Discrete spread model for COVID-19: the case of Lebanon

Ayman Mourad, Fatima Mroue

PDF(4917 KB)
PDF(4917 KB)
Quant. Biol. ›› 2022, Vol. 10 ›› Issue (2) : 157-171. DOI: 10.15302/J-QB-022-0292
RESEARCH ARTICLE
RESEARCH ARTICLE

Discrete spread model for COVID-19: the case of Lebanon

Author information +
History +

Abstract

Background: Mathematical models are essential to predict the likely outcome of an epidemic. Various models have been proposed in the literature for disease spreads. Some are individual based models and others are compartmental models. In this study, discrete mathematical models are developed for the spread of the coronavirus disease 2019 (COVID-19).

Methods: The proposed models take into account the known special characteristics of this disease such as the latency and incubation periods, and the different social and infectiousness conditions of infected people. In particular, they include a novel approach that considers the social structure, the fraction of detected cases over the real total infected cases, the influx of undetected infected people from outside the borders, as well as contact-tracing and quarantine period for travelers. The first model is a simplified model and the second is a complete model.

Results: From a numerical point of view, the particular case of Lebanon has been studied and its reported data have been used to estimate the complete discrete model parameters using optimization techniques. Moreover, a parameter analysis and several prediction scenarios are presented in order to better understand the role of the parameters.

Conclusions: Understanding the role of the parameters involved in the models help policy makers in deciding the appropriate mitigation measures. Also, the proposed approach paves the way for models that take into account societal factors and complex human behavior without an extensive process of data collection.

Author summary

Mathematical models use mathematical concepts to describe systems. In epidemiology, models try for instance to predict the evolution of the number of infected in the population or the duration of an epidemic. Such models can show how different public health interventions may affect the outcome of the epidemic. A class of existing models consists of ordinary differential equations that are based on the assumption of homogeneous mixing of the population. To be more realistic, we propose herein two discrete models that take into account heterogeneities in the population such as the social activity level of individuals.

Graphical abstract

Keywords

discrete stochastic modeling / COVID-19 / numerical simulation

Cite this article

Download citation ▾
Ayman Mourad, Fatima Mroue. Discrete spread model for COVID-19: the case of Lebanon. Quant. Biol., 2022, 10(2): 157‒171 https://doi.org/10.15302/J-QB-022-0292

References

[1]
WorldHealth Organization. Statement on the second meeting of the international health regulations. Emergency committee regarding the outbreak of novel coronavirus (2019-ncov). https://www.who.int/news-room/detail/30-01-2020-statement-onthe-second-meeting-of-the-international-health-regulations. Accessed: December 1, 2020
[2]
WorldHealth Organization. Director-general’s opening remarks at the media briefing on covid-19—11 march 2020. https://www.who.int/dg/speeches/detail/. Accessed: December 1, 2020
[3]
BonabeauE.. ( 2002) Agent-based modeling: Methods and techniques for simulating human systems. In: Proceedings of the National Academy of Sciences, 99(suppl 3), 7280‒ 7287
[4]
Ajelli,M., alves,B., Balcan,D., Colizza,V., Hu,H., Ramasco,J. J., Merler,S. ( 2010). Comparing large-scale computational approaches to epidemic modeling: agent-based versus structured metapopulation models. BMC Infect. Dis., 10 : 190
CrossRef Google scholar
[5]
Hethcote,H. ( 2000). The mathematics of infectious diseases. SIAM Review, 42 : 599– 653
[6]
DiekmannO., HeesterbeekH.. ( 2012) Mathematical Tools for Understanding Infectious Disease Dynamics, volume 7. Princeton University Press
[7]
BrauerF.. ( 2012) Mathematical Models in Population Biology and Epidemiology, volume 2. Springer
[8]
KermackW. O. McKendrickA.. ( 1927) A contribution to the mathematical theory of epidemics. In: Proceedings of the royal society of london. Series A, Containing papers of a mathematical and physical character, 115, 700‒ 721
[9]
sellI., ( 1996) The quasi-stationary distribution of the closed endemic sis model. Adv. Appl. Probab., 895‒ 932
[10]
Hurley,M., Jacobs,G. ( 2006). The basic SI model. In: New Directions for Teaching and Learning, 2006 : 11– 22
[11]
JinY. WangW.. ( 2007) An sirs model with a nonlinear incidence rate. Chaos, Solitons, Fract., 34, 1482‒ 1497
[12]
Epstein,J. ( 2009). Modelling to contain pandemics. Nature, 460 : 687– 687
[13]
Hunter,E., Namee,B. M. ( 2017). A taxonomy for agent-based models in human infectious disease epidemiology. J. Artif. Soc. Social Simul., 20 : 2
[14]
Hunter,E., Mac Namee,B. ( 2018). An open-data-driven agent-based model to simulate infectious disease outbreaks. PLoS One, 13 : e0208775
CrossRef Google scholar
[15]
Tracy,M., Cerda,M. Keyes,K. ( 2018). Agent-based modeling in public health: current applications and future directions. Annu. Rev. Publ. Health, 39 : 77– 94
[16]
De KaiG. MorgunovA., NangaliaV.. ( 2020) Universal masking is urgent in the COVID-19 pandemic: Seir and agent based models, empirical validation, policy recommendations. arXiv, 2004.13553
[17]
Epstein,J. M., Goedecke,D. M., Yu,F., Morris,R. J., Wagener,D. K. Bobashev,G. ( 2007). Controlling pandemic flu: the value of international air travel restrictions. PLoS One, 2 : e401
[18]
Anastassopoulou,C., Russo,L., Tsakris,A. ( 2020). Data-based analysis, modelling and forecasting of the COVID-19 outbreak. PLoS One, 15 : e0230405
CrossRef Google scholar
[19]
CasellaF.. ( 2020) Can the COVID-19 epidemic be managed on the basis of daily data? arXiv, 2003.06967
[20]
Wu,J. T., Leung,K., Bushman,M., Kishore,N., Niehus,R., de Salazar,P. M., Cowling,B. J., Lipsitch,M. Leung,G. ( 2020). Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China. Nat. Med, 26 : 506– 510
CrossRef Google scholar
[21]
Giordano,G., Blanchini,F., Bruno,R., Colaneri,P., Di Filippo,A., Di Matteo,A. ( 2020). Modelling the COVID-19 epidemic and implementation of population-wide interventions in Italy. Nat. Med, 26 : 855– 860
CrossRef Google scholar
[22]
SameniR.. ( 2020) Mathematical modeling of epidemic diseases; a case study of the COVID-19 coronavirus. arXiv, 2003.11371
[23]
Goel,R. ( 2020). Mobility based SIR model for pandemics−with case study of COVID-19. In: 2020 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM), pp. 110– 117
[24]
Hellewell,J., Abbott,S., Gimma,A., Bosse,N. I., Jarvis,C. I., Russell,T. W., Munday,J. D., Kucharski,A. J., Edmunds,W. J., Funk,S. . ( 2020). Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. Lancet Glob. Health, 8 : e488– e496
CrossRef Google scholar
[25]
Kucharski,A. J., Russell,T. W., Diamond,C., Liu,Y., Edmunds,J., Funk,S., Eggo,R. M., Sun,F., Jit,M., Munday,J. D. . ( 2020). Early dynamics of transmission and control of COVID-19: a mathematical modelling study. Lancet Infect. Dis., 20 : 553– 558
CrossRef Google scholar
[26]
Chang,S. Harding,N., Zachreson,C., Cliff,O. ( 2020). Modelling transmission and control of the COVID-19 pandemic in Australia. Nat. Commun., 11 : 5710
CrossRef Google scholar
[27]
Varotsos,C. Krapivin,V. ( 2020). A new model for the spread of COVID-19 and the improvement of safety. Saf. Sci., 132 : 104962
CrossRef Google scholar
[28]
Comunian,A., Gaburro,R. ( 2020). Inversion of a SIR-based model: A critical analysis about the application to COVID-19 epidemic. Physica D, 413 : 132674
CrossRef Google scholar
[29]
Calafiore,G. C., Novara,C. ( 2020). A modified SIR model for the COVID-19 contagion in Italy. In: 2020 59th IEEE Conference on Decision and Control (CDC), pp. 3889– 3894
[30]
Calvetti,D., Hoover,A., Rose,J. ( 2020). Bayesian dynamical estimation of the parameters of an SE(A)IR COVID-19 spread model. arXiv, 2005.04365
[31]
Rouabah,M. T., Tounsi,A. Belaloui,N. ( 2020). Early dynamics of COVID-19 in Algeria: a model-based study. ArXiv, 2005.13516
[32]
Pastor-Satorras,R. ( 2001). Epidemic spreading in scale-free networks. Phys. Rev. Lett., 86 : 3200– 3203
CrossRef Google scholar
[33]
Boulmezaoud,T. ( 2020). A discrete epidemic model and a zigzag strategy for curbing the COVID-19 outbreak and for lifting the lockdown. Math. Model. Nat. Phenom., 15 : 75
[34]
He,S., Tang,S. ( 2020). A discrete stochastic model of the COVID-19 outbreak: Forecast and control. Math. Biosci. Eng, 17 : 2792– 2804
[35]
Klinkenberg,D., Fraser,C. ( 2006). The effectiveness of contact tracing in emerging epidemics. PLoS One, 1 : e12
CrossRef Google scholar
[36]
Li,Q., Guan,X., Wu,P., Wang,X., Zhou,L., Tong,Y., Ren,R., Leung,K. S. M., Lau,E. H. Y., Wong,J. Y. . ( 2020). Early transmission dynamics in Wuhan, China, of novel coronavirus-infected pneumonia. N. Engl. J. Med., 382 : 1199– 1207
CrossRef Google scholar
[37]
Linton,N. M., Kobayashi,T., Yang,Y., Hayashi,K., Akhmetzhanov,A. R., Jung,S. M., Yuan,B., Kinoshita,R. ( 2020). Incubation period and other epidemiological characteristics of 2019 novel coronavirus infections with right truncation: A statistical analysis of publicly available case data. J. Clin. Med., 9 : 538
CrossRef Google scholar
[38]
Lavezzo,E., Franchin,E., Ciavarella,C., Cuomo-Dannenburg,G., Barzon,L., Del Vecchio,C., Rossi,L., Manganelli,R., Loregian,A., Navarin,N. . ( 2020). Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’. Nature, 584 : 425– 429
[39]
Nishiura,H., Natalie,M. Akhmetzhanov,A. ( 2020). Serial interval of novel coronavirus (COVID-19) infections. Int. J. Infect. Dis. 93, 284– 286
[40]
Du,Z., Xu,X., Wu,Y., Wang,L., Cowling,B. J. Meyers,L. ( 2020). Serial interval of COVID-19 among publicly reported confirmed cases. Emerg. Infect. Dis., 26 : 1341– 1343
CrossRef Google scholar
[41]
LongD. GombarS., HoganC. GreningerA. OReillyS. V., Bryson-CahnC., StevensB., RustagiA., JeromeK. KongC.. ( 2020) Occurrence and timing of subsequent SARS-CoV-2 RT-PCR positivity among initially negative patients. medRxiv, 20089151
[42]
Arevalo-Rodriguez,I., Buitrago-Garcia,D., Simancas-Racines,D., Zambrano-Achig,P., Del Campo,R., Ciapponi,A., Sued,O., Rutjes,A. W., Low,N. . ( 2020). False-negative results of initial RT-PCR assays for COVID-19: A systematic review. PLoS One, 15 : e0242958
CrossRef Google scholar
[43]
Kucirka,L. Lauer,S. Laeyendecker,O., Boon,D., ( 2020). Variation in false-negative rate of reverse transcriptase polymerase chain reaction-based SARS-CoV-2 tests by time since exposure. Ann. Intern. Med, 173 : 262– 267
[44]
Yang,Y., Yang,M., Shen,C., Wang,F., Yuan,J., Li,J., Zhang,M., Wang,Z., Xing,L., Wei,J. . ( 2020). Laboratory diagnosis and monitoring the viral shedding of 2019-ncov infections. Innovation (N Y), 1 : 100061
CrossRef Google scholar
[45]
Pan,Y., Long,L., Zhang,D., Yuan,T., Cui,S., Yang,P., Wang,Q. ( 2020). Potential false-negative nucleic acid testing results for severe acute respiratory syndrome coronavirus 2 from thermal inactivation of samples with low viral loads. Clin. Chem., 66 : 794– 801
CrossRef Google scholar
[46]
He,X., Lau,E. Wu,P., Deng,X., Wang,J., Hao,X., Lau,Y. Wong,J. Guan,Y., Tan,X. . ( 2020). Temporal dynamics in viral shedding and transmissibility of COVID-19. Nat. Med., 26 : 672– 675
[47]
Dugdale,C. Anahtar,M. Chiosi,J. Lazarus,J. McCluskey,S. Ciaranello,A. Gogakos,T., Little,B. Branda,J. Shenoy,E. . ( 2020). Clinical, laboratory, and radiologic characteristics of patients with initial false-negative severe acute respiratory syndrome coronavirus 2 nucleic acid amplification test results. Open Forum Infect Dis, 8 : ofaa559
[48]
Kinloch,N. Ritchie,G., Brumme,C. Dong,W., Dong,W., Lawson,T., Jones,R. Montaner,J. Leung,V., Romney,M. . ( 2020). Suboptimal biological sampling as a probable cause of false-negative COVID-19 diagnostic test results. J. Infect. Dis., 222 : 899– 902
[49]
Zhu,H., Li,Y., Jin,X., Huang,J., Liu,X., Qian,Y. ( 2021). Transmission dynamics and control methodology of COVID-19: a modeling study. Appl. Math. Model, 89 : 1983– 1998
[50]
Liu,Z., Magal,P., Seydi,O. ( 2020). A COVID-19 epidemic model with latency period. Infect. Dis. Model, 5 : 323– 337
[51]
Ministryof Public Health. https://corona.ministryinfo.gov.lb/. Accessed: December 1, 2020
[52]
NajiaHOUSSARI. Lebanon reinstates lockdown measures after virus rebound. Accessed: December 1, 2020
[53]
NaylaMadi Masri. The development and state of the art of adult learning and education (ale): National report of Lebanon. National Committee for Illiteracy and Adult Education, Ministry of Social Affairs, 2008. Accessed: December 1, 2020
[54]
NajwaYaacoub LaraBadre. Population & housing in Lebanon, 2012. Accessed: December 1, 2020

COMPLIANCE WITH ETHICS GUIDELINES

The authors Ayman Mourad and Fatima Mroue declare that they have no conflict of interest or financial conflicts to disclose. All procedures performed in studies involving animals were in accordance with the ethical standards of the institution or practice at which the studies were conducted, and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards.

OPEN ACCESS

This article is licensed by the CC By under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

RIGHTS & PERMISSIONS

2022 The Author(s). Published by Higher Education Press.
AI Summary AI Mindmap
PDF(4917 KB)

Accesses

Citations

Detail

Sections
Recommended

/