewater treatment.

• Comammox bacteria have significant potential for enhancing total nitrogen removal.

Abstract

Complete ammonia oxidizing bacteria, or comammox bacteria (CAOB), can oxidize ammonium to nitrate on its own. Its discovery revolutionized our understanding of biological nitrification, and its distribution in both natural and artificial systems has enabled a reevaluation of the relative contribution of microorganisms to the nitrogen cycle. Its wide distribution, adaptation to oligotrophic medium, and diverse metabolic pathways, means extensive research on CAOB and its application in water treatment can be promoted. Furthermore, the energy-saving characteristics of high oxygen affinity and low sludge production may also become frontier directions for wastewater treatment. This paper provides an overview of the discovery and environmental distribution of CAOB, as well as the physiological characteristics of the microorganisms, such as nutrient medium, environmental factors, enzymes, and metabolism, focusing on future research and the application of CAOB in wastewater treatment. Further research should be carried out on the physiological characteristics of CAOB, to analyze its ecological niche and impact factors, and explore its application potential in wastewater treatment nitrogen cycle improvement.

Graphical abstract

Keywords

Complete ammonia oxidizing (comammox) bacteria / Nitrogen cycle / Physiological characteristics / Wastewater treatment

Cite this article

Download citation ▾
Shaoping Luo, Yi Peng, Ying Liu, Yongzhen Peng. Research progress and prospects of complete ammonia oxidizing bacteria in wastewater treatment. Front. Environ. Sci. Eng., 2022, 16(9): 123 https://doi.org/10.1007/s11783-022-1555-2

References

[1]
Annavajhala M K, Kapoor V, Santo-Domingo J, Chandran K (2018). Comammox functionality identified in diverse engineered biological wastewater treatment systems. Environmental Science & Technology Letters, 5(2): 110–116
CrossRef Pubmed Google scholar
[2]
Arp D J, Sayavedra-Soto L A, Hommes N G (2002). Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea. Archives of Microbiology, 178(4): 250–255
CrossRef Pubmed Google scholar
[3]
Borisov V B, Gennis R B, Hemp J, Verkhovsky M I (2011). The cytochrome bd respiratory oxygen reductases. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1807(11): 1398–1413
CrossRef Google scholar
[4]
Camejo P Y, Santo Domingo J, McMahon K D, Noguera D R (2017). Genome-enabled insights into the ecophysiology of the comammox bacterium “Candidatus Nitrospira nitrosa”. mSystems, 2(5): e00059–e17
CrossRef Pubmed Google scholar
[5]
Chao Y Q, Mao Y P, Yu K, Zhang T (2016). Novel nitrifiers and comammox in a full-scale hybrid biofilm and activated sludge reactor revealed by metagenomic approach. Applied Microbiology and Biotechnology, 100(18): 8225–8237
[6]
Costa E, Pérez J, Kreft J U (2006). Why is metabolic labour divided in nitrification? Trends in Microbiology, 14(5): 213–219
CrossRef Pubmed Google scholar
[7]
Daims H, Lebedeva E V, Pjevac P, Han P, Herbold C, Albertsen M, Jehmlich N, Palatinszky M, Vierheilig J, Bulaev A, Kirkegaard R H, von Bergen M, Rattei T, Bendinger B, Nielsen P H, Wagner M (2015). Complete nitrification by Nitrospira bacteria. Nature, 528(7583): 504–509
CrossRef Pubmed Google scholar
[8]
Erwin D P, Erickson I K, Delwiche M E, Colwell F S, Strap J L, Crawford R L (2005). Diversity of oxygenase genes from methane- and ammonia-oxidizing bacteria in the Eastern Snake River Plain aquifer. Applied and Environmental Microbiology, 71(4): 2016–2025
CrossRef Pubmed Google scholar
[9]
Gao J F, Fan X Y, Pan K L, Li H Y, Sun L X (2016). Diversity, abundance and activity of ammonia-oxidizing microorganisms in fine particulate matter. Scientific Reports, 6(1): 38785
CrossRef Pubmed Google scholar
[10]
Gottshall E Y, Bryson S J, Cogert K I, Landreau M, Sedlacek C J, Stahl D A, Daims H, Winkler M (2021). Sustained nitrogen loss in a symbiotic association of comammox Nitrospira and anammox bacteria. Water Research, 202(1): 117426
CrossRef Pubmed Google scholar
[11]
Han P, Yu Y, Zhou L, Tian Z, Li Z, Hou L, Liu M, Wu Q, Wagner M, Men Y (2019). Specific micropollutant biotransformation pattern by the comammox bacterium Nitrospira inopinata. Environmental Science & Technology, 53(15): 8695–8705
CrossRef Pubmed Google scholar
[12]
Heise J, Müller H, Probst A J, Meckenstock R U (2021). Ammonium removal in aquaponics indicates participation of comammox Nitrospira. Current Microbiology, 78(3): 894–903
CrossRef Pubmed Google scholar
[13]
Holman J B, Wareham D G (2005). COD, ammonia and dissolved oxygen time profiles in the simultaneous nitrification/denitrification process. Biochemical Engineering Journal, 22(2): 125–133
CrossRef Google scholar
[14]
Hu H W, He J Z (2017). Comammox−A newly discovered nitrification process in the terrestrial nitrogen cycle. Journal of Soils and Sediments, 17(12): 2709–2717
CrossRef Google scholar
[15]
Jia Z J, Kikuchi H, Watanabe T, Asakawa S, Kimura M (2007). Molecular identification of methane oxidizing bacteria in a Japanese rice field soil. Biology and Fertility of Soils, 44(1): 121–130
CrossRef Google scholar
[16]
Kits K D, Jung M Y, Vierheilig J, Pjevac P, Sedlacek C J, Liu S, Herbold C, Stein L Y, Richter A, Wissel H, Brüggemann N, Wagner M, Daims H (2019). Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata. Nature Communications, 10(1): 1836
CrossRef Pubmed Google scholar
[17]
Kits K D, Sedlacek C J, Lebedeva E V, Han P, Bulaev A, Pjevac P, Daebeler A, Romano S, Albertsen M, Stein L Y, Daims H, Wagner M (2017). Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle. Nature, 549(7671): 269–272
CrossRef Pubmed Google scholar
[18]
Knief C, Kolb S, Bodelier P L E, Lipski A, Dunfield P F (2006). The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration. Environmental Microbiology, 8(2): 321–333
CrossRef Pubmed Google scholar
[19]
Koch H, van Kessel M A H J, Lücker S (2019). Complete nitrification: insights into the ecophysiology of comammox Nitrospira. Applied Microbiology and Biotechnology, 103(1): 177–189
CrossRef Pubmed Google scholar
[20]
Könneke M, Bernhard A E, de la Torre J R, Walker C B, Waterbury J B, Stahl D A (2005). Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature, 437(7058): 543–546
CrossRef Pubmed Google scholar
[21]
Kuypers M M M (2017). Microbiology: A fight for scraps of ammonia. Nature, 549(7671): 162–163
CrossRef Pubmed Google scholar
[22]
Kuypers M M M, Marchant H K, Kartal B (2018). The microbial nitrogen-cycling network. Nature Reviews. Microbiology, 16(5): 263–276
CrossRef Pubmed Google scholar
[23]
Lawson C E, Lücker S (2018). Complete ammonia oxidation: An important control on nitrification in engineered ecosystems? Current Opinion in Biotechnology, 50: 158–165
CrossRef Pubmed Google scholar
[24]
Liu S, Wang H, Chen L, Wang J, Zheng M, Liu S, Chen Q, Ni J (2020a). Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers. The ISME Journal, 14(10): 2488–2504
CrossRef Pubmed Google scholar
[25]
Liu Z, Zhang C, Wei Q, Zhang S, Quan Z, Li M (2020b). Temperature and salinity drive comammox community composition in mangrove ecosystems across southeastern China. The Science of the total environment, 742: 140456
CrossRef Pubmed Google scholar
[26]
Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B, Rattei T, Damsté J S, Spieck E, Le Paslier D, Daims H (2010). A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria. Proceedings of the National Academy of Sciences of the United States of America, 107(30): 13479–13484
CrossRef Pubmed Google scholar
[27]
Palomo A, Pedersen A G, Fowler S J, Dechesne A, Sicheritz-Pontén T, Smets B F (2018). Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira. The ISME Journal, 12(7): 1779–1793
CrossRef Pubmed Google scholar
[28]
Pinto A J, Marcus D N, Ijaz U Z, Bautista-de Lose Santos Q M, Dick G J, Raskin L (2015). Metagenomic evidence for the presence of comammox Nitrospira-like bacteria in a drinking water system. MSphere, 1(1): e00054–e15
Pubmed
[29]
Pjevac P, Schauberger C, Poghosyan L, Herbold C W, van Kessel M A H J, Daebeler A, Steinberger M, Jetten M S M, Lücker S, Wagner M, Daims H (2017). AmoA-targeted polymerase chain reaction primers for the specific detection and quantification of comammox Nitrospira in the environment. Frontiers in Microbiology, 8: 1508
CrossRef Pubmed Google scholar
[30]
Roots P, Wang Y, Rosenthal A F, Griffin J S, Sabba F, Petrovich M, Yang F, Kozak J A, Zhang H, Wells G F (2019). Comammox Nitrospira are the dominant ammonia oxidizers in a mainstream low dissolved oxygen nitrification reactor. Water Research, 157: 396–405
CrossRef Pubmed Google scholar
[31]
Sakoula D, Koch H, Frank J, Jetten M S M, van Kessel M A H J, Lücker S (2021). Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification. The ISME journal, 15(4): 1010–1024
CrossRef Pubmed Google scholar
[32]
Sato Y, Tanaka E, Hori T, Futamata H, Murofushi K, Takagi H, Akachi T, Miwa T, Inaba T, Aoyagi T, Habe H (2021). Efficient conversion of organic nitrogenous wastewater to nitrate solution driven by comammox Nitrospira. Water Research, 197: 117088
CrossRef Pubmed Google scholar
[33]
Shao Y H, Wu J H (2021). comammox Nitrospira species dominate in an efficient partial nitrification-anammox bioreactor for treating ammonium at low loadings. Environmental Science & Technology, 55(3): 2087–2098
CrossRef Pubmed Google scholar
[34]
Shen Y C, Hu Y N, Shaw G C (2016). Expressions of alkaline phosphatase genes during phosphate starvation are under positive influences of multiple cell wall hydrolase genes in Bacillus subtilis. The Journal of General and Applied Microbiology, 62(2): 106–109
CrossRef Pubmed Google scholar
[35]
Shi Y, Jiang Y Y, Wang S Y, Wang X M, Zhu G B (2020). Biogeographic distribution of comammox bacteria in diverse terrestrial habitats. Science of the Total Environment, 717: 137257 doi.org/10.1016/j.scitotenv.2020.137257. PMID:32065897
[36]
Steenbergh A K, Meima M M, Kamst M, Bodelier P L E (2010). Biphasic kinetics of a methanotrophic community is a combination of growth and increased activity per cell. FEMS Microbiology Ecology, 71(1): 12–22
CrossRef Pubmed Google scholar
[37]
Sun D Y, Tang X F, Zhao M Y, Zhang Z X, Hou L J, Liu M, Wang B Z, Klümper U, Han P (2020). Distribution and diversity of comammox Nitrospira in coastal wetlands of China. Frontiers in Microbiology, 11: 589268
CrossRef Pubmed Google scholar
[38]
Sun D Y, Zhao M Y, Tang X F, Liu M, Hou L J, Zhao Q, Li J, Gu J D, Han P (2021). Niche adaptation strategies of different clades of comammox Nitrospira in the Yangtze Estuary. International Biodeterioration & Biodegradation, 164: 105286
CrossRef Google scholar
[39]
Takahashi Y, Fujitani H, Hirono Y, Tago K, Wang Y, Hayatsu M, Tsuneda S (2020). Enrichment of comammox and nitrite-oxidizing Nitrospira from acidic soils. Frontiers in Microbiology, 11: 1737
CrossRef Pubmed Google scholar
[40]
Tatari K, Musovic S, Gülay A, Dechesne A, Albrechtsen H, Smets B F (2017). Density and distribution of nitrifying guilds in rapid sand filters for drinking water production: Dominance of Nitrospira spp. Water Research, 127: 239–248
CrossRef Pubmed Google scholar
[41]
Teske A, Alm E, Regan J M, Toze S, Rittmann B E, Stahl D A (1994). Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. Journal of Bacteriology, 176(21): 6623–6630
CrossRef Pubmed Google scholar
[42]
Van Kessel M A H J, Speth D R, Albertsen M, Nielsen P H, Op den Camp H J M, Kartal B, Jetten M S M, Lücker S (2015). Complete nitrification by a single microorganism. Nature, 528(7583): 555–559
CrossRef Pubmed Google scholar
[43]
Vigliotta G, Nutricati E, Carata E, Tredici S M, De Stefano M, Pontieri P, Massardo D R, Prati M V, De Bellis L, Alifano P (2007). Clonothrix fusca Roze 1896, a filamentous, sheathed, methanotrophic γ-proteobacterium. Applied and Environmental Microbiology, 73(11): 3556–3565
CrossRef Pubmed Google scholar
[44]
Wang M Y, Huang G H, Zhao Z R, Dang C Y, Liu W, Zheng M S (2018). Newly designed primer pair revealed dominant and diverse comammox amoA gene in full-scale wastewater treatment plants. Bioresource Technology, 270: 580–587
CrossRef Pubmed Google scholar
[45]
Wang S Y, Pi Y L, Jiang Y Y, Pan H W, Wang X X, Wang X M, Zhou Z M, Zhu G B (2019). Nitrate reduction in the reed rhizosphere of a riparian zone: From functional genes to activity and contribution. Environmental Research, 180(6): 108867
CrossRef Pubmed Google scholar
[46]
Wang Y, Ma L, Mao Y, Jiang X, Xia Y, Yu K, Li B, Zhang T (2017). Comammox in drinking water systems. Water Research, 116: 332–341
CrossRef Pubmed Google scholar
[47]
Wang Y L, Zhao R X, Liu L, Li B, Zhang T (2021). Selective enrichment of comammox from activated sludge using antibiotics. Water Research, 197: 117087
CrossRef Pubmed Google scholar
[48]
Wang Z, Zhang L, Zhang F Z, Jiang H, Ren S, Wang W, Peng Y Z (2020). Nitrite accumulation in comammox-dominated nitrification-denitrification reactors: Effects of DO concentration and hydroxylamine addition. Journal of Hazardous Materials, 384: 121375
CrossRef Pubmed Google scholar
[49]
Winkler M K, Bassin J P, Kleerebezem R, Sorokin D Y, van Loosdrecht M C (2012). Unravelling the reasons for disproportion in the ratio of AOB and NOB in aerobic granular sludge. Applied Microbiology and Biotechnology, 94(6): 1657–1666
CrossRef Pubmed Google scholar
[50]
Winogradsky S (1890). The morphology of the contributions of nitrification system. Archives of Biological Sciences, 4: 257–275
[51]
Xia F, Wang J G, Zhu T, Zou B, Rhee S K, Quan Z X (2018). Ubiquity and diversity of complete ammonia oxidizers (comammox). Applied and Environmental Microbiology, 84(24): e01390–e18
CrossRef Pubmed Google scholar
[52]
Xu S Y, Wu X L, Lu H J (2021). Overlooked nitrogen-cycling microorganisms in biological wastewater treatment. Frontiers of Environmental Science & Engineering, 15(6): 133
CrossRef Pubmed Google scholar
[53]
Xu Y F, Lu J, Wang Y C, Liu G L, Wan X Q, Hua Y M, Zhu D W, Zhao J W (2020). Diversity and abundance of comammox bacteria in the sediments of an urban lake. Journal of Applied Microbiology, 128(6): 1647–1657
CrossRef Pubmed Google scholar
[54]
Yu C, Hou L, Zheng Y, Liu M, Yin G, Gao J, Liu C, Chang Y, Han P (2018). Evidence for complete nitrification in enrichment culture of tidal sediments and diversity analysis of clade a comammox Nitrospira in natural environments. Applied Microbiology and Biotechnology, 102(21): 9363–9377
CrossRef Pubmed Google scholar
[55]
Zeng W, Zhang L M, Wang A Q, Zhang J, Peng Y Z, Duan J L (2015). Community structures and population dynamics of nitrifying bacteria in activated sludges of wastewater treatment plants. China Environmental Science, 35(11): 3257–3265 (in Chinese)
[56]
Zhao Y X, Hu J J, Yang W L, Wang J Q, Jia Z J, Zheng P, Hu B L (2021). The long-term effects of using nitrite and urea on the enrichment of comammox bacteria. Science of the Total Environment, 755(Pt 2): 142580
CrossRef Pubmed Google scholar
[57]
Zhao Z, Huang G, He S, Zhou N, Wang M, Dang C, Wang J, Zheng M (2019). Abundance and community composition of comammox bacteria in different ecosystems by a universal primer set. Science of the Total Environment , 691: 146–155
CrossRef Pubmed Google scholar
[58]
Zhou X, Li B, Wei J, Ye Y, Xu J, Chen L, Lu C (2021). Temperature influenced the comammox community composition in drinking water and wastewater treatment plants. Microbial Ecology, 82(4): 870–884
CrossRef Pubmed Google scholar

Acknowledgements

This research project was financially supported by the Foundation for Innovation Research Groups of the National Natural Science Foundation of China (No. 62021003); Biological Wastewater Treatment and Process Control Technology, Beijing International Science and technology Cooperation Base; and the Founding projects of Beijing Municipal Commission of Education.

Open Access

This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

RIGHTS & PERMISSIONS

2022 The Author(s) 2022. This article is published with open access at link.springer.com and journal.hep. com.cn
AI Summary AI Mindmap
PDF(1061 KB)

Accesses

Citations

Detail

Sections
Recommended

/