Law of genome evolution direction: Coding information quantity grows

Liao-fu LUO (罗辽复)

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Front. Phys. ›› 2009, Vol. 4 ›› Issue (2) : 241-251. DOI: 10.1007/s11467-009-0014-x
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Law of genome evolution direction: Coding information quantity grows

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Abstract

The problem of the directionality of genome evolution is studied. Based on the analysis of C-value paradox and the evolution of genome size, we propose that the function-coding information quantity of a genome always grows in the course of evolution through sequence duplication, expansion of code, and gene transfer from outside. The function-coding information quantity of a genome consists of two parts, p-coding information quantity that encodes functional protein and n-coding information quantity that encodes other functional elements. The evidences on the law of the evolutionary directionality are indicated. The needs of function are the motive force for the expansion of coding information quantity, and the information quantity expansion is the way to make functional innovation and extension for a species. Therefore, the increase of coding information quantity of a genome is a measure of the acquired new function, and it determines the directionality of genome evolution.

Keywords

genome evolution / function-coding information quantity growing / p-coding information quantity / n-coding information quantity / C-value paradox

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Liao-fu LUO (罗辽复). Law of genome evolution direction: Coding information quantity grows. Front. Phys., 2009, 4(2): 241‒251 https://doi.org/10.1007/s11467-009-0014-x

References

[1]
E. Schrodinger, What is Life?Cambridge: Cambridge University Press, 1944
[2]
T. R. Gregory, J. A. Nicol, and H. Tamm, Nucleic AcidsResearch, 2007, 35 (Database issue): D332
CrossRef ADS Google scholar
[3]
T. R. Gregory, Genome Size Evolution in Animals. In: Evolution of the Genome (Edited by T. R. Gregory), Elsevier Inc., 2005
[4]
T. Kouzarides, Cell, 2007, 128: 693
CrossRef ADS Google scholar
[5]
B. Lewin, Gene IX, Jones & Bartlet Publishers, Inc., 2008
[6]
L. F. Luo, Journal of Inner Mongolia University, 2005, 36: 653
[7]
L. F. Luo, Science in China Ser. C, 2006, 58: 24 (in Chinese)
[8]
S. E. Peters, Nature, 2008, 454: 626
CrossRef ADS Google scholar
[9]
M. Ridley, Evolution, 3rd Ed., Blackwell Publishing, 2004
[10]
R. J. Taft, M. Pheasant, and J. S. Mattick, BioEssays, 2007, 29 (3): 288
CrossRef ADS Google scholar
[11]
B. Lewin, Gene VIII, Pearson Education Inc., 2004
[12]
T. R. Gregory and R. DeSalle, Comparative Genomics in Prokaryotes. In: Evolution of the Genome (Edited by T. R. Gregory), Elsevier Inc., 2005
[13]
A. Mira, H. Ochman, and N. A. Moran, Trends Genet., 2001, 17: 589
CrossRef ADS Google scholar
[14]
D. A. Petrov, T. A. Sangster, J. S. Johnston, D. L. Hartl, and K. L. Shaw, Science, 2000, 287: 1060
CrossRef ADS Google scholar
[15]
I. Wapinski, A. Pfeffer, N. Friedman, and A. Regev, Nature, 2007, 449: 54
CrossRef ADS Google scholar
[16]
D. R. Scannell, K. P. Byrne, J. L. Gordon, S. Wong, and K. H. Wolfe, Nature, 2006, 440: 341
CrossRef ADS Google scholar
[17]
J.M. Aury, J. Olivier, L. Duret, ., Nature, 2006, 444:171
CrossRef ADS Google scholar
[18]
D. L. Des Marais and M. D. Ransher, Nature, 2008, 454:762
[19]
I. J. Leitch and M. D. Bennett, Biol. J. Linn. Soc., 2004, 82: 651
CrossRef ADS Google scholar
[20]
H. Ozkan, A. A. Levy, and M. Feldman, Plant Cell, 2001, 13: 1735
[21]
R. P. Bininda-Edmonds, M. Cardillo, K. E. Jones, ., Nature, 2007, 446:507
CrossRef ADS Google scholar
[22]
X. Xu and M. A. Norell, Nature, 2004, 431: 838
CrossRef ADS Google scholar
[23]
C. L. Organ, A. M. Shedlock, A. Meade, M. Pagel, and S. V. Edwards, Nature, 2007, 446:180
CrossRef ADS Google scholar
[24]
M. D. Bennett and I. J. Leitch, Genome Size Evolution in Plants. In: Evolution of the Genome (Edited by T. R. Gregory), Elsevier Inc., 2005
CrossRef ADS Google scholar
[25]
K. M. Devos, J. K. M. Brown, and J. L. Bennetzen, Genome Research, 2002, 12: 1075
CrossRef ADS Google scholar
[26]
J. Filkowski, O. Kowalchuk, and I. Kowalchuk, Plant Sci., 2004, 166: 265
CrossRef ADS Google scholar
[27]
W. Deng, X. Zhu, G. Skogerbo, ., Genome Research, 2006, 16: 20
CrossRef ADS Google scholar
[28]
The ENCODE Project Consortium, Nature, 2007, 447: 799
CrossRef ADS Google scholar
[29]
G. Storz, Science, 2002, 296: 1260
CrossRef ADS Google scholar
[30]
L. He and G. J. Hannon, Nature Rev. Genetics, 2004, 5: 522
CrossRef ADS Google scholar
[31]
A. G. Matera, R. M. Terns, and M. P. Terns, Nature Reviews, 2007, 8: 209
CrossRef ADS Google scholar
[32]
W. Makalowski, Science, 2003, 300: 1246
CrossRef ADS Google scholar
[33]
I. Wickelgren, Science, 2003, 300: 1646
CrossRef ADS Google scholar
[34]
E. T. Dermitzakis, A. Reymond, N. Scamuffa, C. Ucla, E. Kirkness, C. Rossier, and S. E. Antonarakis, Science, 2003, 302: 1033
CrossRef ADS Google scholar
[35]
G. Bejerano, M. Pheasant, I. Makunin, S. Stephen, W. J. Kent, J. S. Mattick, and D. Haussler, Science, 2004, 304: 1321
CrossRef ADS Google scholar
[36]
H. H. Kazazian, Science, 2004, 303: 1626
CrossRef ADS Google scholar
[37]
C. Nusbaum, M. C. Zody, and M. L. Borowsky, Nature, 2005, 437: 551
CrossRef ADS Google scholar
[38]
G. Liu, NISC Comparative sequencing Program, and E. Eichler, Genome Research, 2003, 13: 358
[39]
A. F. A. Smit, Curr. Opin. Genet. Dev., 1999, 9: 657
CrossRef ADS Google scholar
[40]
H. H. Chou, T. Hayakawa, S. Diaz, ., Proc. Natl. Acad. Sci. USA, 2002, 99: 11736
CrossRef ADS Google scholar
[41]
W. Enard, P. Khaitovitch, J. Klose, ., Science, 2002, 296: 340
CrossRef ADS Google scholar
[42]
H. Winter, L. Langbein, M. Krawczak, ., Human Genet., 2001, 108: 37
CrossRef ADS Google scholar
[43]
L. Patthy, Protein Evolution, Oxford: Blackwell Science, 1999
[44]
B. Charlesworth, P. Sniegowshi, and W. Stephan, Nature, 1994, 371: 215
CrossRef ADS Google scholar
[45]
L. F. Luo, Physical Aspects on Life Evolution, Shanghai: Shanghai Science &Technology Pub., 2000 (in Chinese)
[46]
T. C. Stadtman, Ann. Rev. Biochem., 1996, 65: 83
CrossRef ADS Google scholar
[47]
F. Clark and T. A. Thanaraj, Human Molecular Genetics, 2002, 11(4): 451
CrossRef ADS Google scholar
[48]
L. R. Zhang and L. F. Luo, Nucleic Acids Research, 2003, 31: 6214
CrossRef ADS Google scholar
[49]
W. H. Li, Molecular Evolution, Massachusetts: Sinauer Associates, 1997
[50]
International Human Genome Sequencing Consortium, Nature, 2001, 409: 860
CrossRef ADS Google scholar

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