Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill

Rong Ye, Sai Xu, Qian Wang, Xindi Fu, Huixiang Dai, Wenjing Lu

PDF(1338 KB)
PDF(1338 KB)
Front. Environ. Sci. Eng. ›› 2021, Vol. 15 ›› Issue (4) : 77. DOI: 10.1007/s11783-020-1370-6
RESEARCH ARTICLE
RESEARCH ARTICLE

Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill

Author information +
History +

Highlights

Ascomycota was the predominant phylum in sanitary landfill fungal communities.

• Saprophytic fungi may be of special importance in landfill ecology.

• Both richness and diversity of fungal community were lower in leachate than refuse.

• Physical habitat partly contributed to the geographic variance of fungal community.

• NO3 was considered the most significant abiotic factor shaping fungal community.

Abstract

Land filling is the main method to dispose municipal solid waste in China. During the decomposition of organic waste in landfills, fungi play an important role in organic carbon degradation and nitrogen cycling. However, fungal composition and potential functions in landfill have not yet been characterized. In this study, refuse and leachate samples with different areas and depths were taken from a large sanitary landfill in Beijing to identify fungal communities in landfills. In high-throughput sequencing of ITS region, 474 operational taxonomic units (OTUs) were obtained from landfill samples with a cutoff level of 3% and a sequencing depth of 19962. The results indicates that Ascomycota, with the average relative abundance of 84.9%, was the predominant phylum in landfill fungal communities. At the genus level, Family Hypocreaceae unclassified (15.7%), Fusarium (9.9%) and Aspergillus (8.3%) were the most abundant fungi found in the landfill and most of them are of saprotrophic lifestyle, which plays a big role in nutrient cycling in ecosystem. Fungi existed both in landfilled refuse and leachate while both the richness and evenness of fungal communities were higher in the former. In addition, fungal communities in landfilled refuse presented geographic variances, which could be partly attributed to physical habitat properties (pH, dissolved organic carbon, volatile solid, NH4+, NO2 and NO3), while NO3 was considered the most significant factor (p<0.05) in shaping fungal community.

Graphical abstract

Keywords

Sanitary landfill / Fungal community / Diversity / Saprotroph / Physical habitat / Environmental factor

Cite this article

Download citation ▾
Rong Ye, Sai Xu, Qian Wang, Xindi Fu, Huixiang Dai, Wenjing Lu. Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill. Front. Environ. Sci. Eng., 2021, 15(4): 77 https://doi.org/10.1007/s11783-020-1370-6

References

[1]
Baldrian P, Kolarik M, Stursova M, Kopecky J, Valaskova V, Vetrovsky T, Zifcakova L, Snajdr J, Ridl J, Vlcek C, Voriskova J (2012). Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. ISME Journal, 6(2): 248–258
CrossRef Google scholar
[2]
Bolyard S C, Reinhart D R (2016). Application of landfill treatment approaches for stabilization of municipal solid waste. Waste Management (New York, N.Y.), 55: 22–30
CrossRef Google scholar
[3]
Braker G, Conrad R (2011). Diversity, structure, and size of N2O-producing microbial communities in soils: What matters for their functioning? Advances in Applied Microbiology, 75: 33–70
CrossRef Google scholar
[4]
Chao A (1984). Nonparametric estimation of the number of classes in a population. Scandinavian Journal of Statistics, 11(4): 265–270
[5]
Chen H, Yu F, Shi W (2016). Detection of N2O-producing fungi in environment using nitrite reductase gene (nirK)-targeting primers. Fungal Biology, 120(12): 1479–1492
CrossRef Google scholar
[6]
Dou K, Gao J, Zhang C, Yang H, Jiang X, Li J, Li Y, Wang W, Xian H, Li S, Liu Y, Hu J, Chen J (2019). Trichoderma biodiversity in major ecological systems of China. Journal of Microbiology (Seoul, Korea), 57(8): 668–675
CrossRef Google scholar
[7]
EPM (Ministry of Environmental and Protection of the People’s Republic of China) (2012). Soil-Determination of ammonium, nitrite and nitrate by extraction with potassium chloride solution-spectrophotometric methods. HJ 634–2012. Beijing: China Environmental Science Press (in Chinese)
[8]
Farkas C, Rezessy-Szabo J M, Gupta V K, Truong D H, Friedrich L, Felfoldi J, Nguyen Q D (2019). Microbial saccharification of wheat bran for bioethanol fermentation. Journal of Cleaner Production, 240: 118269
CrossRef Google scholar
[9]
Fierer N, Liu Z, Rodriguez-Hernandez M, Knight R, Henn M, Hernandez M T (2008). Short-term temporal variability in airborne bacterial and fungal populations. Applied and Environmental Microbiology, 74(1): 200–207
CrossRef Google scholar
[10]
Hayatsu M, Tago K, Saito M (2008). Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification. Soil Science and Plant Nutrition, 54(1): 33–45
CrossRef Google scholar
[11]
Li Y, Chapman S J, Nicol G W, Yao H (2018). Nitrification and nitrifiers in acidic soils. Soil Biology & Biochemistry, 116: 290–301
CrossRef Google scholar
[12]
Liu R, Suter H, He J, Hayden H, Chen D (2015). Influence of temperature and moisture on the relative contributions of heterotrophic and autotrophic nitrification to gross nitrification in an acid cropping soil. Journal of Soils and Sediments, 15(11): 2304–2309
CrossRef Google scholar
[13]
Liu S, Wang H, Tian P, Yao X, Sun H, Wang Q, Delgado-Baquerizo M (2020). Decoupled diversity patterns in bacteria and fungi across continental forest ecosystems. Soil Biology & Biochemistry, 144: 107763
CrossRef Google scholar
[14]
Lockhart R J, Van Dyke M I, Beadle I R, Humphreys P, McCarthy A J (2006). Molecular biological detection of anaerobic gut fungi (Neocallimastigales) from landfill sites. Applied and Environmental Microbiology, 72(8): 5659–5661
CrossRef Google scholar
[15]
Maeda K, Toyoda S, Philippot L, Hattori S, Nakajima K, Ito Y, Yoshida N (2017). Relative contribution of nirK- and nirS- bacterial denitrifiers as well as fungal denitrifiers to nitrous oxide production from dairy manure compost. Environmental Science & Technology, 51(24): 14083–14091
CrossRef Google scholar
[16]
Moore-Kucera J, Cox S B, Peyron M, Bailes G, Kinloch K, Karich K, Miles C, Inglis D A, Brodhagen M (2014). Native soil fungi associated with compostable plastics in three contrasting agricultural settings. Applied Microbiology and Biotechnology, 98(14): 6467–6485
CrossRef Google scholar
[17]
Mothapo N, Chen H, Cubeta M A, Grossman J M, Fuller F, Shi W (2015). Phylogenetic, taxonomic and functional diversity of fungal denitrifiers and associated N2O production efficacy. Soil Biology & Biochemistry, 83: 160–175
CrossRef Google scholar
[18]
Munir E, Harefa R S M, Priyani N, Suryanto D (2018). Plastic degrading fungi Trichoderma viride and Aspergillus nomius isolated from local landfill soil in Medan. IOP Conference Series: Earth and Environmental Science, 126: 012145
CrossRef Google scholar
[19]
NBSC (National Bureau of Statistics of China) (2019). China Statistical Yearbook 2019. Beijing: China Statistics Press (in Chinese)
[20]
Peng J, Wang K, Yin X B, Yin X Q, Du M F, Gao Y Z, Antwi P, Ren N Q, Wang A J (2019). Trophic mode and organics metabolic characteristic of fungal community in swine manure composting. Frontiers of Environmental Science & Engineering, 13(6): 93
CrossRef Google scholar
[21]
Richards T A, Jones M D M, Leonard G, Bass D (2012). Marine fungi: Their ecology and molecular diversity. Annual Review of Marine Science, 4: 495–522
CrossRef Google scholar
[22]
Sang N N, Soda S, Ishigaki T, Ike M (2012). Microorganisms in landfill bioreactors for accelerated stabilization of solid wastes. Journal of Bioscience and Bioengineering, 114(3): 243–250
CrossRef Google scholar
[23]
Schadt C W, Martin A P, Lipson D A, Schmidt S K (2003). Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science, 301(5638): 1359–1361
CrossRef Google scholar
[24]
Sekhohola-Dlamini L, Tekere M (2020). Microbiology of municipal solid waste landfills: A review of microbial dynamics and ecological influences in waste bioprocessing. Biodegradation, 31: 1–21
CrossRef Google scholar
[25]
Shannon C E (1948). A mathematical theory of communication. Bell System Technical Journal, 27(3): 379–423
CrossRef Google scholar
[26]
Spina F, Cordero C, Schiliro T, Sgorbini B, Pignata C, Gilli G, Bicchi C, Varese G C (2015). Removal of micropollutants by fungal laccases in model solution and municipal wastewater: evaluation of estrogenic activity and ecotoxicity. Journal of Cleaner Production, 100: 185–194
CrossRef Google scholar
[27]
Talbot J M, Bruns T D, Smith D P, Branco S, Glassman S I, Erlandson S, Vilgalys R, Peay K G (2013). Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition. Soil Biology & Biochemistry, 57: 282–291
CrossRef Google scholar
[28]
Varnaitė R, Raudonienė V, Bridžiuvienė D (2011). Enzymatic biodegradation of lignin-cellulose complex in plant origin material. Materials Science-Medziagotyra, 17(1): 99–103
CrossRef Google scholar
[29]
Wang K, Mao H, Li X (2018). Functional characteristics and influence factors of microbial community in sewage sludge composting with inorganic bulking agent. Bioresource Technology, 249: 527–535
CrossRef Google scholar
[30]
Xu S, Lu W, Liu Y, Ming Z, Liu Y, Meng R, Wang H (2017). Structure and diversity of bacterial communities in two large sanitary landfills in China as revealed by high-throughput sequencing (MiSeq). Waste Management (New York, N.Y.), 63: 41–48
CrossRef Google scholar
[31]
Yilmaz N, López-Quintero C A, Vasco-Palacios A M, Frisvad J C, Theelen B, Boekhout T, Samson R A, Houbraken J (2016). Four novel Talaromyces species isolated from leaf litter from Colombian Amazon rain forests. Mycological Progress, 15(10–11): 1041–1056
CrossRef Google scholar
[32]
Yokoyama K, Jinnai K, Sakiyama Y, Touma M (2012). Contribution of fungi to acetylene-tolerant and high ammonia availability-dependent nitrification potential in tea field soils with relatively neutral pH. Applied Soil Ecology, 62: 37–41
CrossRef Google scholar
[33]
Zafar U, Houlden A, Robson G D (2013). Fungal communities associated with the biodegradation of polyester polyurethane buried under compost at different temperatures. Applied and Environmental Microbiology, 79(23): 7313–7324
CrossRef Google scholar
[34]
Zhang X, Zhong Y, Yang S, Zhang W, Xu M, Ma A, Zhuang G, Chen G, Liu W (2014). Diversity and dynamics of the microbial community on decomposing wheat straw during mushroom compost production. Bioresource Technology, 170: 183–195
CrossRef Google scholar
[35]
Zhu T, Meng T, Zhang J, Zhong W, Müller C, Cai Z (2015). Fungi-dominant heterotrophic nitrification in a subtropical forest soil of China. Journal of Soils and Sediments, 15(3): 705–709
CrossRef Google scholar

Acknowledgements

This work was supported by National Key R&D Program of China (2018YFD1100600) and National Natural Science Foundation of China (Grant No. 21976101).

Electronic Supplementary Material

Supplementary material is available in the online version of this article at https://doi.org/10.1007/s11783-020-1370-6 and is accessible for authorized users.

RIGHTS & PERMISSIONS

2020 Higher Education Press
AI Summary AI Mindmap
PDF(1338 KB)

Accesses

Citations

Detail

Sections
Recommended

/