A survey on learning from graphs with heterophily: recent advances and future directions

Cheng-Hua GONG , Yao CHENG , Jian-Xiang YU , Can XU , Cai-Hua SHAN , Si-Qiang LUO , Xiang LI

Front. Comput. Sci. ›› 2026, Vol. 20 ›› Issue (2) : 2002314

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Front. Comput. Sci. ›› 2026, Vol. 20 ›› Issue (2) : 2002314 DOI: 10.1007/s11704-025-41059-z
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A survey on learning from graphs with heterophily: recent advances and future directions

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Abstract

Graphs are structured data that models complex relations between real-world entities. Heterophilic graphs, where linked nodes trend to have different labels or dissimilar features, have recently attracted significant attention and found many real-world applications. Meanwhile, increasing efforts have been made to advance learning from graphs with heterophily. Various graph heterophily measures, benchmark datasets, and learning paradigms are emerging rapidly. In this survey, we comprehensively review existing works on learning from graphs with heterophily. First, we overview over 500 publications, of which more than 300 are directly related to heterophilic graphs. After that, we survey existing metrics of graph heterophily and list recent benchmark datasets. Further, we systematically categorize existing methods based on a hierarchical taxonomy including GNN models, learning paradigms and practical applications. In addition, broader topics related to graph heterophily are also included. Finally, we discuss the primary challenges of existing studies and highlight promising avenues for future research.

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Keywords

graphs with heterophily / heterophilic graphs / graph neural networks / graph learning

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Cheng-Hua GONG, Yao CHENG, Jian-Xiang YU, Can XU, Cai-Hua SHAN, Si-Qiang LUO, Xiang LI. A survey on learning from graphs with heterophily: recent advances and future directions. Front. Comput. Sci., 2026, 20(2): 2002314 DOI:10.1007/s11704-025-41059-z

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The Author(s) 2025. This article is published with open access at link.springer.com and journal.hep.com.cn

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