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Head-to-tail cyclization of a heptapeptide eliminates its cytotoxicity and significantly increases its inhibition effect on amyloid β-protein fibrillation and cytotoxicity
Received date: 08 Jul 2017
Accepted date: 19 Sep 2017
Published date: 09 May 2018
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Amyloid-β (Aβ) protein aggregation is the main hallmark of Alzheimer’s disease (AD). Inhibition of Aβ fibrillation is thus a promising therapeutic approach to the prevention and treatment of AD. Recently, we designed a heptapeptide inhibitor, LVFFARK (LK7). LK7 shows a promising inhibitory capability on Aβ fibrillation, but is prone to self-assembling and displays high cytotoxicity, which would hinder its practical application. Herein, we modified LK7 by a head-to-tail cyclization and obtained a cyclic LK7 (cLK7). cLK7 exhibits a different self-assembly behavior from LK7, and has higher stability against proteolysis than LK7 and little cytotoxicity to SH-SY5Y cells. Thermodynamic analysis revealed that both LK7 and cLK7 could bind to Aβ40 by electrostatic interactions, hydrogen bonding and hydrophobic interactions, but the binding affinity of cLK7 for Aβ40 (KD = 4.96 µmol/L) is six times higher than that of LK7 (KD = 32.2 µmol/L). The strong binding enables cLK7 to stabilize the secondary structure of Aβ40 and potently inhibit its nucleation, fibrillation and cytotoxicity at extensive concentration range, whereas LK7 could only moderately inhibit Aβ40 fibrillation and cytotoxicity at low concentrations. The findings indicate that the peptide cyclization is a promising approach to enhance the performance of peptide-based amyloid inhibitors.
Shuai Ma , Huan Zhang , Xiaoyan Dong , Linling Yu , Jie Zheng , Yan Sun . Head-to-tail cyclization of a heptapeptide eliminates its cytotoxicity and significantly increases its inhibition effect on amyloid β-protein fibrillation and cytotoxicity[J]. Frontiers of Chemical Science and Engineering, 2018 , 12(2) : 283 -295 . DOI: 10.1007/s11705-017-1687-2
1 |
Goedert M, Spillantini M G. A century of Alzheimer’s disease. Science, 2006, 314(5800): 777–781
|
2 |
Hardy J, Selkoe D J. The amyloid hypothesis of Alzheimer’s disease: Progress and problems on the road to therapeutics. Science, 2002, 297(5580): 353–356
|
3 |
Knowles T P, Vendruscolo M, Dobson C M. The amyloid state and its association with protein misfolding diseases. Nature Reviews. Molecular Cell Biology, 2014, 15(6): 384–396
|
4 |
Selkoe D J. Soluble oligomers of the amyloid β-protein impair synaptic plasticity and behavior. Behavioural Brain Research, 2008, 192(1): 106–113
|
5 |
Chimon S, Shaibat M A, Jones C R, Calero D C, Aizezi B, Ishii Y. Evidence of fibril-like β-sheet structures in a neurotoxic amyloid intermediate of Alzheimer’s β-amyloid. Nature Structural & Molecular Biology, 2008, 14(12): 1157–1164
|
6 |
Härd T, Lendel C. Inhibition of amyloid formation. Journal of Molecular Biology, 2012, 421(4): 441–465
|
7 |
Wang Q M, Yu X, Li L Y, Zheng J. Inhibition of amyloid-β aggregation in Alzheimer’s disease. Current Pharmaceutical Design, 2014, 20(8): 1223–1243
|
8 |
Craik D J, Fairlie D P, Liras S, Price D. The future of peptide-based drugs. Chemical Biology & Drug Design, 2013, 81(1): 136–147
|
9 |
Tjernberg L O, Näslund J, Lindqvist F, Johansson J, Karlström A R, Thyberg J, Terenius L, Nordstedt C. Arrest of β-amyloid fibril formation by a pentapeptide ligand. Journal of Biological Chemistry, 1996, 271(15): 8545–8548
|
10 |
Liu F F, Du W J, Sun Y, Zheng J, Dong X Y. Atomistic characterization of binding modes and affinity of peptide inhibitors to amyloid-β protein. Frontiers of Chemical Science and Engineering, 2014, 8(4): 433–444
|
11 |
Soto C, Kindy M S, Baumann M, Frangione B. Inhibition of Alzheimer’s amyloidosis by peptides that prevent β-sheet conformation. Biochemical and Biophysical Research Communications, 1996, 226(3): 672–680
|
12 |
Bansal S, Maurya I K, Yadav N, Thota C K, Kumar V, Tikoo K, Chauhan V S, Jain R. C-terminal fragment, Aβ32-37, analogues protect against Aβ aggregation-induced toxicity. ACS Chemical Neuroscience, 2016, 7(5): 615–623
|
13 |
Fradinger E A, Monien B H, Urbanc B, Lomakin A, Tan M, Li H, Spring S M, Condron M M, Cruz L, Xie C W, Benedek G B, Bitan G. C-terminal peptides coassemble into Aβ42 oligomers and protect neurons against Aβ42-induced neurotoxicity. Proceedings of the National Academy of Sciences of the United States of America, 2008, 105(37): 14175–14180
|
14 |
Takahashi T, Mihara H. Peptide and protein mimetics inhibiting amyloid β-peptide aggregation. Accounts of Chemical Research, 2008, 41(10): 1309–1318
|
15 |
Turner J P, Lutzrechtin T, Moore K A, Rogers L, Bhave O, Moss M A, Servoss S L. Rationally designed peptoids modulate aggregation of amyloid-β 40. ACS Chemical Neuroscience, 2014, 5(7): 552–558
|
16 |
Arai T, Sasaki D, Araya T, Sato T, Sohma Y, Kanai M. A cyclic KLVFF-derived peptide aggregation inhibitor induces the formation of less-toxic off-pathway amyloid-β oligomers. ChemBioChem, 2014, 15(17): 2577–2583
|
17 |
Xiong N, Dong X Y, Zheng J, Liu F F, Sun Y. Design of LVFFARK and LVFFARK-functionalized nanoparticles for inhibiting amyloid β-protein fibrillation and cytotoxicity. ACS Applied Materials & Interfaces, 2015, 7(10): 5650–5662
|
18 |
Arai T, Araya T, Sasaki D, Taniguchi A, Sato T, Sohma Y, Kanai M. Rational design and identification of a non-peptidic aggregation inhibitor of amyloid-β based on a pharmacophore motif obtained from cyclo [-Lys-Leu-Val-Phe-Phe-]. Angewandte Chemie International Edition, 2014, 53(31): 8236–8239
|
19 |
Luo J H, Otero J M, Yu C H, Wärmländer S K, Gräslund A, Overhand M, Abrahams J P. Inhibiting and reversing amyloid-β peptide (1–40) fibril formation with gramicidin S and engineered analogues. Chemistry (Weinheim an der Bergstrasse, Germany), 2013, 19(51): 17338–17348
|
20 |
Cho P Y, Joshi G, Boersma M D, Johnson J A, Murphy R M. A cyclic peptide mimic of the β-amyloid binding domain on transthyretin. ACS Chemical Neuroscience, 2015, 6(5): 778–789
|
21 |
Zheng J, Baghkhanian A M, Nowick J S. A hydrophobic surface is essential to inhibit the aggregation of a Tau-protein-derived hexapeptide. Journal of the American Chemical Society, 2013, 135(18): 6846–6852
|
22 |
Richman M, Wilk S, Chemerovski M, Wärmländer S K T S, Wahlström A, Gräslund A, Rahimipour S. In vitro and mechanistic studies of an antiamyloidogenic self-assembled cyclic D,L-α-peptide architecture. Journal of the American Chemical Society, 2013, 135(9): 3474–3484
|
23 |
Choi S J, Jeong W J, Kang S K, Lee M, Kim E, Ryu D Y, Lim Y B. Differential self-assembly behaviors of cyclic and linear peptides. Biomacromolecules, 2012, 13(7): 1991–1995
|
24 |
Ziehm T, Brener O, Groen T, Kadish I, Frenzel D, Tusche M, Kutzsche J, Reiss K, Gremer L, Nagel-Steger L,
|
25 |
March D R, Abbenante G, Bergman D A, Brinkworth R I, Wickramasinghe W, Begun J, Martin J L, Fairlie D P. Substrate-based cyclic peptidomimetics of Phe-Ile-Val that Inhibit HIV-1 protease using a novel enzyme-binding mode. Journal of the American Chemical Society, 1996, 118(14): 3375–3379
|
26 |
Rezai T, Yu B, Millhauser G L, Jacobson M P, Lokey R S. Testing the conformational hypothesis of passive membrane permeability using synthetic cyclic peptide diastereomers. Journal of the American Chemical Society, 2006, 128(8): 2510–2511
|
27 |
Wang Q M, Shah N, Zhao J, Wang C, Zhao C, Liu L, Li L Y, Zhou F, Zheng J. Structural, morphological, and kinetic studies of β-amyloid peptide aggregation on self-assembled monolayers. Physical Chemistry Chemical Physics, 2011, 13(33): 15200–15210
|
28 |
Gordon D J, Sciarretta K L, Meredith S C. Inhibition of β-amyloid (40) fibrillogenesis and disassembly of β-amyloid (40) fibrils by short β-amyloid congeners containing N-methyl amino acids at alternate residues. Biochemistry, 2001, 40(28): 8237–8245
|
29 |
Ferrie J J, Gruskos J J, Goldwaser A L, Decker M E, Guarracino D A. A comparative protease stability study of synthetic macrocyclic peptides that mimic two endocrine hormones. Bioorganic & Medicinal Chemistry Letters, 2013, 23(4): 989–995
|
30 |
Yu R, Seymour V A L, Berecki G, Jia X, Akcan M, Adams D J, Kaas Q, Craik D J. Less is more: Design of a highly stable disulfide-deleted mutant of analgesic cyclic α-conotoxin Vc1.1. Scientific Reports, 2015, 5(1): 13264
|
31 |
Cheng P N, Liu C, Zhao M, Eisenberg D, Nowick J S. Amyloid β-sheet mimics that antagonize protein aggregation and reduce amyloid toxicity. Nature Chemistry, 2012, 4(11): 927–933
|
32 |
Cabaleiro-Lago C, Szczepankiewicz O, Linse S. The effect of nanoparticles on amyloid aggregation depends on the protein stability and intrinsic aggregation rate. Langmuir, 2012, 28(3): 1852–1857
|
33 |
Luo J H, Yu C H, Yu H X, Borstnar R, Kamerlin S C, Gräslund A, Abrahams J P, Wärmländer S K. Cellular polyamines promote amyloid-beta (Aβ) peptide fibrillation and modulate the aggregation pathways. ACS Chemical Neuroscience, 2013, 4(3): 454–462
|
34 |
Micsonai A, Wien F, Kernya L, Lee Y H, Goto Y, Réfrégiers M, Kardos J. Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy. Proceedings of the National Academy of Sciences of the United States of America, 2015, 112(24): 3095–3103
|
35 |
Choi H J, Huber A H, Weis W I. Thermodynamics of β-catenin-ligand interactions: The roles of the N- and C-terminal tails in modulating binding affinity. Journal of Biological Chemistry, 2006, 281(2): 1027–1038
|
36 |
Wiseman T, Williston S, Brandts J F, Lin L N. Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Analytical Biochemistry, 1989, 179(1): 131–137
|
37 |
Freyer M W, Lewis E A. Isothermal titration calorimetry: Experimental design, data analysis, and probing macromolecule/ligand binding and kinetic interactions. Methods in Cell Biology, 2008, 84: 79–113
|
38 |
Fotakis G, Timbrell J A. In vitro cytotoxicity assays: Comparison of LDH, neutral red, MTT and protein assay in hepatoma cell lines following exposure to cadmium chloride. Toxicology Letters, 2006, 160(2): 171–177
|
39 |
Gupta M, Bagaria A, Mishra A, Mathur P, Basu A, Ramakumar S, Chauhan V S. Self-assembly of a dipeptide-containing conformationally restricted dehydrophenylalanine residue to form ordered nanotubes. Advanced Materials, 2007, 19(6): 858–861
|
40 |
Huang R L, Su R X, Qi W, Zhao J, He Z M. Hierarchical, interface-induced self-assembly of diphenylalanine: Formation of peptide nanofibers and microvesicles. Nanotechnology, 2011, 22(24): 245609
|
41 |
Biancalana M, Koide S. Molecular mechanism of thioflavin-T binding to amyloid fibrils. Biochimica et Biophysica Acta (BBA)-Proteins Proteomics, 2010, 1804(7): 1405–1412
|
42 |
Cohen S I, Linse S, Luheshi L M, Hellstrand E, White D A, Rajah L, Otzen D E, Vendruscolo M, Dobson C M, Knowles T P. Proliferation of amyloid-β42 aggregates occurs through a secondary nucleation mechanism. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110(24): 9758–9763
|
43 |
Arosio P, Knowles T P, Linse S. On the lag phase in amyloid fibril formation. Physical Chemistry Chemical Physics, 2015, 17(12): 7606–7618
|
44 |
Zhao Z J, Zhu L, Li H Y, Cheng P, Peng J X, Yin Y D, Yang Y, Wang C, Hu Z Y, Yang Y L. Antiamyloidogenic activity of Aβ42-binding peptoid in modulating amyloid oligomerization. Small, 2017, 13(1): 1602857
|
45 |
Sugiura Y, Ikeda K, Nakano M. High membrane curvature enhances binding, conformational changes, and fibrillation of amyloid-β on lipid bilayer surfaces. Langmuir, 2015, 31(42): 11549–11557
|
46 |
Nagarathinam A, Höflinger P, Bühler A, Schäfer C, Mcgovern G, Jeffrey M, Staufenbiel M, Jucker M, Baumann F. Membrane-anchored Aβ accelerates amyloid formation and exacerbates amyloid-associated toxicity in mice. Journal of Neuroscience, 2013, 33(49): 19284–19294
|
47 |
Bartolini M, Bertucci C, Bolognesi M L, Cavalli A, Melchiorre C, Andrisano V. Insight into the kinetic of amyloid-β (1–42) peptide self-aggregation: Elucidation of inhibitors’ mechanism of action. ChemBioChem, 2007, 8(17): 2152–2161
|
48 |
Ehrnhoefer D E, Bieschke J, Boeddrich A, Herbst M, Masino L, Lurz R, Engemann S, Pastore A, Wanker E E. EGCG redirects amyloidogenic polypeptides into unstructured, off-pathway oligomers. Nature Structural & Molecular Biology, 2008, 15(6): 558–566
|
49 |
Du W J, Guo J J, Gao M T, Hu S Q, Dong X Y, Han Y F, Liu F F, Jiang S, Sun Y. Brazilin inhibits amyloid β-protein fibrillogenesis, remodels amyloid fibrils and reduces amyloid cytotoxicity. Scientific Reports, 2015, 5(1): 7992
|
50 |
Kumar S, Udgaonkar J B. Mechanisms of amyloid fibril formation by proteins. Current Science, 2010, 98(5): 639–656
|
51 |
Tu Y L, Ma S, Liu F F, Sun Y, Dong X Y. Hematoxylin inhibits amyloid β-protein fibrillation and alleviates amyloid-induced cytotoxicity. Journal of Physical Chemistry B, 2016, 120(44): 11360–11368
|
52 |
Qiang W, Yau W M, Luo Y, Mattson M P, Tycko R. Antiparallel β-sheet architecture in iowa-mutant β-amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America, 2012, 109(12): 4443–4448
|
53 |
Acerra N, Kad N M, Griffith D A, Ott S, Crowther D C, Mason J M. Retro-inversal of intracellular selected β-amyloid-interacting peptides: Implications for a novel Alzheimer’s disease treatment. Biochemistry, 2014, 53(13): 2101–2111
|
54 |
Liu J, Wang W, Zhang Q, Zhang S H, Yuan Z. Study on the efficiency and interaction mechanism of a decapeptide inhibitor of β-amyloid aggregation. Biomacromolecules, 2014, 15(3): 931–939
|
55 |
Ross P D, Subramanian S. Thermodynamics of protein association reactions: Forces contributing to stability. Biochemistry, 1981, 20(11): 3096–3102
|
56 |
Cairo C W, Strzelec A, Murphy R M, Kiessling L L. Affinity-based inhibition of β-amyloid toxicity. Biochemistry, 2002, 41(27): 8620–8629
|
57 |
Liao Y H, Chang Y J, Yoshiike Y, Chang Y C, Chen Y R. Negatively charged gold nanoparticles inhibit Alzheimer’s amyloid-β fibrillization, induce fibril dissociation, and mitigate neurotoxicity. Small, 2012, 8(23): 3631–3639
|
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