Characterization of a phenanthrene-degrading methanogenic community
Quanhui Ye, Chengyue Liang, Chongyang Wang, Yun Wang, Hui Wang
Characterization of a phenanthrene-degrading methanogenic community
The mixed samples of contaminated soil, sludge and coke wastewater showed great phenanthrene methanogenic degradation potential.
Comamonadaceae, Nocardiaceae and Methanobacterium were dominant members.
Hexane, hexadecane and benzene could enhance phenanthrene degradation.
Polycyclic aromatic hydrocarbons (PAHs) often occur in oil-contaminated soil, coke wastewater and domestic sludge; however, associated PAH degraders in these environments are not clear. Here we evaluated phenanthrene degradation potential in the mixed samples of above environments, and obtained a methanogenic community with different microbial profile compared to those from sediments. Phenanthrene was efficiently degraded (1.26 mg/L/d) and nonstoichiometric amount of methane was produced simultaneously. 16S rRNA gene sequencing demonstrated that bacterial populations were mainly associated with Comamonadaceae Nocardiaceae and Thermodesulfobiaceae, and that methanogenic archaea groups were dominated by Methanobacterium and Methanothermobacter. Substances such as hexane, hexadecane, benzene and glucose showed the most positive effects on phenanthrene degradation. Substrate utilization tests indicated that this culture could not utilize other PAHs. These analyses could offer us some suggestions on the putative phenanthrene-degrading microbes in such environments, and might help us develop strategies for the removal of PAHs from contaminated soil and sludge.
Phenanthrene degradation potential / Methanogenic / Bacterial population / Archaeal group
[1] |
Aislabie J, McLeod M, Fraser R (1998). Potential for biodegradation of hydrocarbons in soil from the Ross Dependency, Antarctica. Applied Microbiology and Biotechnology, 49(2): 210–214
CrossRef
Google scholar
|
[2] |
Bengtsson G, Zerhouni P (2003). Effects of carbon substrate enrichment and DOC concentration on biodegradation of PAHs in soil. Journal of Applied Microbiology, 94(4): 608–617
CrossRef
Pubmed
Google scholar
|
[3] |
Berdugo-Clavijo C, Dong X, Soh J, Sensen C W, Gieg L M (2012). Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons. FEMS Microbiology Ecology, 81(1): 124–133
CrossRef
Pubmed
Google scholar
|
[4] |
Canul-Chan M, Sánchez-González M, González-Burgos A, Zepeda A, Rojas-Herrera R (2017). Population structures shift during the biodegradation of crude and fuel oil by an indigenous consortium. International Journal of Environmental Science and Technology, 15(1): 1–16
CrossRef
Google scholar
|
[5] |
Chang B V, Chang I T, Yuan S Y (2008a). Anaerobic degradation of phenanthrene and pyrene in mangrove sediment. Bulletin of Environmental Contamination and Toxicology, 80(2): 145–149
CrossRef
Pubmed
Google scholar
|
[45] |
Chang B V, Chang S W, Yuan S Y. Anaerobic degradation of polycyclic aromatic hydrocarbons in sludge. Adv Environ Res, 2003, 7(3): 623–628
|
[46] |
Chang B V, Shiung L C, Yuan S Y. Anaerobic biodegradation of polycyclic aromatic hydrocarbon in soil. Chemosphere, 2002, 48: 717–724
|
[6] |
Chang M W, Holoman T P, Yi H (2008b). Molecular characterization of surfactant-driven microbial community changes in anaerobic phenanthrene-degrading cultures under methanogenic conditions. Biotechnology Letters, 30(9): 1595–1601
CrossRef
Pubmed
Google scholar
|
[7] |
Chang W, Um Y, Hoffman B, Pulliam Holoman T R (2005). Molecular characterization of polycyclic aromatic hydrocarbon (PAH)-degrading methanogenic communities. Biotechnology Progress, 21(3): 682–688
CrossRef
Pubmed
Google scholar
|
[8] |
Chang W, Um Y, Holoman T R (2006). Polycyclic aromatic hydrocarbon (PAH) degradation coupled to methanogenesis. Biotechnology Letters, 28(6): 425–430
CrossRef
Pubmed
Google scholar
|
[9] |
Chen S, Aitken M D (1999). Salicylate stimulates the degradation of high-molecular weight polycyclic aromatic hydrocarbons by Pseudomonas saccharophila P15. Environmental Science & Technology, 33(3): 435–439
CrossRef
Google scholar
|
[10] |
Davidova I A, Gieg L M, Duncan K E, Suflita J M (2007). Anaerobic phenanthrene mineralization by a carboxylating sulfate-reducing bacterial enrichment. ISME Journal, 1(5): 436–442
CrossRef
Pubmed
Google scholar
|
[11] |
Fang T, Pan R, Jiang J, He F, Wang H (2016). Effect of salinity on community structure and naphthalene dioxygenase gene diversity of a halophilic bacterial consortium. Frontiers of Environmental Science & Engineering, 10(6): 16
CrossRef
Google scholar
|
[12] |
Fuchedzhieva N, Karakashev D, Angelidaki I (2008). Anaerobic biodegradation of fluoranthene under methanogenic conditions in presence of surface-active compounds. Journal of Hazardous Materials, 153(1-2): 123–127
CrossRef
Pubmed
Google scholar
|
[13] |
Galushko A, Minz D, Schink B, Widdel F (1999). Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacterium. Environmental Microbiology, 1(5): 415–420
CrossRef
Pubmed
Google scholar
|
[14] |
Gómez R S G, Pandiyan T, Iris V E A, Luna-Pabello V, de Bazúa C D (2004). Spectroscopic determination of poly-aromatic compounds in petroleum contaminated soils. Water, Air, and Soil Pollution, 158(1): 137–151
CrossRef
Google scholar
|
[15] |
Goyal A K, Zylstra G J (1996). Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39. Applied and Environmental Microbiology, 62(1): 230–236
Pubmed
|
[16] |
Gray N D, Sherry A, Larter S R, Erdmann M, Leyris J, Liengen T, Beeder J, Head I M (2009). Biogenic methane production in formation waters from a large gas field in the North Sea. Extremophiles, 13(3): 511–519
CrossRef
Pubmed
Google scholar
|
[17] |
Haritash A K, Kaushik C P (2009). Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review. Journal of Hazardous Materials, 169(1-3): 1–15
CrossRef
Pubmed
Google scholar
|
[18] |
Huang Y, Zhang J, Zhu L (2013). Evaluation of the application potential of bentonites in phenanthrene bioremediation by characterizing the biofilm community. Bioresource Technology, 134: 17–23
CrossRef
Pubmed
Google scholar
|
[19] |
Jiménez N, Viñas M, Bayona J M, Albaiges J, Solanas A M (2007). The Prestige oil spill: bacterial community dynamics during a field biostimulation assay. Applied Microbiology and Biotechnology, 77(4): 935–945
CrossRef
Pubmed
Google scholar
|
[20] |
Keith L H, Telliard W A (1979). Priority pollutants I—A perspective view. Environmental Science & Technology, 13(4): 416–423
CrossRef
Google scholar
|
[21] |
Kong X, Yu S, Xu S, Fang W, Liu J, Li H (2018). Effect of Fe0 addition on volatile fatty acids evolution on anaerobic digestion at high organic loading rates. Waste Management (New York, N.Y.), 71: 719–727
CrossRef
Pubmed
Google scholar
|
[22] |
Kryachko Y, Dong X, Sensen C W, Voordouw G (2012). Compositions of microbial communities associated with oil and water in a mesothermic oil field. Antonie van Leeuwenhoek, 101(3): 493–506
CrossRef
Pubmed
Google scholar
|
[23] |
Kümmel S, Herbst F A, Bahr A, Duarte M, Pieper D H, Jehmlich N, Seifert J, von Bergen M, Bombach P, Richnow H H, Vogt C (2015). Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers. FEMS Microbiology Ecology, 91(3): 1–13
CrossRef
Pubmed
Google scholar
|
[24] |
Li H, Chang J, Liu P, Fu L, Ding D, Lu Y (2015). Direct interspecies electron transfer accelerates syntrophic oxidation of butyrate in paddy soil enrichments. Environmental Microbiology, 17(5): 1533–1547
CrossRef
Pubmed
Google scholar
|
[25] |
Liang B, Wang L Y, Mbadinga S M, Liu J F, Yang S Z, Gu J D, Mu B Z (2015). Anaerolineaceae and Methanosaeta turned to be the dominant microorganisms in alkanes-dependent methanogenic culture after long-term of incubation. AMB Express, 5(1): 117
CrossRef
Pubmed
Google scholar
|
[26] |
Lladó S, Jiménez N, Viñas M, Solanas A M (2009). Microbial populations related to PAH biodegradation in an aged biostimulated creosote-contaminated soil. Biodegradation, 20(5): 593–601
CrossRef
Pubmed
Google scholar
|
[27] |
Luo J, Zhang J, Tan X, McDougald D, Zhuang G, Fane A G, Kjelleberg S, Cohen Y, Rice S A (2015). Characterization of the archaeal community fouling a membrane bioreactor. Journal of Environmental Sciences (China), 29: 115–123
CrossRef
Pubmed
Google scholar
|
[28] |
Musat F, Galushko A, Jacob J, Widdel F, Kube M, Reinhardt R, Wilkes H, Schink B, Rabus R (2009). Anaerobic degradation of naphthalene and 2-methylnaphthalene by strains of marine sulfate-reducing bacteria. Environmental Microbiology, 11(1): 209–219
CrossRef
Pubmed
Google scholar
|
[29] |
Pérez S, Guillamón M, Barceló D (2001). Quantitative analysis of polycyclic aromatic hydrocarbons in sewage sludge from wastewater treatment plants. Journal of Chromatography. A, 938(1-2): 57–65
CrossRef
Pubmed
Google scholar
|
[30] |
Pinyakong O, Tiangda K, Iwata K, Omori T (2012). Isolation of novel phenanthrene-degrading bacteria from seawater and the influence of its physical factors on the degradation of phenanthrene. Science Asia, 38(1): 36–43
CrossRef
Google scholar
|
[31] |
Safinowski M, Meckenstock R U (2006). Methylation is the initial reaction in anaerobic naphthalene degradation by a sulfate-reducing enrichment culture. Environmental Microbiology, 8(2): 347–352
CrossRef
Pubmed
Google scholar
|
[32] |
Sekiguchi Y, Kamagata Y, Syutsubo K, Ohashi A, Harada H, Nakamura K (1998). Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. Microbiology-Uk, 144(Pt 9): 2655–2665
CrossRef
Pubmed
Google scholar
|
[33] |
Sullivan E R, Zhang X, Phelps C, Young L Y (2001). Anaerobic mineralization of stable-isotope-labeled 2-methylnaphthalene. Applied and Environmental Microbiology, 67(9): 4353–4357
CrossRef
Pubmed
Google scholar
|
[34] |
Tøndervik A, Bruheim P, Berg L, Ellingsen T E, Kotlar H K, Valla S, Throne-Holst M (2012). Ralstonia sp. U2 naphthalene dioxygenase and Comamonas sp. JS765 nitrobenzene dioxygenase show differences in activity towards methylated naphthalenes. Journal of Bioscience and Bioengineering, 113(2): 173–178
CrossRef
Pubmed
Google scholar
|
[35] |
Wan R, Zhang S, Xie S (2012). Microbial community changes in aquifer sediment microcosm for anaerobic anthracene biodegradation under methanogenic condition. Journal of Environmental Sciences (China), 24(8): 1498–1503
CrossRef
Pubmed
Google scholar
|
[36] |
Yarza P, Yilmaz P, Pruesse E, Glöckner F O, Ludwig W, Schleifer K H, Whitman W B, Euzéby J, Amann R, Rosselló-Móra R (2014). Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nature Reviews. Microbiology, 12(9): 635–645
CrossRef
Pubmed
Google scholar
|
[37] |
Ye Q, Zhang Z, Huang Y, Fang T, Cui Q, He C, Wang H (2018). Enhancing electron transfer by magnetite during phenanthrene anaerobic methanogenic degradation. International Biodeterioration & Biodegradation, 129: 109–116
CrossRef
Google scholar
|
[38] |
Yin Q, Miao J, Li B, Wu G (2017). Enhancing electron transfer by ferroferric oxide during the anaerobic treatment of synthetic wastewater with mixed organic carbon. International Biodeterioration & Biodegradation, 119: 104–110
CrossRef
Google scholar
|
[39] |
Yuan S Y, Chang B V (2007). Anaerobic degradation of five polycyclic aromatic hydrocarbons from river sediment in Taiwan. Journal of Environmental Science and Health. Part. B, Pesticides, Food Contaminants, and Agricultural Wastes, 42(1): 63–69
CrossRef
Pubmed
Google scholar
|
[40] |
Zhang S, Wang Q, Xie S (2012a). Stable isotope probing identifies anthracene degraders under methanogenic conditions. Biodegradation, 23(2): 221–230
CrossRef
Pubmed
Google scholar
|
[41] |
Zhang S Y, Wang Q F, Xie S G (2012b). Molecular characterization of phenanthrene-degrading methanogenic communities in leachate-contaminated aquifer sediment. International Journal of Environmental Science and Technology, 9(4): 705–712
CrossRef
Google scholar
|
[42] |
Zhang X, Young L Y (1997). Carboxylation as an initial reaction in the anaerobic metabolism of naphthalene and phenanthrene by sulfidogenic consortia. Applied and Environmental Microbiology, 63(12): 4759–4764
Pubmed
|
[43] |
Zhou S, Xu J, Yang G, Zhuang L (2014). Methanogenesis affected by the co-occurrence of iron(III) oxides and humic substances. FEMS Microbiology Ecology, 88(1): 107–120
CrossRef
Pubmed
Google scholar
|
[44] |
Zhuang L, Tang J, Wang Y, Hu M, Zhou S (2015). Conductive iron oxide minerals accelerate syntrophic cooperation in methanogenic benzoate degradation. Journal of Hazardous Materials, 293: 37–45
CrossRef
Pubmed
Google scholar
|
/
〈 | 〉 |