Reliable preservation and reactivation of functional fungal-bacterial granules (FBGs) is a key barrier to fungal-based wastewater treatment, particularly in cold regions where biomass start-up and recovery are slow and unstable. Preservation has been studied for aerobic granular sludge (AGS) and fungal pellets, but a systematic framework for FBGs is lacking. Here, the short-term preservation and reactivation of FBGs after three days of storage was systematically evaluated by comparing deep freezing (−80 °C), moderate freezing (−15 °C), and room-temperature drying, followed by structural and functional reactivation under room-temperature and low-temperature (15 °C) wastewater treatment conditions. Freezing preserved granule integrity and biomass quality, whereas drying reduced the organic fraction and impaired settleability, particularly under low-temperature conditions. At room temperature, all preserved FBGs achieved high chemical oxygen demand (COD) removal (93%–97%) and effective NH4+-N removal (74%–79%), with −15 °C preservation providing the most stable reactivation and settleability. Microsensor profiling indicated that −15 °C preservation supported deeper oxygen penetration at room temperature, whereas −80 °C FBGs maintained higher near-surface oxygen at 15 °C. At 15 °C, COD removal remained high (84%–87%), whereas NH4+-N removal was moderate (35%–37%), suggesting limited ammonium-transformation capacity. One-way ANOVA indicated statistically insignificant differences (p > 0.05) among preservation strategies for COD, NH4+-N, or NO3−-N removal after acclimation. Preserved FBGs retained bacterial and fungal taxa associated with biofilm formation, stress tolerance, or granule stability, whereas control FBGs disintegrated under cold stress. Overall, FBGs withstood short-term preservation and were reactivated without compromising structural integrity or organic-matter removal under the conditions tested.
| [1] |
Alidoosti F , Giyahchi M , Moghimi H . (2025). Synergistic bioremediation: fungal-bacterial partnership degrades LDPE microplastics twice as fast. Current Research in Microbial Sciences, 9: 100450
|
| [2] |
Almeida Jr H L d , Assis T d M , Faria E C , Gimenes V M F . (2025). White piedra: fungal extracellular matrix formation and its importance in pathogenesis—An ultrastructural study. Anais Brasileiros de Dermatologia, 100(4): 501140
|
| [3] |
Alster C J , Weller Z D , von Fischer J C . (2018). A meta-analysis of temperature sensitivity as a microbial trait. Global Change Biology, 24(9): 4211–4224
|
| [4] |
Anandharamakrishnan C, Ishwarya S P (2019). Essentials and Applications of Food Engineering. Boca Raton: CRC Press
|
| [5] |
Assress H A , Selvarajan R , Nyoni H , Ntushelo K , Mamba B B , Msagati T A M . (2019). Diversity, co-occurrence and implications of fungal communities in wastewater treatment plants. Scientific Reports, 9(1): 14056
|
| [6] |
Bergfur J , Friberg N . (2012). Trade-offs between fungal and bacterial respiration along gradients in temperature, nutrients and substrata: experiments with stream derived microbial communities. Fungal Ecology, 5(1): 46–52
|
| [7] |
Boonchan S , Britz M L , Stanley G A . (2000). Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures. Applied and Environmental Microbiology, 66(3): 1007–1019
|
| [8] |
Briones A , Raskin L . (2003). Diversity and dynamics of microbial communities in engineered environments and their implications for process stability. Current Opinion in Biotechnology, 14(3): 270–276
|
| [9] |
Chen M X , Zhu X Y , Yan D S , Teng Y H , Zhang G D , Li Y , Chen Q H , Jiao Y , Xie X M , Li S S . (2025). Effects of C/N ratio on performance, enzyme activity and microbial community in a bacteria-algal symbiotic MBBR for mariculture wastewater treatment. Journal of Environmental Chemical Engineering, 13(2): 115820
|
| [10] |
Chen S H , He S Y , Wu C J , Du D Y . (2019). Characteristics of heterotrophic nitrification and aerobic denitrification bacterium Acinetobacter sp. T1 and its application for pig farm wastewater treatment. Journal of Bioscience and Bioengineering, 127(2): 201–205
|
| [11] |
Chen W M , Moulin L , Bontemps C , Vandamme P , Béna G , Boivin-Masson C . (2003). Legume symbiotic nitrogen fixation by β-proteobacteria is widespread in nature. Journal of Bacteriology, 185(24): 7266–7272
|
| [12] |
Costa O Y , Raaijmakers J M , Kuramae E E . (2018). Microbial extracellular polymeric substances: ecological function and impact on soil aggregation. Frontiers in Microbiology, 9: 1636
|
| [13] |
Crowe J H , Carpenter J F , Crowe L M , Anchordoguy T J . (1990). Are freezing and dehydration similar stress vectors? A comparison of modes of interaction of stabilizing solutes with biomolecules. Cryobiology, 27(3): 219–231
|
| [14] |
Davis D J , Burlak C , Money N P . (2000). Osmotic pressure of fungal compatible osmolytes. Mycological Research, 104(7): 800–804
|
| [15] |
de Klein J J M , Overbeek C C , Juncher Jørgensen C , Veraart A J . (2017). Effect of temperature on oxygen profiles and denitrification rates in freshwater sediments. Wetlands, 37(5): 975–983
|
| [16] |
de Kreuk M K , Pronk M , Van Loosdrecht M C M . (2005). Formation of aerobic granules and conversion processes in an aerobic granular sludge reactor at moderate and low temperatures. Water Research, 39(18): 4476–4484
|
| [17] |
Deffur C , Dinius A , Pagel J , Müller H , Schmideder S , Briesen H , Krull R . (2025). Oxygen consumption in filamentous pellets of Aspergillus niger: microelectrode measurements and modeling. Biotechnology and Bioengineering, 122(2): 306–321
|
| [18] |
Donlan R M , Costerton J W . (2002). Biofilms: survival mechanisms of clinically relevant microorganisms. Clinical Microbiology Reviews, 15(2): 167–193
|
| [19] |
Duarte K L S , Castellanos R M , Costa R C , Mahler C F , Bassin J P . (2021). Start-up of an aerobic granular sludge system from stored granules: evaluating the impact of storage period on biomass activity and stability and the effect of temperature on nitrification and phosphorus removal rates. Journal of Environmental Management, 296: 113200
|
| [20] |
Ducey T F , Vanotti M B , Shriner A D , Szogi A A , Ellison A Q . (2010). Characterization of a microbial community capable of nitrification at cold temperature. Bioresource Technology, 101(2): 491–500
|
| [21] |
Espinosa-Ortiz E J , Rene E R , Gerlach R . (2022). Potential use of fungal-bacterial co-cultures for the removal of organic pollutants. Critical Reviews in Biotechnology, 42(3): 361–383
|
| [22] |
Espinosa-Ortiz E J , Rene E R , Pakshirajan K , van Hullebusch E D , Lens P N L . (2016). Fungal pelleted reactors in wastewater treatment: applications and perspectives. Chemical Engineering Journal, 283: 553–571
|
| [23] |
Fan L L , Sun F L . (2024). Nitrogen metabolism potential in biofilm microbial communities: potential applications in the mariculture wastewater treatment. Aquacultural Engineering, 104: 102387
|
| [24] |
Frey-Klett P , Burlinson P , Deveau A , Barret M , Tarkka M , Sarniguet A . (2011). Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists. Microbiology and Molecular Biology Reviews, 75(4): 583–609
|
| [25] |
García-Reyes M , Beltrán-Hernández R I , Vázquez-Rodríguez G A , Coronel-Olivares C , Medina-Moreno S A , Juárez-Santillán L F , Lucho-Constantino C A . (2017). Formation, morphology and biotechnological applications of filamentous fungal pellets: a review. Revista Mexicana de Ingeniería Química, 16(3): 703–720
|
| [26] |
Godinho O , Devos D P , Quinteira S , Lage O M . (2024). The influence of the phylum Planctomycetota in the environmental resistome. Research in Microbiology, 175(5−6): 104196
|
| [27] |
Gunner H B . (1963). Nitrification by Arthrobacter globiformis. Nature, 197(4872): 1127–1128
|
| [28] |
Gupta R K , Poddar B J , Nakhate S P , Chavan A R , Singh A K , Purohit H J , Khardenavis A A . (2022). Role of heterotrophic nitrifiers and aerobic denitrifiers in simultaneous nitrification and denitrification process: a nonconventional nitrogen removal pathway in wastewater treatment. Letters in Applied Microbiology, 74(2): 159–184
|
| [29] |
Hallsworth J E , Magan N . (1996). Culture age, temperature, and pH affect the polyol and trehalose contents of fungal propagules. Applied and Environmental Microbiology, 62(7): 2435–2442
|
| [30] |
Harms H , Schlosser D , Wick L Y . (2011). Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nature Reviews Microbiology, 9(3): 177–192
|
| [31] |
Hayatsu M , Tago K , Saito M . (2008). Various players in the nitrogen cycle: diversity and functions of the microorganisms involved in nitrification and denitrification. Soil Science and Plant Nutrition, 54(1): 33–45
|
| [32] |
Homyok P , Limpiyakorn T , Rongsayamanont C . (2026). Effect of surfactant on bioflocculation and organic redirection in high-rate A-stage processes. Environmental Science and Pollution Research,, 33(21): 10535–10549
|
| [33] |
Hora T S , Iyengar M R S . (1960). Nitrification by soil fungi. Archiv für Mikrobiologie, 35(3): 252–257
|
| [34] |
Jeyakumar D , Chirsteen J , Doble M . (2013). Synergistic effects of pretreatment and blending on fungi mediated biodegradation of polypropylenes. Bioresource Technology, 148: 78–85
|
| [35] |
Ji X M , Liu M H , Yang J L , Feng F J . (2022). Meta-analysis of the impact of freeze–thaw cycles on soil microbial diversity and C and N dynamics. Soil Biology and Biochemistry, 168: 108608
|
| [36] |
Kaisermann A , Maron P A , Beaumelle L , Lata J C . (2015). Fungal communities are more sensitive indicators to non-extreme soil moisture variations than bacterial communities. Applied Soil Ecology, 86: 158–164
|
| [37] |
Kennes C , Veiga M C . (2004). Fungal biocatalysts in the biofiltration of VOC-polluted air. Journal of Biotechnology, 113(1−3): 305–319
|
| [38] |
Kersters K, De Vos P, Gillis M, Swings J, Vandamme P, Stackebrandt E (2006). Introduction to the proteobacteria. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K H, Stackebrandt E, eds. The Prokaryotes. New York: Springer, 3–37
|
| [39] |
Kotterman M J , Vis E H , Field J A . (1998). Successive mineralization and detoxification of benzo[a]pyrene by the white rot fungus Bjerkandera sp. strain BOS55 and indigenous microflora. Applied and Environmental Microbiology, 64(8): 2853–2858
|
| [40] |
Kües U . (2015). Fungal enzymes for environmental management. Current Opinion in Biotechnology, 33: 268–278
|
| [41] |
Lee K W K , Periasamy S , Mukherjee M , Xie C , Kjelleberg S , Rice S A . (2014). Biofilm development and enhanced stress resistance of a model, mixed-species community biofilm. The ISME Journal, 8(4): 894–907
|
| [42] |
Li Y , Liu Y , Shen L , Chen F . (2008). DO diffusion profile in aerobic granule and its microbiological implications. Enzyme and Microbial Technology, 43(4−5): 349–354
|
| [43] |
Li Z Y , Cui Y W , Liang H K , Yan H J , Yang R C . (2025). Tetracycline degradation by a mixed culture of halotolerant fungi-bacteria under static magnetic field: Mechanism and antibiotic resistance genes transfer. Journal of Hazardous Materials, 492: 138181
|
| [44] |
Liu L , Xin Y , Tong Z H , Zheng Y M , Xie J F , Zhao Q B , Yu H Q . (2022). Storage strategy of aerobic algae-bacteria granular consortia in photo-sequencing batch reactor. Journal of Cleaner Production, 363: 132410
|
| [45] |
Liu X Y , Li R J , Chen R , Chen Y , Zeng A , Deng Y B , Ma J X , Chen M . (2021). Formation of filamentous fungal pellets in aerobic granular sludge via reducing temperature and dissolved oxygen: characteristics of filamentous fungi and denitrification performance. Bioresource Technology, 332: 125056
|
| [46] |
Liu Y X , Hu T T , Zhao J , Lv Y K , Ren R P . (2017). Simultaneous removal of carbon and nitrogen by mycelial pellets of a heterotrophic nitrifying fungus-Penicillium sp. L1. Journal of Bioscience and Bioengineering, 123(2): 223–229
|
| [47] |
Ma Y H , Shu H , Lu H J , Zhou J Y , Zhao J C , Liu F K , Liu Y T , Lai X H , Lin J D , Guo Q . et al. (2025). Identification of novel strain Acinetobacter baumannii H1 and its improvement capacity for nutrient removal after coimmobilized on activated carbon and CaCO3 in real aquaculture wastewater. Environmental Research, 279: 121809
|
| [48] |
Magurran A E . (2021). Measuring biological diversity. Current Biology, 31(19): R1174–R1177
|
| [49] |
Marín I (2023). Proteobacteria. In: Gargaud M, Irvine W M, Amils R, Claeys P, Cleaves H J, Gerin M, Rouan D, Spohn T, Tirard S, Viso M, eds. Encyclopedia of Astrobiology. 3rd ed. Berlin: Springer, 2483–2484
|
| [50] |
Mawad A M M, Hesham A E L, Khan S, Nawab J (2020). The role of fungi and genes for the removal of environmental contaminants from water/wastewater treatment plants. In: Hesham A E L, Upadhyay R S, Sharma G D, Manoharachary C, Gupta V K, eds. Fungal Biotechnology and Bioengineering. Cham: Springer, 349–370
|
| [51] |
McKenzie A T , Thorn E L , Nnadi O , Wróbel B , Kendziorra E , Farrell K , Crary J F . (2024). Cryopreservation of brain cell structure: a review. Free Neuropathology, 5: 35
|
| [52] |
Mee M T , Wang H H . (2012). Engineering ecosystems and synthetic ecologies. Molecular BioSystems, 8(10): 2470–2483
|
| [53] |
Mi Y N , Cui Y W , Zhou D X , Yan H J , Jiang L X , Li M T . (2025). Alkalinity role in recovery of disintegrated halophilic aerobic granular sludge treating high salt-alkali wastewater: insights into community ecology of fungi and bacteria. Chemical Engineering Journal, 518: 164554
|
| [54] |
Mota R, Flores C, Tamagnini P (2021). Cyanobacterial extracellular polymeric substances (EPS). In: Oliveira J M, Radhouani H, Reis R L, eds. Polysaccharides of Microbial Origin: Biomedical Applications. Cham: Springer, 1–28
|
| [55] |
Negi B B , Das C . (2023). Mycoremediation of wastewater, challenges, and current status: A review. Bioresource Technology Reports, 22: 101409
|
| [56] |
Negi B B , Znad H , Das C . (2025). Dual-functional waste fungal pellets of Phanerochaete chrysosporium for textile wastewater treatment: a waste to treat waste strategy. Sustainable Materials and Technologies, 45: e01616
|
| [57] |
Pan Y Y , Zhang W J , Xu Z J , Zuo Z W , Yuan T . (2024). Fungal community shows more variations by season and particle size than bacteria. Science of the Total Environment, 925: 171584
|
| [58] |
Pang Z Q , Lu Y , Zhou G Y , Hui F N , Xu L , Viau C , Spigelman A F , MacDonald P E , Wishart D S , Li S Z . et al. (2024). MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation. Nucleic Acids Research, 52(W1): W398–W406
|
| [59] |
Paulo A M S , Amorim C L , Costa J , Mesquita D P , Ferreira E C , Castro P M L . (2021). Long-term stability of a non-adapted aerobic granular sludge process treating fish canning wastewater associated to EPS producers in the core microbiome. Science of The Total Environment, 756: 144007
|
| [60] |
Pessi I S , Viitamäki S , Virkkala A M , Eronen-Rasimus E , Delmont T O , Marushchak M E , Luoto M , Hultman J . (2022). In-depth characterization of denitrifier communities across different soil ecosystems in the tundra. Environmental Microbiome, 17(1): 30
|
| [61] |
Qi Z , Jia T P , Cong W J , Xi J Y . (2025). The mitigation efficacy and mechanism for H2S and CH4 emission from wastewater by adding bacterium-fungus mixture. Journal of Water Process Engineering, 75: 107889
|
| [62] |
Rice E W, Baird R B, Eaton A D, Clesceri L S (2012). Standard Methods for the Examination of Water and Wastewater. Washington, DC: American Public Health Association
|
| [63] |
Rieger L, Gillot S, Langergraber G, Ohtsuki T, Shaw A, Takacs I, Winkler S (2013). Guidelines for Using Activated Sludge Models. London: IWA Publishing
|
| [64] |
Rong C , Luo Z B , Wang T J , Qin Y , Wu J , Guo Y , Hu Y S , Kong Z , Hanaoka T , Sakemi S . et al. (2022). Biomass retention and microbial segregation to offset the impacts of seasonal temperatures for a pilot-scale integrated fixed-film activated sludge partial nitritation-anammox (IFAS-PN/A) treating anaerobically pretreated municipal wastewater. Water Research, 225: 119194
|
| [65] |
Semple K T , Doick K J , Wick L Y , Harms H . (2007). Microbial interactions with organic contaminants in soil: definitions, processes and measurement. Environmental Pollution, 150(1): 166–176
|
| [66] |
Song T , Zhang X L , Li J , Wu X Y , Feng H X , Dong W Y . (2021). A review of research progress of heterotrophic nitrification and aerobic denitrification microorganisms (HNADMs). Science of the Total Environment, 801: 149319
|
| [67] |
Stewart P S . (2003). Diffusion in biofilms. Journal of Bacteriology, 185(5): 1485–1491
|
| [68] |
Subramanian S B , Yan S , Tyagi R D , Surampalli R Y . (2008). A new, pellet-forming fungal strain: its isolation, molecular identification, and performance for simultaneous sludge‐solids reduction, Flocculation, and Dewatering. Water Environment Research, 80(9): 840–852
|
| [69] |
Tan H , Kong D , Ma Q , Li Q , Zhou Y , Jiang X , Wang Z , Parales R E , Ruan Z . (2022). Biodegradation of tetracycline antibiotics by the yeast strain Cutaneotrichosporon dermatis M503. Micro-organisms, 10(3): 565
|
| [70] |
Tanavarotai K , Kamyab H , Nor Anuar A , Khademi T , Yuzir A , Ashokkumar V , Rezania S . (2022). Storage and reactivation of aerobic granular sludge: a review. Fuel, 330: 125536
|
| [71] |
Tarkka M T , Sarniguet A , Frey-Klett P . (2009). Inter-kingdom encounters: recent advances in molecular bacterium–fungus interactions. Current Genetics, 55(3): 233–243
|
| [72] |
The Galaxy Community . (2024). The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update. Nucleic Acids Research, 52(W1): W83–W94
|
| [73] |
Tice H , Mayilraj S , Sims D , Lapidus A , Nolan M , Lucas S , Glavina Del Rio T , Copeland A , Cheng J F , Meincke L . et al. (2010). Complete genome sequence of Nakamurella multipartita type strain (Y-104T). Standards in Genomic Sciences, 2(2): 168–175
|
| [74] |
Wang L Q , Yu Q L , Huang M Y . (2010). Screening and nitrogen transformation activity of ammonia-oxidizing molds during aerobic chicken manure composting. Environmental Science, 31(11): 2763–2767
|
| [75] |
Wang M N , Li J M , Ning S X , Fu X M , Wang X H , Tan L . (2022). Simultaneously enhanced treatment efficiency of simulated hypersaline azo dye wastewater and membrane antifouling by a novel static magnetic field membrane bioreactor (SMFMBR). Science of the Total Environment, 821: 153452
|
| [76] |
Wang X H , Zhang H M , Yang F L , Wang Y F , Gao M M . (2008). Long-term storage and subsequent reactivation of aerobic granules. Bioresource Technology, 99(17): 8304–8309
|
| [77] |
Wang Z K , Zhang S L , Li C L , Geng Z C , Sun L T , Zhang L Z , Cao Z Q . (2024). Restoration via the aggregate spray-seeding technique affected the soil proteobacteria on an Uninhabited Island: community structure, metabolic function, nutritional type, and life strategy. Global Ecology and Conservation, 53: e03009
|
| [78] |
Wei B H , Luo X , Ma W K , Lv P Y . (2022). Biological nitrogen removal and metabolic characteristics of a novel cold-resistant heterotrophic nitrification and aerobic denitrification Rhizobium sp. WS7. Bioresource Technology, 362: 127756
|
| [79] |
West S A , Cooper G A . (2016). Division of labour in microorganisms: an evolutionary perspective. Nature Reviews Microbiology, 14(11): 716–723
|
| [80] |
Yang N , Zhou C N , Li Y , Deng Y J . (2025). Microbial specialists in high-altitude forest soils: environmental sensitivity and ecological significance. Frontiers of Environmental Science & Engineering, 19(3): 30
|
| [81] |
Yao S , Ni J R , Chen Q , Borthwick A G L . (2013). Enrichment and characterization of a bacteria consortium capable of heterotrophic nitrification and aerobic denitrification at low temperature. Bioresource Technology, 127: 151–157
|
| [82] |
Ye R , Huo W Z , Zheng X Y , Shao Y C , Wang H T , Lu W J . (2023). Effect of temperature on fungal nitrification in simulated in-situ aeration of aged MSW landfill. Chemosphere, 344: 140286
|
| [83] |
Zhang F M , Knapp J S , Tapley K N . (1999). Development of bioreactor systems for decolorization of Orange II using white rot fungus. Enzyme and Microbial Technology, 24(1−2): 48–53
|
| [84] |
Zhang M , Yang Y W , Su X M , Sun F Q , Liu J B , Chen Y , Lu D , Dong F , Xiao X , Zhou Y . (2025a). Freezing-activated oxidation with nitrite and H2O2 for efficient waste activated sludge solubilization and filterability. Water Research, 285: 124196
|
| [85] |
Zhang M , Zhang C L , Cheng Z W , Zhao B X , Yan Y X , Deng Z Y , Zhao L Y , Xia Y . (2025b). Impact of different DNA enrichment methods on 16S rRNA amplicon based and nanopore metagenomic sequencing based microbial investigation of low biomass samples. Frontiers of Environmental Science & Engineering, 19(10): 140
|
| [86] |
Zhang S Q , Fan F Q , Meng F G . (2020). Seasonality and community separation of fungi in a municipal wastewater treatment plant. Applied and Environmental Microbiology, 86(18): e00991–20
|
| [87] |
Zhang Y H , Dong X C , Nuramkhaan M , Lei Z F , Shimizu K , Zhang Z Y , Adachi Y , Lee D J , Tay J H . (2019). Rapid granulation of aerobic granular sludge: a mini review on operation strategies and comparative analysis. Bioresource Technology Reports, 7: 100206
|
| [88] |
Zhao Z W , Wang S , Shi W X , Li J . (2013). Recovery of stored aerobic granular sludge and its contaminants removal efficiency under different operation conditions. BioMed Research International, 2013: 168581
|
| [89] |
Zilouei H , Soares A , Murto M , Guieysse B , Mattiasson B . (2006). Influence of temperature on process efficiency and microbial community response during the biological removal of chlorophenols in a packed-bed bioreactor. Applied Microbiology and Biotechnology, 72(3): 591–599
|
| [90] |
Zou J J , Dai C M , Hu J J , Tong W K , Gao M T , Zhang Y L , Leong K H , Fu R B , Zhou L . (2024). A novel mycelial pellet applied to remove polycyclic aromatic hydrocarbons: High adsorption performance & its mechanisms. Science of the Total Environment, 922: 171201
|
| [91] |
Zuo X T , Xu W , Wei S P , Jiang S C , Luo Y , Ling M H , Zhang K , Gao Y H , Wang Z C , Hu J G . et al. (2023). Aerobic denitrifying bacterial-fungal consortium mediating nitrate removal: dynamics, network patterns and interactions. iScience, 26(6): 106824
|
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