The splicing factor BRR2a functions as a repressor of stress-inducible genes

Jianfei Guo , Bangshing Wang , Huazhong Shi

Stress Biology ›› 2026, Vol. 6 ›› Issue (1) : 65

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Stress Biology ›› 2026, Vol. 6 ›› Issue (1) :65 DOI: 10.1007/s44154-026-00345-x
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The splicing factor BRR2a functions as a repressor of stress-inducible genes
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Abstract

Inducible gene expression is generally thought to be activated when transcription factors bind to promoter cis-elements, thereby recruiting the general transcriptional machinery to initiate gene transcription. However, the mechanisms that repress inducible genes under non-inducing conditions remain poorly understood. In this study, we identified a novel mutant, shi6, which exhibits slow growth, a dwarf phenotype, and elevated expression of a luciferase (LUC) reporter gene driven by a salt-inducible promoter. The shi6 mutant also displayed increased sensitivity to abscisic acid (ABA), NaCl, and methyl jasmonate. Map-based cloning revealed that SHI6 encodes the RNA helicase BRR2a, a core component required for pre-mRNA splicing and essential for plant embryogenesis. As expected, SHI6/BRR2a was required for the proper splicing of stress-inducible genes. Unexpectedly, SHI6/BRR2a also exhibited transcriptional activation activity in both yeast and Arabidopsis, suggesting that it associates with the transcriptional machinery and participates in gene transcription. Together, our findings demonstrate that SHI6/BRR2a is a dual-function protein that plays essential roles in both pre-mRNA splicing and the repression of stress-inducible genes under non-inducing conditions.

Keywords

Gene repression / DEAD-box RNA helicase / mRNA splicing / Abiotic stress / SHI6 / BRR2a

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Jianfei Guo, Bangshing Wang, Huazhong Shi. The splicing factor BRR2a functions as a repressor of stress-inducible genes. Stress Biology, 2026, 6 (1) : 65 DOI:10.1007/s44154-026-00345-x

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References

[1]

Absmeier E, Santos KF, Wahl MC. Functions and regulation of the Brr2 RNA helicase during splicing. Cell Cycle, 2016, 15: 3362-3377.

[2]

Alhabsi A, Ling Y, Crespi M, Reddy ASN, Mahfouz M. Alternative Splicing Dynamics in Plant Adaptive Responses to Stress. Annu Rev Plant Biol., 2025, 2025(76): 687.

[3]

Chinnusamy V, Ohta M, Kanrar S, Lee B, Hong X, Agarwal M, Zhu JK. ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev, 2003, 17: 1043-1054.

[4]

Chung JS, Zhu JK, Bressan RA, Hasegawa PM, Shi H. Reactive oxygen species mediate Na+-induced SOS1 mRNA stability in Arabidopsis. Plant J, 2008, 53: 554-565.

[5]

Jiang J, Wang B, Shen Y, Wang H, Feng Q, Shi H. The Arabidopsis RNA binding protein with K homology motifs, SHINY1, interacts with the C-terminal domain phosphatase-like 1 (CPL1) to repress stress-inducible gene expression. PLoS Genet, 2013, 9e1003625

[6]

Li X, Li C, Zhu J, Zhong S, Zhu H, Zhang X. Functions and mechanisms of RNA helicases in plants. J Exp Bot, 2023, 74: 2295-2310.

[7]

Li X, Zhong S, Li C, Yan X, Zhu J, Li Y, Wang Z, Peng X, Zhang X. RNA helicase Brr2a promotes miRNA biogenesis by properly remodelling secondary structure of pri-miRNAs. Nat Plants, 2024, 10: 1532-1547.

[8]

Mahrez W, Shin J, Muñoz-Viana R, Figueiredo DD, Trejo-Arellano MS, Exner V, Siretskiy A, Gruissem W, Köhler C, Hennig L. BRR2a affects flowering time via FLC splicing. PLoS Genet, 2016, 12e1005924

[9]

Nidumukkala S, Tayi L, Chittela RK, Vudem DR, Khareedu VR. DEAD box helicases as promising molecular tools for engineering abiotic stress tolerance in plants. Crit Rev Biotechnol, 2019, 39: 395-407.

[10]

Pandey S, Prasad A, Sharma N, Prasad M. Linking the plant stress responses with RNA helicases. Plant Sci, 2020, 299110607

[11]

Shi H, Bressan R. RNA extraction. Methods Mol Biol, 2006, 323: 345-348.

[12]

Tiwari SB, Hagen G, Guilfoyle T. The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell, 2003, 15: 533-543.

[13]

Tzafrir I, Pena-Muralla R, Dickerman A, Berg M, Rogers R, Hutchens S, Sweeney TC, McElver J, Aux G, Patton D, et al.Identification of genes required for embryo development in Arabidopsis. Plant Physiol, 2004, 135: 1206-1220.

[14]

Wang Y, Hu Q, Wu Z, Wang H, Han S, Jin Y, Zhou J, Zhang Z, Jiang J, Shen Y, et al.HISTONE DEACETYLASE 6 represses pathogen defence responses in Arabidopsis thaliana. Plant Cell Environ, 2017, 40: 2972-2986.

[15]

Wang B, Chai H, Zhong Y, Shen Y, Yang W, Chen J, Xin Z, Shi H. The DEAD-box RNA helicase SHI2 functions in repression of salt-inducible genes and regulation of cold-inducible gene splicing. J Exp Bot, 2020, 71: 1598-1613.

[16]

Wu Z, He L, Jin Y, Chen J, Shi H, Wang Y, Yang W. HISTONE DEACETYLASE 6 suppresses salicylic acid biosynthesis to repress autoimmunity. Plant Physiol, 2021, 187: 2592-2607.

[17]

Xiong S, Li J, Teng H, Cui P, He B. Alternative splicing regulation by plant SR proteins: molecular mechanisms, biological functions, and implications for crop improvement. Environ Exp Bot, 2026

[18]

Yoo S-D, Cho Y-H, Sheen J. Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc2007, 2: 1565-1572.

[19]

Zhang L, Li X, Hill RC, Qiu Y, Zhang W, Hansen KC, Zhao R. Brr2 plays a role in spliceosomal activation in addition to U4/U6 unwinding. Nucleic Acids Res, 2015, 43: 3286-3297.

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