Molecular gatekeepers: eukaryotic translation factors decoding plant–virus dynamics for resistance engineering

Pankhuri Singhal , Shubham Saini , Oshin Saini , Ankit Bishnoi , Rashmi E.R. , Bharat Raj Meena , Jitender Singh , Kalenahalli Yogendra

Stress Biology ›› 2026, Vol. 6 ›› Issue (1) : 9

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Stress Biology ›› 2026, Vol. 6 ›› Issue (1) :9 DOI: 10.1007/s44154-025-00273-2
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Molecular gatekeepers: eukaryotic translation factors decoding plant–virus dynamics for resistance engineering

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Abstract

Plant viruses are among the most significant biotic stressors, posing a severe threat to crop productivity and global food security. Their success largely depends on the exploitation of host eukaryotic translation factors (eTFs), including initiation factors (eIFs) and elongation factors (eEFs), which act as molecular gatekeepers of the viral life cycle. Key members such as eIF4E, eIF(iso)4E, eIF4G, eEF1A, and eEF1B have been identified as susceptibility factors that mediate viral translation, replication, and systemic movement. Viruses have co-evolved specialized proteins and RNA elements, including VPg and IRES structures, to hijack these host factors and circumvent plant defense barriers. This review synthesizes current understanding of the mechanistic roles of eTFs in virus–host dynamics and highlights strategies to mitigate viral stress. Approaches such as natural allele mining, induced mutagenesis, TILLING/EcoTILLING, RNA interference, and precise genome editing with CRISPR/Cas systems are explored as practical tools for reducing susceptibility. Targeted manipulation of eTFs offers a promising avenue to reprogram plants for resistance while maintaining essential cellular functions. By integrating molecular biology with applied strategies, we propose an eTF-centered framework for resistance breeding within a broader stress biology perspective. Future research combining functional genomics, synthetic biology, and breeding innovation will be pivotal in delivering broad-spectrum, durable, and environmentally sustainable resistance to plant viral stress.

Keywords

Eukaryotic translation initiation factors / Virus translation / Movement / Replication / Eukaryotic translation elongation factors

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Pankhuri Singhal, Shubham Saini, Oshin Saini, Ankit Bishnoi, Rashmi E.R., Bharat Raj Meena, Jitender Singh, Kalenahalli Yogendra. Molecular gatekeepers: eukaryotic translation factors decoding plant–virus dynamics for resistance engineering. Stress Biology, 2026, 6(1): 9 DOI:10.1007/s44154-025-00273-2

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References

[1]

Abbas W, Kumar A, Herbein G (2015) The eEF1A proteins: at the crossroads of oncogenesis, apoptosis, and viral infections. Front Oncol 5:75. https://doi.org/10.3389/fonc.2015.00075

[2]

Ala-Poikela M, Goytia E, Haikonen Tet al.. Helper component proteinase of the genus potyvirus is an interaction partner of translation initiation factors eIF(iso)4E and eIF4E and contains a 4E binding motif. J Virol, 2011, 85: 6784-6794

[3]

Albar L, Bangratz-Reyser M, Hébrard Eet al.. Mutations in the eIF(iso)4G translation initiation factor confer high resistance of rice to Rice yellow mottle virus. Plant J, 2006, 47: 417-426

[4]

Ali Z, Abul-faraj A, Piatek M, Mahfouz MM. Activity and specificity of TRV-mediated gene editing in plants. Plant Signal Behav, 2015, 10 e1044191

[5]

Andersen GR, Nyborg J. Structural studies of eukaryotic elongation factors. Cold Spring Harb Symp Quant Biol, 2001, 66: 425-438

[6]

Andrade M, Abe Y, Nakahara KS, Uyeda I. The cyv-2 resistance to Clover yellow vein virus in pea is controlled by the eukaryotic initiation factor 4E. J Gen Plant Pathol, 2009, 75: 241-249

[7]

Annamalai P, Rao ALN. In vivo packaging of Brome mosaic virus RNA3, but not RNAs 1 and 2, is dependent on a cis -acting 3′ tRNA-like structure. J Virol, 2007, 81: 173-181

[8]

Arroyo R. Impaired cell-to-cell movement of potato virus Y in pepper plants carrying the ya (pr21) resistance gene. Mol Plant-Microbe Interact, 1996, 9: 314

[9]

Ashby JA, Stevenson CEM, Jarvis GEet al.. Structure-based mutational analysis of eIF4E in relation to sbm1 resistance to pea seed-borne mosaic virus in pea. PLoS ONE, 2011, 6 e15873

[10]

Atarashi H, Jayasinghe WH, Kwon J, Kim H, Taninaka Y, Igarashi M, Ito K, Yamada T, Masuta C, Nakahara KS (2020) Artificially edited alleles of the eukaryotic translation initiation factor 4E1 gene differentially reduce susceptibility to cucumber mosaic virus and potato virus Y in tomato. Front Microbiol 11:564310. https://doi.org/10.3389/fmicb.2020.564310

[11]

Azeez SS, Hamad RS, Hamad BK, Shekha MS, Bergsten P (2024) Advances in CRISPR-Cas technology and its applications: revolutionising precision medicine. Front Genome Ed 6:1509924. https://doi.org/10.3389/fgeed.2024.1509924

[12]

Baranov DY, Dolgov SV, Timerbaev VR. Knockout of the tomato translational elongation factor using CRISPR-Cas9 technology. Ecol Genet, 2023, 21 47–47

[13]

Barroso K, Milagres J, Tracton Tet al.. The genomic region matters when synthesizing dsRNA for plant virus suppression via RNAi. Virol J, 2025, 22: 241

[14]

Bastet A, Robaglia C, Gallois J-L. eIF4E resistance: natural variation should guide gene editing. Trends Plant Sci, 2017, 22: 411-419

[15]

Bastet A, Zafirov D, Giovinazzo Net al.. Mimicking natural polymorphism in eIF 4E by CRISPR -Cas9 base editing is associated with resistance to potyviruses. Plant Biotechnol J, 2019, 17: 1736-1750

[16]

Bastin M, Hall TC. Interaction of elongation factor 1 with aminoacylated brome mosaic virus and tRNA’s. J Virol, 1976, 20: 117-122

[17]

Batten JS, Desvoyes B, Yamamura Y, Scholthof K-BG. A translational enhancer element on the 3′-proximal end of the Panicum mosaic virus genome. FEBS Lett, 2006, 580: 2591-2597

[18]

Beauchemin C, Boutet N, Laliberté J-F. Visualization of the interaction between the precursors of VPg, the viral protein linked to the genome of Turnip mosaic virus, and the translation eukaryotic initiation factor iso 4E in planta. J Virol, 2007, 81: 775-782

[19]

Bhardwaj U, Powell P, Goss DJ. Eukaryotic initiation factor (eIF) 3 mediates Barley Yellow Dwarf Viral mRNA 3′–5′ UTR interactions and 40S ribosomal subunit binding to facilitate cap-independent translation. Nucleic Acids Res, 2019, 47: 6225-6235

[20]

Blanco-Pérez M, Pérez-Cañamás M, Ruiz L, Hernández C. Efficient translation of Pelargonium line pattern virus RNAs relies on a TED-like 3´-translational enhancer that communicates with the corresponding 5´-region through a long-distance RNA-RNA interaction. PLoS ONE, 2016, 11 e0152593

[21]

Boisnard A, Albar L, Thiéméle Det al.. Evaluation of genes from eIF4E and eIF4G multigenic families as potential candidates for partial resistance QTLs to Rice yellow mottle virus in rice. Theor Appl Genet, 2007, 116: 53-62

[22]

Browning KS (1996) The plant translational apparatus. Plant Mol Biol 32(1-2):107–144. https://doi.org/10.1007/s00122-007-0646-6

[23]

Browning KS. Plant translation initiation factors: it is not easy to be green. Biochem Soc Trans, 2004, 32: 589-591

[24]

Bruun-Rasmussen M, Møller IS, Tulinius Get al.. The same allele of translation initiation factor 4E mediates resistance against two Potyvirus spp. in Pisum sativum. Mol Plant-Microbe Interact, 2007, 20: 1075-1082

[25]

Bush MS, Hutchins AP, Jones AMEet al.. Selective recruitment of proteins to 5′ cap complexes during the growth cycle in Arabidopsis. Plant J, 2009, 59: 400-412

[26]

Carino EJ, Scheets K, Miller WA (2020) The RNA of maize chlorotic mottle virus, an obligatory component of maize lethal necrosis disease, is translated via a variant panicum mosaic virus-like cap-independent translation element. J Virol 94(22):e01005–e01020. https://doi.org/10.1128/JVI.01005-20

[27]

Cavatorta J, Perez KW, Gray SMet al.. Engineering virus resistance using a modified potato gene. Plant Biotechnol J, 2011, 9: 1014-1021

[28]

Chandrasekaran J, Brumin M, Wolf Det al.. Development of broad virus resistance in non-transgenic cucumber using CRISPR/Cas9 technology. Mol Plant Pathol, 2016, 17: 1140-1153

[29]

Charron C, Nicolaï M, Gallois Jet al.. Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg. Plant J, 2008, 54: 56-68

[30]

Chattopadhyay M, Shi K, Yuan X, Simon AE. Long-distance kissing loop interactions between a 3′ proximal Y-shaped structure and apical loops of 5′ hairpins enhance translation of Saguaro cactus virus. Virology, 2011, 417: 113-125

[31]

Chen R, Yang M, Tu Z, Xie F, Chen J, Luo T, Hu X, Nie B, He C (2022) Eukaryotic translation initiation factor 4E family member nCBP facilitates the accumulation of TGB-encoding viruses by recognizing the viral coat protein in potato and tobacco. Front Plant Sci 13. https://doi.org/10.3389/fpls.2022.946873

[32]

Chen S-C, Olsthoorn RCL. In vitro and in vivo studies of the RNA conformational switch in Alfalfa mosaic virus. J Virol, 2010, 84: 1423-1429

[33]

Chen X, He L, Xu Met al.. Binding between elongation factor 1A and the 3ʹ-UTR of Chinese wheat mosaic virus is crucial for virus infection. Mol Plant Pathol, 2021, 22: 1383-1398

[34]

Chen Z, Wang F, Chen B, Wu G, Tian D, Yuan Q, Qiu S, Zhai Y, Chen J, Zheng H, Yan F (2024) Turnip mosaic virus NIb weakens the function of eukaryotic translation initiation factor 6 facilitating viral infection in Nicotiana benthamiana. Mol Plant Pathol 25. https://doi.org/10.1111/mpp.13434

[35]

Choudhary N, Suresh S (2020) Plant translation factors and virus resistance. In: Applied plant virology. Academic Press. https://doi.org/10.1016/B978-0-12-818654-1.00047-5

[36]

Colussi TM, Costantino DA, Zhu Jet al.. Initiation of translation in bacteria by a structured eukaryotic IRES RNA. Nature, 2015, 519: 110-113

[37]

Comai L, Young K, Till BJet al.. Efficient discovery of DNA polymorphisms in natural populations by ecotilling. Plant J, 2004, 37: 778-786

[38]

Contreras-Paredes CA, Silva-Rosales L, Daròs J-Aet al.. The absence of eukaryotic initiation factor eIF(iso)4E affects the systemic spread of a Tobacco etch virus isolate in Arabidopsis thaliana. Mol Plant-Microbe Interact, 2013, 26: 461-470

[39]

Damaris Ajayi, Olalekan Amoo, Gift Maureen Obunukwu (2024) Crispr and plant pathology: revolutionizing disease resistance in crops. World J Adv Res Rev 24:044–060. https://doi.org/10.30574/wjarr.2024.24.1.2996

[40]

Danthinne X, Seurinck J, Meulewaeter Fet al.. The 3’ untranslated region of satellite tobacco necrosis virus RNA stimulates translation in vitro. Mol Cell Biol, 1993, 13: 3340-3349

[41]

Das PR, Sherif SM (2020) Application of exogenous dsRNAs-induced RNAi in agriculture: challenges and triumphs. Front Plant Sci 11:946. https://doi.org/10.3389/fpls.2020.00946

[42]

Davis WG, Blackwell JL, Shi P-Y, Brinton MA. Interaction between the cellular protein eEF1A and the 3′-terminal stem-loop of West Nile virus genomic RNA facilitates viral minus-strand RNA synthesis. J Virol, 2007, 81: 10172-10187

[43]

Diaz-Pendon JA, Truniger V, Nieto Cet al.. Advances in understanding recessive resistance to plant viruses. Mol Plant Pathol, 2004, 5: 223-233

[44]

Dreher TW. Role of tRNA-like structures in controlling plant virus replication. Virus Res, 2009, 139: 217-229

[45]

Du Z, Alekhina OM, Vassilenko KS, Simon AE. Concerted action of two 3′ cap-independent translation enhancers increases the competitive strength of translated viral genomes. Nucleic Acids Res, 2017, 45: 9558-9572

[46]

Duan H, Richael C, Rommens CM. Overexpression of the wild potato eIF4E-1 variant Eva1 elicits potato virus Y resistance in plants silenced for native eIF4E-1. Transgenic Res, 2012, 21: 929-938

[47]

Duprat A, Caranta C, Revers Fet al.. The Arabidopsis eukaryotic initiation factor (iso)4E is dispensable for plant growth but required for susceptibility to potyviruses. Plant J, 2002, 32: 927-934

[48]

Eskelin K, Hafrén A, Rantalainen KI, Mäkinen K. Potyviral VPg enhances viral RNA translation and inhibits reporter mRNA translation in planta. J Virol, 2011, 85: 9210-9221

[49]

Estevan J, Maréna A, Callot Cet al.. Specific requirement for translation initiation factor 4E or its isoform drives plant host susceptibility to Tobacco etch virus. BMC Plant Biol, 2014, 14: 67

[50]

Fabian MR, White KA. 5′-3′ RNA-RNA interaction facilitates cap- and poly(A) tail-independent translation of tomato bushy stunt virus mRNA. J Biol Chem, 2004, 279: 28862-28872

[51]

Fidan H, Calis O, Ari E, Atasayar A, Sarikaya P, Tek MI, Izmirli A, Oz Y, Firat G (2023) Knockout of elF4E using CRISPR/Cas9 for large-scale production of resistant cucumber cultivar against WMV, ZYMV, and PRSV. Front Plant Sci 14:1143813. https://doi.org/10.3389/fpls.2023.1143813

[52]

Gallie DR. Cap-independent translation conferred by the 5′ leader of Tobacco etch virus is eukaryotic initiation factor 4G dependent. J Virol, 2001, 75: 12141-12152

[53]

Gallie DR, Kado CI. A translational enhancer derived from tobacco mosaic virus is functionally equivalent to a Shine-Dalgarno sequence. Proc Natl Acad Sci, 1989, 86: 129-132

[54]

Gallie DR, Walbot V. RNA pseudoknot domain of tobacco mosaic virus can functionally substitute for a poly(A) tail in plant and animal cells. Genes Dev, 1990, 4: 1149-1157

[55]

Gallie DR, Sleat DE, Watts JWet al.. The 5’-leader sequence of tobacco mosaic virus RNA enhances the expression of foreign gene transcripts in vitro and in vivo. Nucleic Acids Res, 1987, 15: 3257-3273

[56]

Gallie DR, Feder JN, Schimke RT, Walbot V. Functional analysis of the tobacco mosaic virus tRNA-like structure in cytoplasmic gene regulation. Nucleic Acids Res, 1991, 19: 5031-5036

[57]

Gandhi K, Suppaiah R, Murugesan S, Krishnan N. RNA interference: a novel technology for virus disease management in crop plants. Madras Agric J, 2021, 108: 1-4

[58]

Gao Z, Johansen E, Eyers Set al.. The potyvirus recessive resistance gene, sbm1, identifies a novel role for translation initiation factor eIF4E in cell-to-cell trafficking. Plant J, 2004, 40: 376-385

[59]

Gao F, Kasprzak W, Stupina VAet al.. A ribosome-binding, 3′ translational enhancer has a T-shaped structure and engages in a long-distance RNA-RNA interaction. J Virol, 2012, 86: 9828-9842

[60]

Gao F, Gulay SP, Kasprzak Wet al.. The kissing-loop T-shaped structure translational enhancer of Pea enation mosaic virus can bind simultaneously to ribosomes and a 5′ proximal hairpin. J Virol, 2013, 87: 11987-12002

[61]

Gao F, Alekhina OM, Vassilenko KS, Simon AE. Unusual dicistronic expression from closely spaced initiation codons in an umbravirus subgenomic RNA. Nucleic Acids Res, 2018, 46: 11726-11742

[62]

Gao L, Luo J, Ding Xet al.. Soybean RNA interference lines silenced for eIF4E show broad potyvirus resistance. Mol Plant Pathol, 2020, 21: 303-317

[63]

Gauffier C, Lebaron C, Moretti Aet al.. A TILLING approach to generate broad‐spectrum resistance to potyviruses in tomato is hampered by eIF4E gene redundancy. Plant J, 2016, 85: 717-729

[64]

Gazo BM, Murphy P, Gatchel JR, Browning KS. A novel interaction of cap-binding protein complexes eukaryotic initiation factor (eIF) 4F and eIF(iso)4F with a region in the 3′-untranslated region of satellite tobacco necrosis virus. J Biol Chem, 2004, 279: 13584-13592

[65]

Geng G, Wang D, Liu Zet al.. Translation of plant RNA viruses. Viruses, 2021, 13 2499

[66]

German-Retana S, Walter J, Doublet Bet al.. Mutational analysis of plant cap-binding protein eIF4E reveals key amino acids involved in biochemical functions and potyvirus infection. J Virol, 2008, 82: 7601-7612

[67]

Ghavami S, Pandi A (2021) CRISPR interference and its applications. Prog Mol Biol Transl Sci 180:123–140. https://doi.org/10.1016/bs.pmbts.2021.01.007

[68]

Gomez MA, Lin ZD, Moll Tet al.. Simultaneous CRISPR/Cas9 mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 reduces cassava brown streak disease symptom severity and incidence. Plant Biotechnol J, 2019, 17: 421-434

[69]

Gross JD, Moerke NJ, von der Haar Tet al.. Ribosome loading onto the mRNA cap is driven by conformational coupling between eIF4G and eIF4E. Cell, 2003, 115: 739-750

[70]

Guo J, Jin Z, Yang Xet al.. Eukaryotic initiation factor 6, an evolutionarily conserved regulator of ribosome biogenesis and protein translation. Plant Signal Behav, 2011, 6: 766-771

[71]

Gutierrez Sanchez PA, Babujee L, Jaramillo Mesa Het al.. Overexpression of a modified eIF4E regulates potato virus Y resistance at the transcriptional level in potato. BMC Genomics, 2020, 21: 18

[72]

Hahn F, Sanjurjo Loures L, Sparks CAet al.. Efficient CRISPR/Cas-mediated targeted mutagenesis in spring and winter wheat varieties. Plants, 2021, 10: 1481

[73]

Halder K, Chaudhuri A, Abdin MZ, Majee M, Datta A (2022) RNA interference for improving disease resistance in plants and its relevance in this clustered regularly interspaced short palindromic repeats-dominated era in terms of dsRNA-based biopesticides. Front Plant Sci 13:885128. https://doi.org/10.3389/fpls.2022.885128

[74]

Hann LE, Gehrke L. Mrnas containing the unstructured 5’ leader sequence of alfalfa mosaic virus RNA 4 translate inefficiently in lysates from poliovirus-infected HeLa cells. J Virol, 1995, 69: 4986-4993

[75]

Hart JP, Griffiths PD. A series of eIF4E alleles at the Bc-3 locus are associated with recessive resistance to Clover yellow vein virus in common bean. Theor Appl Genet, 2013, 126: 2849-2863

[76]

Hébrard E, Poulicard N, Gérard Cet al.. Direct interaction between the Rice yellow mottle virus (RYMV) VPg and the central domain of the Rice eIF(iso)4G1 factor correlates with rice susceptibility and RYMV virulence. Mol Plant-Microbe Interact, 2010, 23: 1506-1513

[77]

Helderman T, Deurhof L, Bertran Aet al.. An isoform of the eukaryotic translation elongation factor 1A (eEF1a) acts as a pro-viral factor required for Tomato spotted wilt virus disease in Nicotiana benthamiana. Viruses, 2021, 13: 2190

[78]

Henikoff S, Till BJ, Comai L. Tilling. Traditional mutagenesis meets functional genomics. Plant Physiol, 2004, 135: 630-636

[79]

Hilaire J, Tindale S, Jones Get al.. Risk perception associated with an emerging agri-food risk in Europe: plant viruses in agriculture. Agric Food Secur, 2022, 11: 21

[80]

Hoffie RE, Otto I, Perovic D, Budhagatapalli N, Habekuß A, Ordon F, Kumlehn J (2021) Targeted knockout of eukaryotic translation initiation factor 4E confers bymovirus resistance in winter barley. Front Genome Ed 3:784233. https://doi.org/10.3389/fgeed.2021.784233

[81]

Hopkins MT, Lampi Y, Wang T-Wet al.. Eukaryotic translation initiation factor 5A is involved in pathogen-induced cell death and development of disease symptoms in Arabidopsis. Plant Physiol, 2008, 148: 479-489

[82]

Huang T-S, Wei T, Laliberteݩ J-F, Wang A. A host RNA helicase-like protein, AtRH8, interacts with the potyviral genome-linked protein, VPg, associates with the virus accumulation complex, and is essential for infection. Plant Physiol, 2009, 152: 255-266

[83]

Hwang J, Li J, Liu W-Yet al.. Double mutations in eIF4E and eIFiso4E confer recessive resistance to chilli veinal mottle virus in pepper. Mol Cells, 2009, 27: 329-336

[84]

Hwang J, Oh C-S, Kang B-C. Translation elongation factor 1B (eEF1B) is an essential host factor for Tobacco mosaic virus infection in plants. Virology, 2013, 439: 105-114

[85]

Hwang J, Lee S, Lee JHet al.. Plant translation elongation factor 1Bβ facilitates potato virus X (PVX) infection and interacts with PVX triple gene block protein 1. PLoS ONE, 2015, 10 e0128014

[86]

Ibiza VP, Cañizares J, Nuez F. Ecotilling in Capsicum species: searching for new virus resistances. BMC Genomics, 2010, 11 631

[87]

Ilyas M, Du Z, Simon AE (2021) Opium poppy mosaic virus has an Xrn-resistant, translated subgenomic RNA and a BTE 3′ CITE. J Virol 95(9):e02109–e02120. https://doi.org/10.1128/JVI.02109-20

[88]

Ivanov KI, Eskelin K, Lõhmus A, Mäkinen K. Molecular and cellular mechanisms underlying potyvirus infection. J Gen Virol, 2014, 95: 1415-1429

[89]

Jaramillo-Mesa H, Gannon M, Holshbach E, Zhang J, Roberts R, Buettner M, Rakotondrafara AM (2019) The triticum mosaic virus internal ribosome entry site relies on a picornavirus-like YX-AUG motif to designate the preferred translation initiation site and to likely target the 18S rRNA. J Virol 93(5):e01705–e01718. https://doi.org/10.1128/JVI.01705-18

[90]

Jenner CE, Nellist CF, Barker GC, Walsh JA. Turnip mosaic virus (TuMV) is able to use alleles of both eIF4E and eIF(iso)4E from multiple loci of the diploid Brassica rapa. Mol Plant-Microbe Interact, 2010, 23: 1498-1505

[91]

Jeong H-J, Kwon J-K, Pandeya Det al.. A survey of natural and ethyl methane sulfonate-induced variations of eIF4E using high-resolution melting analysis in Capsicum. Mol Breed, 2012, 29: 349-360

[92]

Jiang J, Laliberté J-F. The genome-linked protein VPg of plant viruses—a protein with many partners. Curr Opin Virol, 2011, 1: 347-354

[93]

Julio E, Cotucheau J, Decorps Cet al.. A eukaryotic translation initiation factor 4E (eIF4E) is responsible for the “va” tobacco recessive resistance to potyviruses. Plant Mol Biol Rep, 2015, 33: 609-623

[94]

Kan J, Cai Y, Cheng Cet al.. CRISPR/Cas9-guided knockout of eIF4E improves wheat yellow mosaic virus resistance without yield penalty. Plant Biotechnol J, 2023, 21: 893-895

[95]

Kang B, Yeam I, Frantz JDet al.. The pvr1 locus in Capsicum encodes a translation initiation factor eIF4E that interacts with tobacco etch virus VPg. Plant J, 2005, 42: 392-405

[96]

Kang B, Yeam I, Li Het al.. Ectopic expression of a recessive resistance gene generates dominant potyvirus resistance in plants. Plant Biotechnol J, 2007, 5: 526-536

[97]

Kang B, Venkatesh J, Lee J-Het al.. CRISPR/Cas9-mediated editing of eukaryotic elongation factor 1B gamma (eEF1Bγ) reduces tobacco etch virus accumulation in Nicotiana benthamiana. Plant Cell Rep, 2025, 44: 62

[98]

Kanyuka K, Druka A, Caldwell DGet al.. Evidence that the recessive bymovirus resistance locus rym 4 in barley corresponds to the eukaryotic translation initiation factor 4E gene. Mol Plant Pathol, 2005, 6: 449-458

[99]

Keima T, Hagiwara-Komoda Y, Hashimoto Met al.. Deficiency of the eIF4E isoform nCBP limits the cell-to-cell movement of a plant virus encoding triple-gene-block proteins in Arabidopsis thaliana. Sci Rep, 2017, 7: 39678

[100]

Khan MA, Miyoshi H, Gallie DR, Goss DJ. Potyvirus genome-linked protein, VPg, directly affects wheat germ in vitro translation. J Biol Chem, 2008, 283: 1340-1349

[101]

Khan MA, Yumak S, Miyoshi H. Poly(A)-binding protein promotes VPg-dependent translation of potyvirus through enhanced binding of phosphorylated eIFiso4F and eIFiso4F∙eIF4B. PLoS ONE, 2024, 19 e0300287

[102]

Kidou SI, Ejiri SI. (1998) Isolation, characterization and mRNA expression of four cDNAs encoding translation elongation factor 1A from rice (Oryza sativa L.). Plant Mol Biol 36:137–148. https://doi.org/10.1023/a:1005960721762

[103]

Kim J, Kang W, Hwang Jet al.. Transgenic B rassica rapa plants over-expressing eIF(iso)4E variants show broad-spectrum Turnip mosaic virus ( TuMV ) resistance. Mol Plant Pathol, 2014, 15: 615-626

[104]

Komoda K, Ishibashi K, Kawamura-Nagaya K, Ishikawa M. Possible involvement of eEF1A in Tomato spotted wilt virus RNA synthesis. Virology, 2014, 468: 81-87

[105]

Kovalev N, Nagy PD. The expanding functions of cellular helicases: the tombusvirus RNA replication enhancer co-opts the plant eIF4AIII-like AtRH2 and the DDX5-like AtRH5 DEAD-box RNA helicases to promote viral asymmetric RNA replication. PLoS Pathog, 2014, 10 e1004051

[106]

Kovalev N, Barajas D, Nagy PD. Similar roles for yeast Dbp2 and Arabidopsis RH20 DEAD-box RNA helicases to Ded1 helicase in tombusvirus plus-strand synthesis. Virology, 2012, 432: 470-484

[107]

Kovalev N, Pogany J, Nagy PD. A co-opted DEAD-box RNA helicase enhances Tombusvirus plus-strand synthesis. PLoS Pathog, 2012, 8 e1002537

[108]

Krab IM, Caldwell C, Gallie DR, Bol JF. Coat protein enhances translational efficiency of Alfalfa mosaic virus RNAs and interacts with the eIF4G component of initiation factor eIF4F. J Gen Virol, 2005, 86: 1841-1849

[109]

Kraft JJ, Treder K, Peterson MS, Miller WA. Cation-dependent folding of 3′ cap-independent translation elements facilitates interaction of a 17-nucleotide conserved sequence with eIF4G. Nucleic Acids Res, 2013, 41: 3398-3413

[110]

Kraft J, Peterson M, Cho Set al.. The 3′ untranslated region of a plant viral RNA directs efficient cap-independent translation in plant and mammalian systems. Pathogens, 2019, 8: 28

[111]

Kumar S, Abebie B, Kumari Ret al.. Development of PVY resistance in tomato by knockout of host eukaryotic initiation factors by CRISPR-Cas9. Phytoparasitica, 2022, 50: 743-756

[112]

Kuroiwa K, Danilo B, Perrot Let al.. An iterative gene-editing strategy broadens eIF4E1 genetic diversity in Solanum lycopersicum and generates resistance to multiple potyvirus isolates. Plant Biotechnol J, 2023, 21: 918-930

[113]

Le NT, Tran HT, Bui TPet al.. Simultaneously induced mutations in eIF4E genes by CRISPR/Cas9 enhance PVY resistance in tobacco. Sci Rep, 2022, 12: 14627

[114]

Leastro MO, Kitajima EW, Pallas V, Sánchez-Navarro JA. From darkness to light: genetic manipulation of an atypical plant virus unveils key insights into kitavirus biology, highlighting capsid protein and eIF4A engagement to drive viral infection. PLoS Pathog, 2025, 21 e1013388

[115]

Lee J-H, Muhsin M, Atienza GAet al.. Single nucleotide polymorphisms in a gene for translation initiation factor (eIF4G) of rice ( Oryza sativa ) associated with resistance to Rice tungro spherical virus. Mol Plant-Microbe Interact, 2010, 23: 29-38

[116]

Lee YR, Siddique MI, Kim DS, Lee ES, Han K, Kim SG, Lee HE (2023) CRISPR/Cas9-mediated gene editing to confer turnip mosaic virus (TuMV) resistance in Chinese cabbage (Brassica rapa). Hortic Res 10(6):uhad078. https://doi.org/10.1093/hr/uhad078

[117]

Lellis AD, Kasschau KD, Whitham SA, Carrington JC. Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection. Curr Biol, 2002, 12: 1046-1051

[118]

Léonard S, Plante D, Wittmann Set al.. Complex formation between Potyvirus VPg and translation eukaryotic initiation factor 4E correlates with virus infectivity. J Virol, 2000, 74: 7730-7737

[119]

Li Z, Pogany J, Panavas Tet al.. Translation elongation factor 1A is a component of the tombusvirus replicase complex and affects the stability of the p33 replication co-factor. Virology, 2009, 385: 245-260

[120]

Li Z, Pogany J, Tupman Set al.. Translation elongation factor 1A facilitates the assembly of the Tombusvirus replicase and stimulates minus-strand synthesis. PLoS Pathog, 2010, 6 e1001175

[121]

Li Y, Xiong R, Bernards M, Wang A. Recruitment of Arabidopsis RNA helicase AtRH9 to the viral replication complex by viral replicase to promote Turnip mosaic virus replication. Sci Rep, 2016, 6: 30297

[122]

Li M, Zhang X, Huang K, Du Z. Identification of host factors interacting with a γ-shaped RNA element from a plant virus-associated satellite RNA. Viruses, 2023, 15: 2039

[123]

Li M, Qiu Y, Zhu Det al.. Editing eIF4E in the watermelon genome using CRISPR/Cas9 technology confers resistance to ZYMV. Int J Mol Sci, 2024, 25 11468

[124]

Lin JW, Ding MP, Hsu YH, Tsai CH. Chloroplast phosphoglycerate kinase, a gluconeogenetic enzyme, is required for efficient accumulation of Bamboo mosaic virus. Nucleic Acids Res, 2007, 35: 424-432

[125]

Lin S, Dewey RE, Wang Ret al.. Discovery of a novel eIF4E1.S allele conferring PVY resistance in Chinese tobacco ( Nicotiana tabacum ) landraces. Plant Breed, 2021, 140: 693-702

[126]

Ling K-S, Harris KR, Meyer JDFet al.. Non-synonymous single nucleotide polymorphisms in the watermelon eIF4E gene are closely associated with resistance to Zucchini yellow mosaic virus. Theor Appl Genet, 2009, 120: 191-200

[127]

Liu Y, Wang M, Cheng Aet al.. The role of host eIF2α in viral infection. Virol J, 2020, 17 112

[128]

Liu Y, Xin X, Li Pet al.. Editing of eIF(iso)4E.c confers resistance against Turnip mosaic virus in Brassica rapa. Hortic Plant J, 2024, 10: 1020-1034

[129]

Liu Y, Wang S, Zhao D, Zhao C, Yu H, Zeng J, Tong Z, Yuan C, Li Z, Huang C (2025) Simultaneous knockout of multiple eukaryotic translation initiation factor 4E genes confers durable and broad-spectrum resistance to potyviruses in tobacco. aBIOTECH 6(2):232-248.. https://doi.org/10.1007/s42994-025-00216-5

[130]

Luan H, Shine MB, Cui Xet al.. The potyviral P3 protein targets eukaryotic elongation factor 1A to promote the unfolded protein response and viral pathogenesis. Plant Physiol, 2016, 172: 221-234

[131]

Lucioli A, Tavazza R, Baima S, Fatyol K, Burgyan J, Tavazza M (2022) CRISPR-Cas9 targeting of the eIF4E1 gene extends the potato virus Y resistance spectrum of the solanum tuberosum L. cv. Desirée. Front Microbiol 13. https://doi.org/10.3389/fmicb.2022.873930

[132]

Macovei A, Sevilla NR, Cantos Cet al.. Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus. Plant Biotechnol J, 2018, 16: 1918-1927

[133]

Mailliot J, Martin F (2018) Viral internal ribosomal entry sites: four classes for one goal. WIREs RNA 9. https://doi.org/10.1002/wrna.1458

[134]

Makarova KS, Koonin EV (2015) Annotation and classification of CRISPR-Cas systems. Methods Mol Biol 1311:47-75. https://doi.org/10.1007/978-1-4939-2687-9_4

[135]

Marandel G, Salava J, Abbott Aet al.. Quantitative trait loci meta-analysis of Plum pox virus resistance in apricot ( Prunus armeniaca L.): new insights on the organization and the identification of genomic resistance factors. Mol Plant Pathol, 2009, 10: 347-360

[136]

Mateyak MK, Kinzy TG. eEF1A: thinking outside the ribosome. J Biol Chem, 2010, 285: 21209-21213

[137]

Matsuda D, Dreher TW. The tRNA-like structure of Turnip yellow mosaic virus RNA is a 3′-translational enhancer. Virology, 2004, 321: 36-46

[138]

Matsuda D, Yoshinari S, Dreher TW. eEF1A binding to aminoacylated viral RNA represses minus strand synthesis by TYMV RNA-dependent RNA polymerase. Virology, 2004, 321: 47-56

[139]

May J, Johnson P, Saleem H, Simon AE (2017) A sequence-independent, unstructured internal ribosome entry site is responsible for internal expression of the coat protein of turnip crinkle virus. J Virol 91(8):e02421-e02416. https://doi.org/10.1128/JVI.02421-16

[140]

Mazier M, Flamain F, Nicolaï Met al.. Knock-down of both eIF4E1 and eIF4E2 genes confers broad-spectrum resistance against potyviruses in tomato. PLoS ONE, 2011, 6 e29595

[141]

McCallum CM, Comai L, Greene EA, Henikoff S. Targeting induced local lesions IN genomes (TILLING) for plant functional genomics. Plant Physiol, 2000, 123: 439-442

[142]

McCormack JC, Yuan X, Yingling YGet al.. Structural domains within the 3′ untranslated region of turnip crinkle virus. J Virol, 2008, 82: 8706-8720

[143]

Michon T, Estevez Y, Walter Jet al.. The potyviral virus genome-linked protein VPg forms a ternary complex with the eukaryotic initiation factors eIF4E and eIF4G and reduces eIF4E affinity for a mRNA cap analogue. FEBS J, 2006, 273: 1312-1322

[144]

Miras M, Miller WA, Truniger V, Aranda MA (2017a) Non-canonical translation in plant RNA viruses. Front Plant Sci 8:494. https://doi.org/10.3389/fpls.2017.00494

[145]

Miras M, Sempere RN, Kraft JJet al.. Interfamilial recombination between viruses led to acquisition of a novel translation-enhancing RNA element that allows resistance breaking. New Phytol, 2014, 202: 233-246

[146]

Miras M, Truniger V, Querol-Audi J, Aranda MA. Analysis of the interacting partners eIF4F and 3′-CITE required for melon necrotic spot virus cap-independent translation. Mol Plant Pathol, 2017, 18: 635-648

[147]

Miras M, Aranda MA, Truniger V. Different RNA elements control viral protein synthesis in polerovirus isolates evolved in separate geographical regions. Int J Mol Sci, 2022, 23: 12503

[148]

Miroshnichenko D, Timerbaev V, Okuneva Aet al.. Enhancement of resistance to PVY in intragenic marker-free potato plants by RNAi-mediated silencing of eIF4E translation initiation factors. Plant Cell Tissue Organ Cult, 2020, 140: 691-705

[149]

Mourenets L, Pushin A, Timerbaev Vet al.. Effect of gene silencing of translation initiation factors eIF(iso)4G and eIF(iso)4E on sour Cherry rootstock resistance to Sharka disease. Int J Mol Sci, 2022, 24 360

[150]

Moury B, Charron C, Janzac Bet al.. Evolution of plant eukaryotic initiation factor 4E (eIF4E) and potyvirus genome-linked protein (VPg): a game of mirrors impacting resistance spectrum and durability. Infect Genet Evol, 2014, 27: 472-480

[151]

Moury B, Lebaron C, Szadkowski Met al.. Knock-out mutation of eukaryotic initiation factor 4E2 (eIF4E2) confers resistance to pepper veinal mottle virus in tomato. Virology, 2020, 539: 11-17

[152]

Naderpour M, Lund OS, Larsen R, Johansen E. Potyviral resistance derived from cultivars of Phaseolus vulgaris carrying bc-3 is associated with the homozygotic presence of a mutated eIF4E allele. Mol Plant Pathol, 2010, 11: 255-263

[153]

Neeleman L, Linthorst HJM, Bol JF. Efficient translation of alfamovirus RNAs requires the binding of coat protein dimers to the 3′ termini of the viral RNAs. J Gen Virol, 2004, 85: 231-240

[154]

Negrutskii BS, El’skaya AV (1998) Eukaryotic translation elongation factor 1α: structure, expression, functions, and possible role in aminoacyl-tRNA channeling. Prog Nucleic Acid Res Mol Biol 60:47-78. https://doi.org/10.1016/s0079-6603(08)60889-2

[155]

Nellist CF, Qian W, Jenner CEet al.. Multiple copies of eukaryotic translation initiation factors in Brassica rapa facilitate redundancy, enabling diversification through variation in splicing and broad-spectrum virus resistance. Plant J, 2014, 77: 261-268

[156]

Nicaise V, German-Retana S, Sanjuán Ret al.. The eukaryotic translation initiation factor 4E controls lettuce susceptibility to the potyvirus lettuce mosaic virus. Plant Physiol, 2003, 132: 1272-1282

[157]

Nicaise V, Gallois J-L, Chafiai Fet al.. Coordinated and selective recruitment of eIF4E and eIF4G factors for potyvirus infection in Arabidopsis thaliana. FEBS Lett, 2007, 581: 1041-1046

[158]

Nicholson BL, Wu B, Chevtchenko I, White KA. Tombusvirus recruitment of host translational machinery via the 3′ UTR. RNA, 2010, 16: 1402-1419

[159]

Nicholson BL, Zaslaver O, Mayberry LKet al.. Tombusvirus Y-shaped translational enhancer forms a complex with eIF4F and can be functionally replaced by heterologous translational enhancers. J Virol, 2013, 87: 1872-1883

[160]

Nieto C, Morales M, Orjeda Get al.. An eIF4E allele confers resistance to an uncapped and non-polyadenylated RNA virus in melon. Plant J, 2006, 48: 452-462

[161]

Nieto C, Piron F, Dalmais Met al.. Ecotilling for the identification of allelic variants of melon eIF4E, a factor that controls virus susceptibility. BMC Plant Biol, 2007, 7 34

[162]

Nishikiori M, Dohi K, Mori Met al.. Membrane-bound Tomato mosaic virus replication proteins participate in RNA synthesis and are associated with host proteins in a pattern distinct from those that are not membrane bound. J Virol, 2006, 80: 8459-8468

[163]

Noueiry AO, Chen J, Ahlquist P. A mutant allele of essential, general translation initiation factor DED1 selectively inhibits translation of a viral mRNA. Proc Natl Acad Sci, 2000, 97: 12985-12990

[164]

Noureen A, Khan MZ, Amin I, Zainab T, Mansoor S (2022) CRISPR/Cas9-mediated targeting of susceptibility factor eIF4E-enhanced resistance against potato virus Y. Front Genet 13:922019. https://doi.org/10.3389/fgene.2022.922019

[165]

Nyborg J, Liljas A. Protein biosynthesis: structural studies of the elongation cycle. FEBS Lett, 1998, 430: 95-99

[166]

Oh Y, Kim H, Kim SG. Virus-induced plant genome editing. Curr Opin Plant Biol, 2021, 60 101992

[167]

Olsthoorn RCL. A conformational switch at the 3’ end of a plant virus RNA regulates viral replication. EMBO J, 1999, 18: 4856-4864

[168]

Osman TA, Buck KW. The tobacco mosaic virus RNA polymerase complex contains a plant protein related to the RNA-binding subunit of yeast eIF-3. J Virol, 1997, 71: 6075-6082

[169]

Parsyan A, Svitkin Y, Shahbazian Det al.. mRNA helicases: the tacticians of translational control. Nat Rev Mol Cell Biol, 2011, 12: 235-245

[170]

Pavan S, Jacobsen E, Visser RGF, Bai Y. Loss of susceptibility as a novel breeding strategy for durable and broad-spectrum resistance. Mol Breed, 2010, 25: 1-12

[171]

Pechar GS, Donaire L, Gosalvez Bet al.. Editing melon eIF4E associates with virus resistance and male sterility. Plant Biotechnol J, 2022, 20: 2006-2022

[172]

Perovic D, Krämer I, Habekuss Aet al.. Genetic analyses of BaMMV/BaYMV resistance in barley accession HOR4224 result in the identification of an allele of the translation initiation factor 4e (Hv-eIF4E) exclusively effective against Barley mild mosaic virus (BaMMV). Theor Appl Genet, 2014, 127: 1061-1071

[173]

Pestova TV, Kolupaeva VG. The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection. Genes Dev, 2002, 16: 2906-2922

[174]

Piron F, Nicolaï M, Minoïa Set al.. An induced mutation in tomato eIF4E leads to immunity to two potyviruses. PLoS ONE, 2010, 5 e11313

[175]

Pooggin MM, Ryabova LA (2018) Ribosome shunting, polycistronic translation, and evasion of antiviral defenses in plant pararetroviruses and beyond. Front Microbiol 9:644. https://doi.org/10.3389/fmicb.2018.00644

[176]

Powell P, Bhardwaj U, Goss D. Eukaryotic initiation factor 4F promotes a reorientation of eukaryotic initiation factor 3 binding on the 5′ and the 3′ UTRs of barley yellow dwarf virus mRNA. Nucleic Acids Res, 2022, 50: 4988-4999

[177]

Pyott DE, Sheehan E, Molnar A. Engineering of CRISPR/Cas9-mediated potyvirus resistance in transgene-free Arabidopsis plants. Mol Plant Pathol, 2016, 17: 1276-1288

[178]

Qian W, Zhang S, Zhang Set al.. Mapping and candidate-gene screening of the novel Turnip mosaic virus resistance gene retr02 in Chinese cabbage ( Brassica rapa L.). Theor Appl Genet, 2013, 126: 179-188

[179]

Quadt R, Kao CC, Browning KSet al.. Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase. Proc Natl Acad Sci U S A, 1993, 90: 1498-1502

[180]

Rao AL, Dreher TW, Marsh LE, Hall TC. Telomeric function of the tRNA-like structure of brome mosaic virus RNA. Proc Natl Acad Sci, 1989, 86: 5335-5339

[181]

Rees DC, Johnson E, Lewinson O. ABC transporters: the power to change. Nat Rev Mol Cell Biol, 2009, 10: 218-227

[182]

Reinbold C, Lacombe S, Ziegler-Graff Vet al.. Closely related poleroviruses depend on distinct translation initiation factors to infect Arabidopsis thaliana. Mol Plant-Microbe Interact, 2013, 26: 257-265

[183]

Reusken CBEM, Bol JF. Structural elements of the 3’-terminal coat protein binding site in Alfalfa mosaic virus RNAs. Nucleic Acids Res, 1996, 24: 2660-2665

[184]

Rigola D, van Oeveren J, Janssen Aet al.. High-throughput detection of induced mutations and natural variation using keypoint™ technology. PLoS ONE, 2009, 4 e4761

[185]

Robaglia C, Caranta C. Translation initiation factors: a weak link in plant RNA virus infection. Trends Plant Sci, 2006, 11: 40-45

[186]

Roberts R, Mayberry LK, Browning KS, Rakotondrafara AM. The Triticum mosaic virus 5’ leader binds to both eIF4G and eIFiso4G for translation. PLoS ONE, 2017, 12 e0169602

[187]

Rodríguez-Gómez G, Vargas-Mejía P, Silva-Rosales L. Differential expression of genes between a tolerant and a susceptible maize line in response to a Sugarcane mosaic virus infection. Viruses, 2022, 14: 1803

[188]

Rodríguez-Hernández AM, Gosalvez B, Sempere RNet al.. Melon RNA interference (RNAi) lines silenced for Cm-eIF4E show broad virus resistance. Mol Plant Pathol, 2012, 13: 755-763

[189]

Rogers GW, Komar AA, Merrick WC (2002) eIF4A: The godfather of the DEAD box helicases. Prog Nucleic Acid Res Mol Biol 72:307-331. https://doi.org/10.1016/s0079-6603(02)72073-4

[190]

Rollwage L, Van Houtte H, Hossain Ret al.. Recessive resistance against beet chlorosis virus is conferred by the eukaryotic translation initiation factor (iso) 4E in Beta vulgaris. Plant Biotechnol J, 2024, 22: 2129-2141

[191]

Roudet-Tavert G, Michon T, Walter Jet al.. Central domain of a potyvirus VPg is involved in the interaction with the host translation initiation factor eIF4E and the viral protein HcPro. J Gen Virol, 2007, 88: 1029-1033

[192]

Rubio M, Nicolaï M, Caranta C, Palloix A. Allele mining in the pepper gene pool provided new complementation effects between pvr2-eIF4E and pvr6-eIF(iso)4E alleles for resistance to pepper veinal mottle virus. J Gen Virol, 2009, 90: 2808-2814

[193]

Rubio B, Cosson P, Caballero Met al.. Genome-wide association study reveals new loci involved in Arabidopsis thaliana and Turnip mosaic virus (Tu MV ) interactions in the field. New Phytol, 2019, 221: 2026-2038

[194]

Rubio J, Sánchez E, Tricon Det al.. Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum ( Prunus salicina ) impacts susceptibility to Plum pox virus (PPV) and small RNA production. BMC Plant Biol, 2019, 19: 440

[195]

Ruffel S, Dussault M, Palloix Aet al.. A natural recessive resistance gene against potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E (eIF4E). Plant J, 2002, 32: 1067-1075

[196]

Ruffel S, Gallois JL, Lesage ML, Caranta C. The recessive potyvirus resistance gene pot-1 is the tomato orthologue of the pepper pvr2-eIF4E gene. Mol Genet Genomics, 2005, 274: 346-353

[197]

Ruffel S, Gallois JL, Moury Bet al.. Simultaneous mutations in translation initiation factors eIF4E and eIF(iso)4E are required to prevent pepper veinal mottle virus infection of pepper. J Gen Virol, 2006, 87: 2089-2098

[198]

Rupp JS, Cruz L, Trick HN, Fellers JP. RNAi-mediated silencing of endogenous wheat genes EIF(Iso)4E–2 and EIF4G induce resistance to multiple RNA viruses in transgenic wheat. Crop Sci, 2019, 59: 2642-2651

[199]

Rusholme RL, Higgins EE, Walsh JA, Lydiate DJ. Genetic control of broad-spectrum resistance to turnip mosaic virus in Brassica rapa (Chinese cabbage). J Gen Virol, 2007, 88: 3177-3186

[200]

Saha S, Mäkinen K. Insights into the functions of eIF4E-binding motif of VPg in Potato Virus A infection. Viruses, 2020, 12: 197

[201]

Samarskaya V, Spechenkova N, Kalinina NOet al.. The emerging role of omics-based approaches in plant virology. Viruses, 2025, 17: 986

[202]

Sanfaçon H. Plant translation factors and virus resistance. Viruses, 2015, 7: 3392-3419

[203]

Sasvari Z, Izotova L, Kinzy TG, Nagy PD. Synergistic roles of eukaryotic translation elongation factors 1Bγ and 1A in stimulation of tombusvirus minus-strand synthesis. PLoS Pathog, 2011, 7 e1002438

[204]

Sato M, Nakahara K, Yoshii Met al.. Selective involvement of members of the eukaryotic initiation factor 4E family in the infection of Arabidopsis thaliana by potyviruses. FEBS Lett, 2005, 579: 1167-1171

[205]

Sha T, Li Z, Xu Set al.. eIF2Bβ confers resistance to Turnip mosaic virus by recruiting ALKBH9B to modify viral RNA methylation. Plant Biotechnol J, 2024, 22: 3205-3217

[206]

Shan H, Chen D, Zhang Ret al.. Relationship between sugarcane eIF4E gene and resistance against sugarcane streak mosaic virus. Plants, 2023, 12: 2805

[207]

Sharma SD, Kraft JJ, Miller WA, Goss DJ (2015) Recruitment of the 40S ribosome subunit to the 3'-untranslated region (UTR) of a viral mRNA, via the eIF4 complex, facilitates cap-independent translation. J Biol Chem 290(18):11268–11281. https://doi.org/10.1074/jbc.M115.645002

[208]

Shen R, Miller WA. The 3′ untranslated region of tobacco necrosis virus RNA contains a barley yellow dwarf virus-like cap-independent translation element. J Virol, 2004, 78: 4655-4664

[209]

Shi L, Jiang C, He Qet al.. Bulked segregant RNA-sequencing (BSR-seq) identified a novel rare allele of eIF4E effective against multiple isolates of BaYMV/BaMMV. Theor Appl Genet, 2019, 132: 1777-1788

[210]

Shopan J, Mou H, Zhang Let al.. Eukaryotic translation initiation factor 2B-beta (eIF 2B β), a new class of plant virus resistance gene. Plant J, 2017, 90: 929-940

[211]

Simon AE, Miller WA. 3′ cap-independent translation enhancers of plant viruses. Annu Rev Microbiol, 2013, 67: 21-42

[212]

Song A, Lou W, Jiang Jet al.. An isoform of eukaryotic initiation factor 4E from Chrysanthemum morifolium interacts with Chrysanthemum Virus B coat protein. PLoS ONE, 2013, 8 e57229

[213]

Songbai Z, Zhenguo D, Liang Yet al.. Identification and characterization of the interaction between viroplasm-associated proteins from two different plant-infecting reoviruses and eEF-1A of rice. Arch Virol, 2013, 158: 2031-2039

[214]

Sorokin II, Vassilenko KS, Terenin IMet al.. Non-canonical translation initiation mechanisms employed by eukaryotic viral mRNAs. Biochem Mosc, 2021, 86: 1060-1094

[215]

Stein N, Perovic D, Kumlehn Jet al.. The eukaryotic translation initiation factor 4E confers multiallelic recessive Bymovirus resistance in Hordeum vulgare (L.). Plant J, 2005, 42: 912-922

[216]

Stupina VA, Meskauskas A, McCormack JCet al.. The 3′ proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. RNA, 2008, 14: 2379-2393

[217]

Sun D, Ji X, Jia Yet al.. LreEF1A4, a translation elongation factor from Lilium regale , is pivotal for Cucumber mosaic virus and Tobacco rattle virus infections and tolerance to salt and drought. Int J Mol Sci, 2020, 21 2083

[218]

Szurman-Zubrzycka M, Kurowska M, Till BJ, Szarejko I (2023) Is it the end of TILLING era in plant science? Front Plant Sci 14:1160695. https://doi.org/10.3389/fpls.2023.1160695

[219]

Takakura Y, Udagawa H, Shinjo A, Koga K. Mutation of a Nicotiana tabacum L. eukaryotic translation-initiation factor gene reduces susceptibility to a resistance-breaking strain of Potato virus Y. Mol Plant Pathol, 2018, 19: 2124-2133

[220]

Taroncher-Oldenburg G, Müller C, Obermann Wet al.. Targeting the DEAD-box RNA helicase eIF4A with rocaglates—a pan-antiviral strategy for minimizing the impact of future RNA virus pandemics. Microorganisms, 2021, 9 540

[221]

Tatineni S, Hein GL. Plant viruses of agricultural importance: current and future perspectives of virus disease management strategies. Phytopathology®, 2023, 113: 117-141

[222]

Tavert-Roudet G, Anne A, Barra Aet al.. The potyvirus particle recruits the plant translation initiation factor eIF4E by means of the VPg covalently linked to the viral RNA. Mol Plant-Microbe Interact, 2017, 30: 754-762

[223]

Thiébeauld O, Schepetilnikov M, Park H-Set al.. A new plant protein interacts with eIF3 and 60S to enhance virus-activated translation re-initiation. EMBO J, 2009, 28: 3171-3184

[224]

Thivierge K, Cotton S, Dufresne PJet al.. Eukaryotic elongation factor 1A interacts with Turnip mosaic virus RNA-dependent RNA polymerase and VPg-Pro in virus-induced vesicles. Virology, 2008, 377: 216-225

[225]

Treder K, Pettit Kneller EL, Allen EMet al.. The 3′ cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation. RNA, 2008, 14: 134-147

[226]

Tricon D, Faivre d’Arcier J, Eyquard J-Pet al.. Allele mining of eukaryotic translation initiation factor genes in Prunus for the identification of new sources of resistance to sharka. Sci Rep, 2023, 13: 15247

[227]

Truniger V, Aranda MA (2009) Recessive resistance to plant viruses. Adv Virus Res 75:119-159. https://doi.org/10.1016/s0065-3527(09)07504-6

[228]

Truniger V, Nieto C, González-Ibeas D, Aranda M. Mechanism of plant eIF4E-mediated resistance against a Carmovirus (Tombusviridae): cap-independent translation of a viral RNA controlled in cis by an (a)virulence determinant. Plant J, 2008, 56: 716-727

[229]

Truniger V, Pechar GS, Aranda MA. Advances in understanding the mechanism of cap-independent cucurbit aphid-borne yellows virus protein synthesis. Int J Mol Sci, 2023, 24 17598

[230]

Udagawa H, Koga K, Shinjo Aet al.. Loss-of-function of Nicotiana tabacum L. eukaryotic translation initiation factors eIF4E1-S and eIF(iso)4E-T synergistically confers high-level resistance to both Potato virus Y (PVY) and resistance-breaking PVY. Breed Sci, 2021, 71: 193-200

[231]

Viswanath Kasi K, Hamid A, Ateka E, Pappu HR (2023) CRISPR/Cas, multiomics, and RNA interference in virus disease management. Phytopathology 113:1661–1676. https://doi.org/10.1094/PHYTO-01-23-0002-V

[232]

Volpon L, Osborne MJ, Topisirovic Iet al.. Cap-free structure of eIF4E suggests a basis for conformational regulation by its ligands. EMBO J, 2006, 25: 5138-5149

[233]

Wang A, Krishnaswamy S. Eukaryotic translation initiation factor 4E-mediated recessive resistance to plant viruses and its utility in crop improvement. Mol Plant Pathol, 2012, 13: 795-803

[234]

Wang Z, Treder K, Miller WA. Structure of a viral cap-independent translation element that functions via high affinity binding to the eIF4E subunit of eIF4F. J Biol Chem, 2009, 284: 14189-14202

[235]

Wang Z, Kraft JJ, Hui AY, Miller WA. Structural plasticity of barley yellow dwarf virus-like cap-independent translation elements in four genera of plant viral RNAs. Virology, 2010, 402: 177-186

[236]

Wang Z, Parisien M, Scheets K, Miller WA. The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element. Structure, 2011, 19: 868-880

[237]

Wang X, Kohalmi SE, Svircev Aet al.. Silencing of the host factor eIF(iso)4E gene confers plum pox virus resistance in plum. PLoS ONE, 2013, 8 e50627

[238]

Wang W, Ma S, Hu Pet al.. Genome editing of rice eIF4G loci confers partial resistance to rice black-streaked dwarf virus. Viruses, 2021, 13 2100

[239]

Wazwaz ATH. Collapse of resistance to Tomato yellow leaf curl virus in tomato upon silencing the elongation factor 1-alpha gene, 2013, Bethlehem, Palestine, Bethlehem University

[240]

Wek RC. Role of eIF2α kinases in translational control and adaptation to cellular stress. Cold Spring Harb Perspect Biol, 2018, 10 a032870

[241]

Wen Z, Lu F, Jung Met al.. Edited eukaryotic translation initiation factors confer resistance against maize lethal necrosis. Plant Biotechnol J, 2024, 22: 3523-3535

[242]

Wittmann S, Chatel H, Fortin MG, Laliberté J-F. Interaction of the viral protein genome linked of Turnip mosaic potyvirus with the translational eukaryotic initiation factor (iso) 4E ofArabidopsis thaliana using the yeast two-hybrid system. Virology, 1997, 234: 84-92

[243]

Wittwer CT, Reed GH, Gundry CNet al.. High-resolution genotyping by amplicon melting analysis using LCGreen. Clin Chem, 2003, 49: 853-860

[244]

Xu M, Xie H, Wu J, Humbert S, Marshall L, Hastings C, Wu E, Jones T, Pacheco M, Martinez I, Suresh LM, Beyene Y, Boddupalli P, Pixley K, Dhugga KS (2017) Translation initiation factor eIF4E and eIFiso4E are both required for peanut stripe virus infection in peanut (Arachis hypogaea L.). Front Microbiol 8:338. https://doi.org/10.3389/fmicb.2017.00338

[245]

Yamaji Y, Kobayashi T, Hamada Ket al.. In vivo interaction between Tobacco mosaic virus RNA-dependent RNA polymerase and host translation elongation factor 1A. Virology, 2006, 347: 100-108

[246]

Yambao MLM, Masuta C, Nakahara K, Uyeda I. The central and C-terminal domains of VPg of Clover yellow vein virus are important for VPg–HCPro and VPg–VPg interactions. J Gen Virol, 2003, 84: 2861-2869

[247]

Yoon YJ, Venkatesh J, Lee JH, Kim J, Lee HE, Kim DS, Kang BC (2020) Genome editing of eIF4E1 in tomato confers resistance to pepper mottle virus. Front Plant Sci 11:1098. https://doi.org/10.3389/fpls.2020.01098

[248]

Yoshii M, Nishikiori M, Tomita Ket al.. The Arabidopsis cucumovirus multiplication 1 and 2 loci encode translation initiation factors 4E and 4G. J Virol, 2004, 78: 6102-6111

[249]

Zeenko VV, Ryabova LA, Spirin ASet al.. Eukaryotic elongation factor 1A interacts with the upstream pseudoknot domain in the 3′ untranslated region of tobacco mosaic virus RNA. J Virol, 2002, 76: 5678-5691

[250]

Zhan X, Zhang F, Li Net al.. CRISPR/Cas: an emerging toolbox for engineering virus resistance in plants. Plants, 2024, 13: 3313

[251]

Zhang J, Roberts R, Rakotondrafara AM. The role of the 5′ untranslated regions of Potyviridae in translation. Virus Res, 2015, 206: 74-81

[252]

Zhang X, Yin Y, Su Yet al.. eIF4A, a target of siRNA derived from rice stripe virus, negatively regulates antiviral autophagy by interacting with ATG5 in Nicotiana benthamiana. PLoS Pathog, 2021, 17 e1009963

[253]

Zhao P, Liu Q, Miller WA, Goss DJ. Eukaryotic translation initiation factor 4G (eIF4G) coordinates interactions with eIF4A, eIF4B, and eIF4E in binding and translation of the barley yellow dwarf virus 3′ cap-independent translation element (BTE). J Biol Chem, 2017, 292: 5921-5931

[254]

Zhao L, Li W, Wang Bet al.. Development of a PVY resistant flue-cured tobacco line via EMS mutagenesis of eIF4E. Agronomy, 2019, 10: 36

[255]

Zhou L, Tian Y, Ren L, Yan ZY, Jiang J, Shi QH, Geng C, Li XD (2024a) A natural substitution of a conserved amino acid in eIF4E confers resistance against multiple potyviruses. Mol Plant Pathol 25(1):e13418. https://doi.org/10.1111/mpp.1341

[256]

Zhou L, Yin X, Yan Z, Jiang J, Tian YP, Gao R, Geng C, Li XD (2024b) The naturally occurring amino acid substitution in the VPg α1–α2 loop breaks eIF4E-mediated resistance to PRSV by enabling VPg to re-hijack another eIF4E Isoform eIF(iso)4E in watermelon. Mol Plant Pathol 25(11):e70033. https://doi.org/10.1111/mpp.70033

[257]

Zlobin N, Taranov V (2023) Plant eIF4E isoforms as factors of susceptibility and resistance to potyviruses. Front Plant Sci 14:1041868. https://doi.org/10.3389/fpls.2023.1041868

[258]

Zuo X, Wang J, Yu Pet al.. Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3 ′ UTR of turnip crinkle virus. Proc Natl Acad Sci U S A, 2010, 107: 1385-1390

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