Effects of high hydrostatic pressure treatment on bacterial composition in donkey milk studied by high throughput sequencing
Jiaqi Kong, Wahafu Luoyizha, Liang Zhao, Congcong Fan, Hehe Li, Hui Li
Effects of high hydrostatic pressure treatment on bacterial composition in donkey milk studied by high throughput sequencing
High hydrostatic pressure has become a non-thermal alternative to thermal pasteurization in dairy product processing. In this study, we investigated the effects of the treatment of high hydrostatic pressure on the bacterial composition in donkey milk using high-throughput sequencing technology and culture-dependent methods. Compared with the microbial composition in the untreated donkey milk, the relative percentage of Pseudomonas and Acinetobacter in donkey milk after high hydrostatic pressure was significantly decreased by 4.92% and 4.82%, respectively. Beta diversity analysis demonstrated that the treatment of high hydrostatic pressure affected the microbial composition in donkey milk significantly. The potential probiotic Enterococcus casseliflavus isolated from the untreated donkey milk has a good acidifying ability. This study revealed the effects of high hydrostatic pressure treatment on the microbial composition in donkey milk, exhibiting its practical industrial application and the potential use of biological resources in the future.
Donkey milk / High hydrostatic pressure / High-throughput sequencing / Bacterial composition
[1] |
Turchi B, Pedonese F, Torracca B, Fratini F, Mancini S, et al. Lactobacillus plantarum and Streptococcus thermophilus as starter cultures for a donkey milk fermented beverage International Journal of Food Microbiology. 2017, 256, 54-61
CrossRef
Google scholar
|
[2] |
Luo J, Jian S, Wang P, Ren F, Wang F, et al. Thermal instability and characteristics of donkey casein micelles Food Research International. 2019, 119, 436-43
CrossRef
Google scholar
|
[3] |
Cosentino C, Faraone D, Paolino R, Freschi P, Musto M. Short communication: Sensory profile and acceptability of a cow milk cheese manufactured by adding jenny milk Journal of Dairy Science. 2016, 99, 228-33
CrossRef
Google scholar
|
[4] |
Adduci F, Elshafie HS, Labella C, Musto M, Freschi P, et al. Abatement of the clostridial load in the teats of lactating cows with lysozyme derived from donkey milk Journal of Dairy Science. 2019, 102, 6750-55
CrossRef
Google scholar
|
[5] |
Giacometti F, Bardasi L, Merialdi G, Morbarigazzi M, Federici S, et al. Shelf life of donkey milk subjected to different treatment and storage conditions Journal of Dairy Science. 2016, 99, 4291-99
CrossRef
Google scholar
|
[6] |
Pitino MA, Unger S, Doyen A, Pouliot Y, Aufreiter S, et al. High hydrostatic pressure processing better preserves the nutrient and bioactive compound composition of human donor milk The Journal of Nutrition. 2019, 149, 497-504
CrossRef
Google scholar
|
[7] |
Gopal N, Hill C, Ross PR, Beresford TP, Fenelon MA, Cotter PD. The prevalence and control of Bacillusand related spore-forming bacteria in the dairy industry Frontiers in Microbiology. 2015, 6, 1418
CrossRef
Google scholar
|
[8] |
Chawla R, Patil GR, Singh AK. High hydrostatic pressure technology in dairy processing: a review Journal of Food Science and Technology. 2011, 48, 260-68
CrossRef
Google scholar
|
[9] |
Altuner EM, Alpas H, Erdem YK, Bozoglu F. Effect of high hydrostatic pressure on physicochemical and biochemical properties of milk European Food Research and Technology. 2006, 222, 392-96
CrossRef
Google scholar
|
[10] |
Tabla R, Martínez B, Rebollo JE, González J, Ramírez MR, et al. Bacteriophage performance against Staphylococcus aureus in milk is improved by high hydrostatic pressure treatments International Journal of Food Microbiology. 2012, 156, 209-13
CrossRef
Google scholar
|
[11] |
Dussault N, Cayer MP, Landry P, de Grandmont MJ, Cloutier M, et al. Comparison of the effect of holder pasteurization and high-pressure processing on human milk bacterial load and bioactive factors preservation Journal of Pediatric Gastroenterology and Nutrition. 2021, 72, 756-62
CrossRef
Google scholar
|
[12] |
Felipe X, Capellas M, Law AJR. Comparison of the effects of high-pressure treatments and heat pasteurization on the whey proteins in goat's milk Journal of Agricultural and Food Chemistry. 1997, 45, 627-31
CrossRef
Google scholar
|
[13] |
Papademas P, Mousikos P, Aspri M. Valorization of donkey milk: Technology, functionality, and future prospects JDS Communications. 2022, 3, 228-33
CrossRef
Google scholar
|
[14] |
Russo P, Fiocco D, Albenzio M, Spano G, Capozzi V. Microbial populations of fresh and cold stored donkey milk by high-throughput sequencing provide indication for a correct management of this high-value product Applied Sciences. 2020, 10, 2314
CrossRef
Google scholar
|
[15] |
Papademas P, Kamilari E, Aspri M, Anagnostopoulos DA, Mousikos P, et al. Investigation of donkey milk bacterial diversity by 16S rDNA high-throughput sequencing on a Cyprus donkey farm Journal of Dairy Science. 2021, 104, 167-78
CrossRef
Google scholar
|
[16] |
Luoyizha W, Wu X, Zhang M, Guo X, Li H, et al. Compared analysis of microbial diversity in donkey milk from Xinjiang and Shandong of China through High-throughput sequencing Food Research International. 2020, 137, 109684
CrossRef
Google scholar
|
[17] |
Murua A, Todorov SD, Vieira AD, Martinez RCR, Cencič A, et al. Isolation and identification of bacteriocinogenic strain of Lactobacillus plantarum with potential beneficial properties from donkey milk Journal of Applied Microbiology. 2013, 114, 1793-809
CrossRef
Google scholar
|
[18] |
Carminati D, Tidona F, Fornasari ME, Rossetti L, Meucci A, Giraffa G. Biotyping of cultivable lactic acid bacteria isolated from donkey milk Letters in Applied Microbiology. 2014, 59, 299-305
CrossRef
Google scholar
|
[19] |
Kathade SA, Aswani MA, Anand PK, Jagtap S, Bipinraj NK. Isolation of Lactobacillusfrom donkey dung and its probiotic characterization Korean Journal of Microbiology. 2020, 56, 160-69
CrossRef
Google scholar
|
[20] |
Yang B, Shi Y, Xia X, Xi M, Wang X, et al. Inactivation of foodborne pathogens in raw milk using high hydrostatic pressure Food control v.. 2012, 28, 273-78
CrossRef
Google scholar
|
[21] |
Tan SF, Chin NL, Tee TP, Chooi SK. Physico-chemical changes, microbiological properties, and storage shelf life of cow and goat milk from industrial high-pressure processing Processes. 2020, 8, 697
CrossRef
Google scholar
|
[22] |
Quigley L, O'Sullivan O, Beresford TP, Paul Ross R, Fitzgerald GF, et al. A comparison of methods used to extract bacterial DNA from raw milk and raw milk cheese Journal of applied microbiology. 2012, 113, 96-105
CrossRef
Google scholar
|
[23] |
Kresse SH, Namløs HM, Lorenz S, Berner JM, Myklebost O, et al. Evaluation of commercial DNA and RNA extraction methods for high-throughput sequencing of FFPE samples PLoS One. 2018, 13, e0197456
CrossRef
Google scholar
|
[24] |
Bagad M, Pande R, Ghosh AR. Determination of viability of pediococcus spp. gs4 after storage into hard gelatin capsule and its survival under in vitro simulated gastrointestinal condition Bagad International Journal of Research in Ayurveda and Pharmacy. 2012, 3, 233-37
|
[25] |
Li H, Garcia-Hernandez R, Driedger D, McMullen LM, Gänzle M. Effect of the food matrix on pressure resistance of Shiga-toxin producing Escherichia coli Food Microbiology. 2016, 57, 96-102
CrossRef
Google scholar
|
[26] |
Xiao L, Chen B, Feng D, Yang T, Li T, Chen J. TLR4 may be involved in the regulation of colonic mucosal microbiota by vitamin A Frontiers in Microbiology. 2019, 10, 268
CrossRef
Google scholar
|
[27] |
Al-Bahry SN, Elshafie AE, Al-Wahaibi YM, Al-Bemani AS, Joshi SJ, et al. Isolation and characterization of biosurfactant/biopolymer producing spore forming bacteria from oil contaminated sites and oil field of oman APCBEE Procedia. 2013, 5, 242-46
CrossRef
Google scholar
|
[28] |
Kioroglou D, Mas A, Portillo MC. High-throughput sequencing approach to analyze the effect of aging time and barrel usage on the microbial community composition of red wines Frontiers in Microbiology. 2020, 11, 562560
CrossRef
Google scholar
|
[29] |
Brooks ME, Epps HBG. Taxonomic studies of the genus Clostridium: Clostrididum bifermentans and C. sordellii Journal of General Microbiology. 1959, 21, 144-55
CrossRef
Google scholar
|
[30] |
Kamilari E, Anagnostopoulos DA, Papademas P, Efthymiou M, Tretiak S, et al. Snapshot of cyprus raw goat milk bacterial diversity via 16S rDNA high-throughput sequencing; Impact of cold storage conditions Fermentation. 2020, 6, 100
CrossRef
Google scholar
|
[31] |
Zhang F, Wang Z, Lei F, Wang B, Jiang S, et al. Bacterial diversity in goat milk from the Guanzhong area of China Journal of Dairy Science. 2017, 100, 7812-24
CrossRef
Google scholar
|
[32] |
Rahmeh R, Akbar A, Alomirah H, Kishk M, Al-Ateeqi A, et al. Camel milk microbiota: A culture-independent assessment Food Research International. 2022, 159, 111629
CrossRef
Google scholar
|
[33] |
Esteban-Blanco C, Gutiérrez-Gil B, Puente-Sánchez F, Marina H, Tamames J, et al. Microbiota characterization of sheep milk and its association with somatic cell count using 16s rRNA gene sequencing Journal of Animal Breeding and Genetics. 2020, 137, 73-83
CrossRef
Google scholar
|
[34] |
Li L, Renye Jr JA, Feng L, Zeng Q, Tang Y, et al. Characterization of the indigenous microflora in raw and pasteurized buffalo milk during storage at refrigeration temperature by high-throughput sequencing Journal of Dairy Science. 2016, 99, 7016-24
CrossRef
Google scholar
|
[35] |
Porcellato D, Aspholm M, Skeie SB, Monshaugen M, Brendehaug J, Mellegård H. Microbial diversity of consumption milk during processing and storage International Journal of Food Microbiology. 2018, 266, 21-30
CrossRef
Google scholar
|
[36] |
Rajawardana DU, Fernando PC, Biggs PJ, Hewajulige IGN, Nanayakkara CM, et al. An insight into tropical milk microbiome: Bacterial community composition of cattle milk produced in Sri Lanka International Dairy Journal. 2022, 126, 105266
CrossRef
Google scholar
|
[37] |
Ragland SA, Criss AK. From bacterial killing to immune modulation: Recent insights into the functions of lysozyme PLoS Pathogens. 2017, 13, e1006512
CrossRef
Google scholar
|
[38] |
Masschalck B, Van Houdt R, Van Haver EGR, Michiels CW. Inactivation of gram-negative bacteria by lysozyme, denatured lysozyme, and lysozyme-derived peptides under high hydrostatic pressure Applied and Environmental Microbiology. 2001, 67, 339-44
CrossRef
Google scholar
|
[39] |
Buffa M, Guamis B, Royo C, Trujillo AJ. Microbiological changes throughout ripening of goat cheese made from raw, pasteurized and high-pressure-treated milk Food Microbiology. 2001, 18, 45-51
CrossRef
Google scholar
|
[40] |
Yu H, Bian Z, Mu S, Yuan J, Chen F. Effects of climate change on land cover change and vegetation dynamics in Xinjiang, China International Journal of Environmental Research and Public Health. 2020, 17, 4865
CrossRef
Google scholar
|
[41] |
Luoyizha W, Zeng B, Li H, Liao X. A preliminary study of proteomic analysis on caseins and whey proteins in donkey milk from Xinjiang and Shandong of China eFood. 2021, 2, 27-36
CrossRef
Google scholar
|
[42] |
de Oliveira GB, Favarin L, Luchese RH, McIntosh D. Psychrotrophic bacteria in milk: How much do we really know? Brazilian Journal of Microbiology. 2015, 46, 313-21
CrossRef
Google scholar
|
[43] |
Craig K, Johnson BR, Grunden A. Leveraging Pseudomonas stress response mechanisms for industrial applications Frontiers in Microbiology. 2021, 12, 660134
CrossRef
Google scholar
|
[44] |
Keto-Timonen R, Hietala N, Palonen E, Hakakorpi A, Lindström M, et al. Cold shock proteins: A minireview with special emphasis on Csp-family of Enteropathogenic Yersinia Frontiers in microbiology. 2016, 7, 1151
CrossRef
Google scholar
|
[45] |
Deshwal VK, Chaubey A. Isolation and Characterization of Rhizobium leguminosarum from Root nodule of Pisum sativum L Journal of Academia and Industrial Research. 2014, 2, 464-67
|
[46] |
Franz CM, Holzapfel WH, Stiles ME. Enterococciat the crossroads of food safety? International Journal of Food Microbiology. 1999, 47, 1-24
CrossRef
Google scholar
|
[47] |
Suzzi G, Caruso M, Gardini F, Lombardi A, Vannini L, et al. A survey of the enterococciisolated from an artisanal Italian goat's cheese (semicotto caprino) Journal of Applied Microbiology. 2000, 89, 267-74
CrossRef
Google scholar
|
[48] |
Serio A, Chaves-López C, Paparella A, Suzzi G. Evaluation of metabolic activities of enterococciisolated from Pecorino Abruzzese cheese International Dairy Journal. 2010, 20, 459-64
CrossRef
Google scholar
|
[49] |
Wuytack EY, Diels AMJ, Michiels CW. Bacterial inactivation by high-pressure homogenisation and high hydrostatic pressure International Journal of Food Microbiology. 2002, 77, 205-12
CrossRef
Google scholar
|
[50] |
Ramaswamy HS, Jin H, Zhu S. Effects of fat, casein and lactose on high-pressure destruction of Escherichia coli K12 (ATCC-29055) in milk Food and Bioproducts Processing. 2009, 87, 1-6
CrossRef
Google scholar
|
[51] |
Podolak R, Whitman D, Black DG. Factors affecting microbial inactivation during high pressure processing in juices and beverages: A review Journal of Food Protection. 2020, 83, 1561-75
CrossRef
Google scholar
|
[52] |
[53] |
Remold SK, Brown CK, Farris JE, Hundley TC, Perpich JA, et al. Differential habitat use and niche partitioning by Pseudomonas species in human homes Microbial Ecology. 2011, 62, 505-17
CrossRef
Google scholar
|
[54] |
Vila J, Martí S, Sánchez-Céspedes J. Porins, efflux pumps and multidrug resistance in Acinetobacter baumannii The Journal of Antimicrobial Chemotherapy. 2007, 59, 1210-5
CrossRef
Google scholar
|
[55] |
Lazaretti WY, dos Santos EL, da-Conceição Silva JL, Kadowaki MK, Gandra RF, et al. Upregulation of the clpBgene in response to heat shock and beta-lactam antibiotics in Acinetobacter baumannii Molecular Biology Reports. 2019, 47, 1499-505
CrossRef
Google scholar
|
[56] |
Gurung M, Nam HM, Tamang MD, Chae MH, Jang GC, et al. Prevalence and antimicrobial susceptibility of Acinetobacterfrom raw bulk tank milk in Korea Journal of Dairy Science. 2013, 96, 1997-2002
CrossRef
Google scholar
|
[57] |
Mercer RG, Zheng J, Garcia-Hernandez R, Ruan L, Gänzle MG, McMullen LM. Genetic determinants of heat resistance in Escherichia coli Frontiers in Microbiology. 2015, 6, 932
CrossRef
Google scholar
|
[58] |
Li H, Mercer R, Behr J, Heinzlmeir S, McMullen LM, et al. Heat and pressure resistance in Escherichia coli relates to protein folding and aggregation Frontiers in microbiology. 2020, 11, 111
CrossRef
Google scholar
|
[59] |
McInnes RS, McCallum GE, Lamberte LE, van Schaik W. Horizontal transfer of antibiotic resistance genes in the human gut microbiome Current Opinion in Microbiology. 2020, 53, 35-43
CrossRef
Google scholar
|
/
〈 | 〉 |