DeepCRBP: improved predicting function of circRNA-RBP binding sites with deep feature learning

Zishan XU , Linlin SONG , Shichao LIU , Wen ZHANG

Front. Comput. Sci. ›› 2024, Vol. 18 ›› Issue (2) : 182907

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Front. Comput. Sci. ›› 2024, Vol. 18 ›› Issue (2) : 182907 DOI: 10.1007/s11704-023-2798-1
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DeepCRBP: improved predicting function of circRNA-RBP binding sites with deep feature learning

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Zishan XU, Linlin SONG, Shichao LIU, Wen ZHANG. DeepCRBP: improved predicting function of circRNA-RBP binding sites with deep feature learning. Front. Comput. Sci., 2024, 18(2): 182907 DOI:10.1007/s11704-023-2798-1

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Li H, Deng Z, Yang H, Pan X, Wei Z, Shen H B, Choi K S, Wang L, Wang S, Wu J . circRNA-binding protein site prediction based on multi-view deep learning, subspace learning and multi-view classifier. Briefings in Bioinformatics, 2022, 23( 1): bbab394

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Zhang K, Pan X, Yang Y, Shen H B . CRIP: predicting circRNA–RBP-binding sites using a codon-based encoding and hybrid deep neural networks. RNA, 2019, 25( 12): 1604–1615

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Yang Y, Hou Z, Ma Z, Li X, Wong K C . iCircRBP-DHN: identification of circRNA-RBP interaction sites using deep hierarchical network. Briefings in Bioinformatics, 2021, 22( 4): bbaa274

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