Yersinia pseudotuberculosis secretes an Fe (II)-binding effector to evade calprotectin-mediated nutritional immunity

Qingyun Dai , Hongxin Guan , Jianan Huang , Jing Hou , Mengsi Zhang , Yudi Wang , Pengfei Zhang , Lei Xu , Huawei Gu , Yao Wang , Songying Ouyang , Xihui Shen

Stress Biology ›› 2026, Vol. 6 ›› Issue (1) : 29

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Stress Biology ›› 2026, Vol. 6 ›› Issue (1) :29 DOI: 10.1007/s44154-026-00304-6
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Yersinia pseudotuberculosis secretes an Fe (II)-binding effector to evade calprotectin-mediated nutritional immunity
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Abstract

Iron is an essential cofactor for core metabolic processes and is critical to both host physiology and invading pathogens. While the competition between host and pathogen for ferric iron [Fe (III)] and heme has been well characterized, microbial strategies to overcome Fe (II) limitation—particularly under calprotectin (CP)-mediated Fe (II) chelation—remain poorly understood. In this study, we show that Yersinia pseudotuberculosis (Yptb) employs its type VI secretion system 1 (T6SS1) to acquire Fe (II) through secretion of the Fe (II)-binding effector SfeP. Deletion of sfeP significantly reduced bacterial loads in wild-type mice but not in CP-deficient mice, highlighting its essential role in virulence under CP-imposed Fe (II) restriction. Mechanistically, SfeP acts as a proteinaceous ferrousophore that specifically interacts with the outer-membrane porin OmpF to facilitate Fe (II) uptake, and the resulting SfeP-mediated iron homeostasis contributes critically to bacterial resistance against oxidative and acidic stress. Together, these findings uncover a T6SS-dependent Fe (II)-scavenging pathway in which SfeP cooperates with OmpF to counteract host nutritional immunity and promote Yptb virulence. This work not only underscores the versatility of T6SS in metal acquisition and stress adaptation, but also highlights the physiological significance of CP-mediated Fe (II) sequestration in host defense against bacterial infection.

Keywords

Type VI secretion system (T6SS) / Ferrous iron transportation / Calprotectin / Nutritional immunity / OmpF / Oxidative stress / Acid stress

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Qingyun Dai, Hongxin Guan, Jianan Huang, Jing Hou, Mengsi Zhang, Yudi Wang, Pengfei Zhang, Lei Xu, Huawei Gu, Yao Wang, Songying Ouyang, Xihui Shen. Yersinia pseudotuberculosis secretes an Fe (II)-binding effector to evade calprotectin-mediated nutritional immunity. Stress Biology, 2026, 6(1): 29 DOI:10.1007/s44154-026-00304-6

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References

[1]

Adams PD, Afonine PV, Bunkóczi G, et al. . PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr, 2010, 66: 213-221

[2]

Atkinson S, Throup JP, Stewart GS, Williams P. A hierarchical quorum-sensing system in Yersinia pseudotuberculosis is involved in the regulation of motility and clumping. Mol Microbiol, 1999, 33: 1267-1277

[3]

Basler M, Ho BT, Mekalanos JJ. Tit-for-tat: type VI secretion system counterattack during bacterial cell-cell interactions. Cell, 2013, 152: 884-894

[4]

Brickman TJ, Armstrong SK. Iron and pH-responsive FtrABCD ferrous iron utilization system of Bordetella species. Mol Microbiol, 2012, 86: 580-593

[5]

Caillet-Saguy C, Piccioli M, Turano P, et al. . Mapping the interaction between the hemophore HasA and its outer membrane receptor HasR using CRINEPT-TROSY NMR spectroscopy. J Am Chem Soc, 2009, 131: 1736-1744

[6]

Chen XK, Li XY, Ha YF, et al. . Ferric uptake regulator provides a new strategy for acidophile adaptation to acidic ecosystems. Appl Environ Microbiol, 2020, 86 e00268-20

[7]

Cherrier MV, Cavazza C, Bochot C, et al. . Structural characterization of a putative endogenous metal chelator in the periplasmic nickel transporter NikA. Biochemistry, 2008, 47: 9937-9943

[8]

Chung LK, Park YH, Zheng Y, et al. . The Yersinia virulence factor YopM hijacks host kinases to inhibit type III effector-triggered activation of the pyrin inflammasome. Cell Host Microbe, 2016, 20: 296-306

[9]

Corbin BD, Seeley EH, Raab A, et al. . Metal chelation and inhibition of bacterial growth in tissue abscesses. Science, 2008, 319: 962-965

[10]

Cornelis P, Wei Q, Andrews SC, Vinckx T. Iron homeostasis and management of oxidative stress response in bacteria. Metallomics, 2011, 3: 540-549

[11]

Darby C. Uniquely insidious: Yersinia pestis biofilms. Trends Microbiol, 2008, 16: 158-164

[12]

Emsley P, Lohkamp B, Scott WG, Cowtan K. Features and development of Coot. Acta Crystallogr D Biol Crystallogr, 2010, 66: 486-501

[13]

Gallegos-Monterrosa R, Coulthurst SJ. The ecological impact of a bacterial weapon: microbial interactions and the type VI secretion system. FEMS Microbiol Rev, 2021, 45 fuab033

[14]

Ghigo JM, Létoffé S, Wandersman C. A new type of hemophore-dependent heme acquisition system of Serratia marcescens reconstituted in Escherichia coli. J Bacteriol, 1997, 179: 3572-3579

[15]

Giessen TW, Orlando BJ, Verdegaal AA, et al. . Large protein organelles form a new iron sequestration system with high storage capacity. Elife, 2019, 8 e46070

[16]

Grass G, Franke S, Taudte N, et al. . The metal permease ZupT from Escherichia coli is a transporter with a broad substrate spectrum. J Bacteriol, 2005, 187: 1604-1611

[17]

Guan J, Xiao X, Xu S, et al. . Roles of RpoS in Yersinia pseudotuberculosis stress survival, motility, biofilm formation and type VI secretion system expression. J Microbiol, 2015, 53: 633-642

[18]

Han Y, Wang T, Chen G, et al. . A Pseudomonas aeruginosa type VI secretion system regulated by CueR facilitates copper acquisition. PLoS Pathog, 2019, 15 e1008198

[19]

Ho BT, Dong TG, Mekalanos JJ. A view to a kill: the bacterial type VI secretion system. Cell Host Microbe, 2014, 15: 9-21

[20]

Hood MI, Skaar EP. Nutritional immunity: transition metals at the pathogen-host interface. Nat Rev Microbiol, 2012, 10: 525-537

[21]

Hu Y, Lu P, Wang Y, Ding L, Atkinson S, Chen S (2009) OmpR positively regulates urease expression to enhance acid survival of Yersinia pseudotuberculosis. Microbiology (Reading) 155:2522-2531. https://doi.org/10.1099/mic.0.028381-0

[22]

Fegan JE, Islam EA, Curran DM, Ng D, Au NYT, Currie EG, Zeppa JJ, Lam J, Schryvers AB, Moraes TF, Gray-Owen SD (2025) Rational selection of TbpB variants yields a bivalent vaccine with broad coverage against Neisseria gonorrhoeae. NPJ Vaccines 10. https://doi.org/10.1038/s41541-024-01054-0

[23]

Jiang F, Waterfield NR, Yang J, et al. . A Pseudomonas aeruginosa type VI secretion phospholipase D effector targets both prokaryotic and eukaryotic cells. Cell Host Microbe, 2014, 15: 600-610

[24]

Katoh H, Hagino N, Ogawa T. Iron-binding activity of FutA1 subunit of an ABC-type iron transporter in the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Cell Physiol, 2001, 42: 823-827

[25]

Kim H, Lee H, Shin D. The FeoC protein leads to high cellular levels of the Fe(II) transporter FeoB by preventing FtsH protease regulation of FeoB in Salmonella enterica. J Bacteriol, 2013, 195: 3364-3370

[26]

Krieg S, Huché F, Diederichs K, et al. . Heme uptake across the outer membrane as revealed by crystal structures of the receptor-hemophore complex. Proc Natl Acad Sci U S A, 2009, 106: 1045-1050

[27]

Kristensen CS, Eberl L, Sanchez-Romero JM, Givskov M, Molin S, De Lorenzo V (1995) Site-specific deletions of chromosomally located DNA segments with the multimer resolution system of broad-host-range plasmid RP4. J Bacteriol 177:52-58. https://doi.org/10.1128/jb.177.1.52-58.1995

[28]

Lau CKY, Krewulak KD, Vogel HJ. Bacterial ferrous iron transport: the Feo system. FEMS Microbiol Rev, 2016, 40: 273-298

[29]

Li C, Pan D, Li M, et al. . Aerobactin-mediated iron acquisition enhances biofilm formation, oxidative stress resistance, and virulence of Yersinia pseudotuberculosis. Front Microbiol, 2021, 12 699913

[30]

Li C, Zhu L, Wang D, et al. . T6SS secretes an LPS-binding effector to recruit OMVs for exploitative competition and horizontal gene transfer. ISME J, 2022, 16: 500-510

[31]

Lin J, Zhang W, Cheng J, et al. . A Pseudomonas T6SS effector recruits PQS-containing outer membrane vesicles for iron acquisition. Nat Commun, 2017, 8 14888

[32]

Lin J, Xu L, Yang J, et al. . Beyond dueling: roles of the type VI secretion system in microbiome modulation, pathogenesis and stress resistance. Stress Biol, 2021, 1 11

[33]

Liu JZ, Jellbauer S, Poe AJ, et al. . Zinc sequestration by the neutrophil protein calprotectin enhances Salmonella growth in the inflamed gut. Cell Host Microbe, 2012, 11: 227-239

[34]

Łoboda D, Rowińska-Żyrek M. Zinc binding sites in Pra1, a zincophore from Candida albicans. Dalton Trans, 2017, 46: 13695-13703

[35]

Luo J, Chu X, Jie J, et al. . Acinetobacter baumannii Kills Fungi via a Type VI DNase Effector. Mbio, 2023, 14 e0342022

[36]

Ma L-S, Hachani A, Lin J-S, et al. . Agrobacterium tumefaciens deploys a superfamily of type VI secretion DNase effectors as weapons for interbacterial competition in planta. Cell Host Microbe, 2014, 16: 94-104

[37]

Makui H, Roig E, Cole ST, et al. . Identification of the Escherichia coli K-12 Nramp orthologue (MntH) as a selective divalent metal ion transporter. Mol Microbiol, 2000, 35: 1065-1078

[38]

Milton DL, O'Toole R, Horstedt P, Wolf-Watz H (1996) Flagellin A is essential for the virulence of Vibrio anguillarum. J Bacteriol 178:1310-1319. https://doi.org/10.1128/jb.178.5.1310-1319.1996

[39]

Naikare H, Palyada K, Panciera R, et al. . Major role for FeoB in Campylobacter jejuni ferrous iron acquisition, gut colonization, and intracellular survival. Infect Immun, 2006, 74: 5433-5444

[40]

Nairz M, Weiss G. Iron in infection and immunity. Mol Aspects Med, 2020, 75 100864

[41]

Nakashige TG, Zhang B, Krebs C, Nolan EM. Human calprotectin is an iron-sequestering host-defense protein. Nat Chem Biol, 2015, 11: 765-771

[42]

Noinaj N, Cornelissen CN, Buchanan SK. Structural insight into the lactoferrin receptors from pathogenic Neisseria. J Struct Biol, 2013, 184: 83-92

[43]

Oh E, Andrews KJ, Jeon B. Enhanced biofilm formation by ferrous and ferric iron through oxidative stress in Campylobacter jejuni. Front Microbiol, 2018, 9 1204

[44]

Perry RD, Mier I, Fetherston JD. Roles of the Yfe and Feo transporters of Yersinia pestis in iron uptake and intracellular growth. Biometals, 2007, 20: 699-703

[45]

Pietrosiuk A, Lenherr ED, Falk S, et al. . Molecular basis for the unique role of the AAA+ chaperone ClpV in type VI protein secretion. J Biol Chem, 2011, 286: 30010-30021

[46]

Pukatzki S, Ma AT, Revel AT, et al. . Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin. Proc Natl Acad Sci U S A, 2007, 104: 15508-15513

[47]

Rosqvist R, Skurnik M, Wolf-Watz H (1988) Increased virulence of Yersinia pseudotuberculosis by two independent mutations. Nature 334:522-524. https://doi.org/10.1038/334522a0

[48]

Russell AB, Hood RD, Bui NK, et al. . Type VI secretion delivers bacteriolytic effectors to target cells. Nature, 2011, 475: 343-347

[49]

Atkinson S, Goldstone RJ, Joshua GW, Chang CY, Patrick HL, Cámara M, Wren BW, Williams P (2011) Biofilm development on Caenorhabditis elegans by Yersinia is facilitated by quorum sensing-dependent repression of type III secretion. PLoS Pathog 7:e1001250. https://doi.org/10.1371/journal.ppat.1001250

[50]

Schaible UE, Kaufmann SHE. Iron and microbial infection. Nat Rev Microbiol, 2004, 2: 946-953

[51]

Schalk IJ. Bacterial siderophores: diversity, uptake pathways and applications. Nat Rev Microbiol, 2025, 23: 24-40

[52]

Si M, Wang Y, Zhang B, et al. . The type VI secretion system engages a redox-regulated dual-functional heme transporter for zinc acquisition. Cell Rep, 2017, 20: 949-959

[53]

Si M, Zhao C, Burkinshaw B, et al. . Manganese scavenging and oxidative stress response mediated by type VI secretion system in Burkholderia thailandensis. Proc Natl Acad Sci U S A, 2017, 114: E2233-E2242

[54]

Skaar EP. The battle for iron between bacterial pathogens and their vertebrate hosts. PLoS Pathog, 2010, 6 e1000949

[55]

Song L, Xu L, Wu T, et al. . Trojan horselike T6SS effector TepC mediates both interference competition and exploitative competition. ISME J, 2024, 18 wrad028

[56]

Song L, Xu L, Zhang P, et al. . A dual-targeting T6SS DNase drives bacterial antagonism and eukaryotic apoptosis via the cGAS-STING-TNF axis. Adv Sci (Weinh), 2025, 12 e2504086

[57]

Sousa Gerós A, Simmons A, Drakesmith H, et al. . The battle for iron in enteric infections. Immunology, 2020, 161: 186-199

[58]

Straub KL, Benz M, Schink B. Iron metabolism in anoxic environments at near neutral pH. FEMS Microbiol Ecol, 2001, 34: 181-186

[59]

Tan L, Darby C. A movable surface: formation of Yersinia sp. biofilms on motile Caenorhabditis elegans. J Bacteriol, 2004, 186: 5087-5092

[60]

Tang J, Wang X, Chen S, et al. . Disruption of glucose homeostasis by bacterial infection orchestrates host innate immunity through NAD+/NADH balance. Cell Rep, 2024, 43 114648

[61]

Teigelkamp S, Bhardwaj RS, Roth J, et al. . Calcium-dependent complex assembly of the myeloic differentiation proteins MRP-8 and MRP-14. J Biol Chem, 1991, 266: 13462-13467

[62]

Trunk K, Peltier J, Liu Y-C, et al. . The type VI secretion system deploys antifungal effectors against microbial competitors. Nat Microbiol, 2018, 3: 920-931

[63]

Velayudhan J, Hughes NJ, McColm AA, et al. . Iron acquisition and virulence in Helicobacter pylori : a major role for FeoB, a high-affinity ferrous iron transporter. Mol Microbiol, 2000, 37: 274-286

[64]

Viollier E, Inglett PW, Hunter K, et al. . The ferrozine method revisited: Fe(II)/Fe(III) determination in natural waters. Appl Geochem, 2000, 15: 785-790

[65]

Vita N, Platsaki S, Baslé A, et al. . A four-helix bundle stores copper for methane oxidation. Nature, 2015, 525: 140-143

[66]

Wandersman C, Delepelaire P. Bacterial iron sources: from siderophores to hemophores. Annu Rev Microbiol, 2004, 58: 611-647

[67]

Wang H, Ding S, Dong Y, et al. . Biofilm formation of Salmonella serotypes in simulated meat processing environments and its relationship to cell characteristics. J Food Prot, 2013, 76: 1784-1789

[68]

Wang T, Si M, Song Y, et al. . Type VI secretion system transports Zn2+ to combat multiple stresses and host immunity. PLoS Pathog, 2015, 11 e1005020

[69]

Weber B, Hasic M, Chen C, et al. . Type VI secretion modulates quorum sensing and stress response in Vibrio anguillarum. Environ Microbiol, 2009, 11: 3018-3028

[70]

Xu S, Peng Z, Cui B, et al. . FliS modulates FlgM activity by acting as a non-canonical chaperone to control late flagellar gene expression, motility and biofilm formation in Yersinia pseudotuberculosis. Environ Microbiol, 2014, 16: 1090-1104

[71]

Yang X, Liu H, Zhang Y, Shen X. Roles of Type VI Secretion System in Transport of Metal Ions. Front Microbiol, 2021, 12 756136

[72]

Yang Y, Pan D, Tang Y, et al. . H3-T6SS of Pseudomonas aeruginosa PA14 contributes to environmental adaptation via secretion of a biofilm-promoting effector. Stress Biol, 2022, 2 55

[73]

Zackular JP, Chazin WJ, Skaar EP. Nutritional Immunity: S100 Proteins at the Host-Pathogen Interface. J Biol Chem, 2015, 290: 18991-18998

[74]

Zhang W, Wang Y, Song Y, et al. . A type VI secretion system regulated by OmpR in Yersinia pseudotuberculosis functions to maintain intracellular pH homeostasis. Environ Microbiol, 2013, 15: 557-569

[75]

Zhao W, Caro F, Robins W, Mekalanos JJ. Antagonism toward the intestinal microbiota and its effect on Vibrio cholerae virulence. Science, 2018, 359: 210-213

[76]

Zhu L, Xu L, Wang C, et al. . T6SS translocates a micropeptide to suppress STING-mediated innate immunity by sequestering manganese. Proc Natl Acad Sci U S A, 2021, 118 e2103526118

[77]

Zhu L, Zuo Y, Cui R, et al. . Interkingdom sensing of fungal tyrosol promotes bacterial antifungal T6SS activity in the murine gut. Nat Microbiol, 2026, 11: 240-255

[78]

Zuo Y, Li C, Yu D, et al. . A Fur-regulated type VI secretion system contributes to oxidative stress resistance and virulence in Yersinia pseudotuberculosis. Stress Biol, 2023, 3 2

[79]

Zygiel EM, Nolan EM. Exploring iron withholding by the innate immune protein human calprotectin. Acc Chem Res, 2019, 52: 2301-2308

Funding

National Key R&D Program of China(2021YFA0909600)

National Natural Science Foundation of China(31970114)

Shaanxi Fundamental Science Research Project for Chemistry & Biology(22JHZ008)

Special Open Fund of Key Laboratory of Experimental Marine Biology, Chinese Academy of Sciences(SKF2020NO1)

Marine Economic Development Special Fund of Fujian Province(FJHJF-L-2020-2)

project of University-Industry Cooperation from Fujian Provincial Department of Science and Technology(2020Y4007)

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