Superior performance of natural electron shuttles over a synthetic analogue in promoting electrogenic hydrocarbon degradation in contaminated soil

Fanghui Chen , Shuhan Xing , Jiajun Lu , Jing He , Yingying Gu , Xiaojing Li

ENG. Environ. ›› 2026, Vol. 20 ›› Issue (9) : 145

PDF (12093KB)
ENG. Environ. ›› 2026, Vol. 20 ›› Issue (9) :145 DOI: 10.1007/s11783-026-2245-2
RESEARCH ARTICLE
Superior performance of natural electron shuttles over a synthetic analogue in promoting electrogenic hydrocarbon degradation in contaminated soil
Author information +
History +
PDF (12093KB)

Abstract

The application of microbial electrochemical system (MES) is limited by the slow rate of extracellular electron transfer in soil remediation. In this study, we evaluated the effects of shuttles, including anthraquinone-2,6-disulfonic acid disodium salt (AQDS), phenazine (PHE), and L-cysteine (CYS) on electricity generation, petroleum hydrocarbon degradation, and the microbial community in a soil MES. The results demonstrated that PHE and CYS enhanced the electron transfer flux by 30% and 22%, respectively, with 10%–18% higher than AQDS. Notably, CYS treatment resulted in the highest removal of petroleum hydrocarbons with a 152% increase which was 164% more than AQDS treatment, and specific degradation selectivity towards benzo[a]pyrene and long-chain alkanes. The addition of glucose as a cosubstrate universally increased the voltage output, confirming carbon source availability as a key limiting factor for electron transfer. Biological analysis revealed that electron shuttle addition reshaped the soil bacterial community structure and increased network complexity. Essentially, PHE not only functioned as an electron shuttle to promote cytochrome c expression but also stimulated Pseudomonas to overexpress endogenous phenazine compounds via quorum sensing. CYS served as both a sulphur source and a redox mediator, significantly increasing NAD(H) levels, and enriching electroactive bacteria with hydrocarbon degradation capability, such as Marinobacter and Clostridium. These findings clarify the potential of quinone- and cysteine-shuttles in pollutant degradation, providing an enhancement strategy for soil remediation.

Graphical abstract

Keywords

Soil remediation / Petroleum hydrocarbon degradation / Electrochemical system / Electron shuttles / Microbial community

Highlight

● Phenazine and L-cysteine boosted electron transfer flux by 22%–30% in soil, outperforming AQDS.

● Removal of TPHs improved by 152%, especially for benzo[a]pyrene and long-chain alkanes.

● Availability of carbon source was identified as a bottleneck for extracellular electron transfer.

● Exogenous shuttles stimulated the biosynthesis of endogenous PCA and PYO.

● Enhancement of electron transport enriched electrogenic hydrocarbon degraders.

Cite this article

Download citation ▾
Fanghui Chen, Shuhan Xing, Jiajun Lu, Jing He, Yingying Gu, Xiaojing Li. Superior performance of natural electron shuttles over a synthetic analogue in promoting electrogenic hydrocarbon degradation in contaminated soil. ENG. Environ., 2026, 20(9): 145 DOI:10.1007/s11783-026-2245-2

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Aeppli M , Giroud S , Vranic S , Voegelin A , Hofstetter T B , Sander M . (2022). Thermodynamic controls on rates of iron oxide reduction by extracellular electron shuttles. Proceedings of the National Academy of Sciences of the United States of America, 119(3): e2115629119

[2]

Aftab Q , Wang X Y , Lu J F , Tariq M , Liu Y X . (2025). Advancing soil microbial fuel cells: exploring bioelectrogenesis mechanisms for integration into environmental bioremediation. Renewable and Sustainable Energy Reviews, 214: 115495

[3]

Camedda C , Hoelzle R D , Carucci A , Milia S , Virdis B . (2019). A facile method to enhance the performance of soil bioelectrochemical systems using in situ reduced graphene oxide. Electrochimica Acta, 324: 134881

[4]

Chen H Y , Jing Q F , Liu X , Zhou X H , Fang C M , Li B , Zhou S R , Nie M . (2022a). Microbial respiratory thermal adaptation is regulated by r-/K-strategy dominance. Ecology Letters, 25(11): 2489–2499

[5]

Chen X D , Han T , Miao X Y , Zhang X L , Zhao L X , Sun Y , Ye H K , Li X J , Li Y T . (2022b). Ferrihydrite enhanced the electrogenic hydrocarbon degradation in soil microbial electrochemical remediation. Chemical Engineering Journal, 446: 136901

[6]

Chen X D , Li X J , Li Y , Zhao L X , Sun Y , Rushimisha I E , Han T , Weng L P , Lin X M , Li Y T . (2021). Bioelectric field drives ion migration with the electricity generation and pollutant removal. Environmental Technology & Innovation, 24: 101901

[7]

Chu C H , Zhu L Z . (2024). Paving the way toward soil safety and health: current status, challenges, and potential solutions. Frontiers of Environmental Science & Engineering, 18(6): 74

[8]

Chukwubuikem A , Berger C , Mady A , Rosenbaum M A . (2021). Role of phenazine-enzyme physiology for current generation in a bioelectrochemical system. Microbial Biotechnology, 14(4): 1613–1626

[9]

Demin K A , Prazdnova E V , Minkina T M , Gorovtsov A V . (2024). Sulfate-reducing bacteria unearthed: ecological functions of the diverse prokaryotic group in terrestrial environments. Applied and Environmental Microbiology, 90(4): e01390–23

[10]

Dubois T , Dancer-Thibonnier M , Monot M , Hamiot A , Bouillaut L , Soutourina O , Martin-Verstraete I , Dupuy B . (2016). Control of Clostridium difficile physiopathology in response to cysteine availability. Infection and Immunity, 84(8): 2389–2405

[11]

Ge Y H , Huang X Q , Wang S L , Zhang X H , Xu Y Q . (2004). Phenazine-1-carboxylic acid is negatively regulated and pyoluteorin positively regulated by gacA in Pseudomonas sp. M18. FEMS Microbiology Letters, 237(1): 41–47

[12]

Görke B , Stülke J . (2008). Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nature Reviews Microbiology, 6(8): 613–624

[13]

Huang J F , Xu Y Q , Zhang H Y , Li Y Q , Huang X Q , Ren B , Zhang X H . (2009). Temperature-dependent expression of phzM and its regulatory genes lasI and ptsP in rhizosphere isolate Pseudomonas sp. strain M18. Applied and Environmental Microbiology, 75(20): 6568–6580

[14]

Ishikawa K , Yamaguchi S , Tsukaoka T , Tsunoda M , Furuta K , Kaito C . (2025). Sulphur-acquisition pathways for cysteine synthesis confer a fitness advantage to bacteria in plant extracts. Environmental Microbiology, 27(6): e70126

[15]

Jiang X R , He S Z , Guo A R , Yu H J , Xu Y , Li Q Y , Xiu Z M . (2025). Electron transfer-mediated enhancement of microbial reductive dechlorination of tetrachloroethylene and its impacts on key soil biogeochemical elements. Frontiers in Soil Science, 5: 1636524

[16]

Li F , Zhang B C , Long X Z , Yu H , Shi S C , You Z X , Liu Q J , Li C , Tang R , Wu S B . et al. (2025). Dynamic synthesis and transport of phenazine-1-carboxylic acid to boost extracellular electron transfer rate. Nature Communications, 16(1): 2882

[17]

Li T , Li C Y , Liang H L , Li X X , Yang X L , Li H , Song H L . (2024a). Enhancement of stress resistance of electroactive biofilms against hypersaline shock via exogenous electron mediator addition. Chemical Engineering Journal, 499: 155905

[18]

Li X J , Li Y , Zhao X D , Weng L P , Li Y T . (2018). Cation accumulation leads to the electrode aging in soil microbial fuel cells. Journal of Soils and Sediments, 18(3): 1003–1008

[19]

Li X J , Wang X , Wan L L , Zhang Y Y , Li N , Li D S , Zhou Q X . (2016a). Enhanced biodegradation of aged petroleum hydrocarbons in soils by glucose addition in microbial fuel cells. Journal of Chemical Technology & Biotechnology, 91(1): 267–275

[20]

Li X J , Wang X , Weng L P , Zhou Q X , Li Y T . (2017). Microbial fuel cells for organic‐contaminated soil remedial applications: a review. Energy Technology, 5(8): 1156–1164

[21]

Li X J , Wang X , Zhao Q , Wan L L , Li Y T , Zhou Q X . (2016b). Carbon fiber enhanced bioelectricity generation in soil microbial fuel cells. Biosensors and Bioelectronics, 85: 135–141

[22]

Li Z H , Shao Y C , He W J , Luo Z R , Huo W Z , Ye R , Lu W J . (2024b). Insight into the co-hydrothermal humification of corn stalk and sewage sludge for enhanced nitrogen-rich humic acid production. Frontiers of Environmental Science & Engineering, 18(12): 153

[23]

Logan B E , Hamelers B , Rozendal R , Schröder U , Keller J , Freguia S , Aelterman P , Verstraete W , Rabaey K . (2006). Microbial fuel cells: methodology and technology. Environmental Science & Technology, 40(17): 5181–5192

[24]

Lomeli-Ortega C O , Sun M M , Balcázar J L . (2024). Unraveling the interaction between soil microbiomes and their potential for restoring polluted soils. Frontiers of Environmental Science & Engineering, 18(8): 104

[25]

Lovley D R , Holmes D E . (2022). Electromicrobiology: the ecophysiology of phylogenetically diverse electroactive microorganisms. Nature Reviews Microbiology, 20(1): 5–19

[26]

Ma Q X , Kuzyakov Y , Pan W K , Tang S , Chadwick D R , Wen Y , Hill P W , Macdonald A , Ge T D , Si L L . et al. (2021). Substrate control of sulphur utilisation and microbial stoichiometry in soil: results of 13C, 15N, 14C, and 35S quad labelling. The ISME Journal, 15(11): 3148–3158

[27]

Min D , Liu D F , Wu J , Cheng L , Zhang F , Cheng Z H , Li W W , Yu H Q . (2021). Extracellular electron transfer via multiple electron shuttles in waterborne Aeromonas hydrophila for bioreduction of pollutants. Biotechnology and Bioengineering, 118(2): 4760–4770

[28]

Murillo-Gelvez J , Di Toro D M , Allen H E , Carbonaro R F , Chiu P C . (2021). Reductive transformation of 3-nitro-1, 2, 4-triazol-5-one (NTO) by leonardite humic acid and anthraquinone-2, 6-disulfonate (AQDS). Environmental Science & Technology, 55(19): 12973–12983

[29]

Panis F , Kleber M , Rompel A . (2025). Bacterial tyrosinases as extracellular sources of quinone-based electron shuttles in soil. Soil Biology and Biochemistry, 210: 109903

[30]

Peng H , Pearce C I , N’Diaye A T , Zhu Z L , Ni J R , Rosso K M , Liu J . (2019). Redistribution of electron equivalents between magnetite and aqueous Fe2+ induced by a model quinone compound AQDS. Environmental Science & Technology, 53(4): 1863–1873

[31]

Pierson III L S , Pierson E A . (2010). Metabolism and function of phenazines in bacteria: impacts on the behavior of bacteria in the environment and biotechnological processes. Applied Micro-biology and Biotechnology, 86(6): 1659–1670

[32]

Rojo F . (2009). Degradation of alkanes by bacteria. Environmental Microbiology, 11(10): 2477–2490

[33]

Rushimisha I E , Ye H K , Yang S D , Yu X , Bai M H , Chen Y L , Manirakiza B , Li X J , Li Y T . (2024). Non-sealed water hastens the efficiency of microbial electrochemical remediation system. Journal of Cleaner Production, 468: 143008

[34]

Saunders S H , Tse E C M , Yates M D , Otero F J , Trammell S A , Stemp E D A , Barton J K , Tender L M , Newman D K . (2020). Extracellular DNA promotes efficient extracellular electron transfer by pyocyanin in Pseudomonas aeruginosa biofilms. Cell, 182(4): 919–932.e19

[35]

Shao G H , Dong J , Zhang W H , Sun S F , Li C L , Li Y . (2025). In situ bioelectrochemical remediation of contaminated soil and groundwater: a review. Environmental Pollution, 374: 126250

[36]

Singha L P , Kumari R , Singha K M , Pandey P , Shukla P . (2025). Synergistic co-metabolism enhancing the crude oil degradation by Acinetobacter oleivorans DR1 and its metabolic potential. Microbiology Spectrum, 13(7): e03023–24

[37]

Song K , Xiao Y L , Wang Y R , Deng M , Zhou S N , Huang Y X , Yeerken S , Li L , Wu F C . (2025). Electron shuttling promotes denitrification and mitigates nitrous oxide emissions in lakes. Nature Communications, 16(1): 8564

[38]

Sun J L , Yi X J , Yang Y W , Zhang Y , Yu X , Yang S D , Zhang X L , Han T , Peng X H , Li X J . (2025). S–Mo conversion stimulates soil electron transfer and hydrocarbon removal for nearly one year. Chemical Engineering Journal, 508: 161106

[39]

Tatiana M , Sergey K . (2025). Assessment of L-cysteine reductase activity as an indicator of soil health in different climatic zones after pollution by oil. Bulletin of Environmental Contamination and Toxicology, 114(3): 39

[40]

Thapa B S , Flynn T M , Jensvold Z D , Kemner K M , Sladek M F , O’Loughlin E J , Marshall C W . (2025). Effects of soluble electron shuttles on microbial iron reduction and methanogenesis. Applied and Environmental Microbiology, 91(5): e02222–24

[41]

Tsypin L M , Newman D K . (2021). Nitrate reduction stimulates and is stimulated by phenazine-1-carboxylic acid oxidation by Citrobacter portucalensis MBL. mBio, 12(4): e02265–21

[42]

Van der Zee F P , Cervantes F J . (2009). Impact and application of electron shuttles on the redox (bio)transformation of conta-minants: a review. Biotechnology Advances, 27(3): 256–277

[43]

Wang Y X , Ge C H , Huang Y H , Qin W X , Gu X Y , Sparks D L , Zhou D M . (2025). Oxygen-driven thiol-activated ROS generation by particulate organic matter: deciphering the role of interface-accelerated organic radical chain reaction. Water Research, 284: 123992

[44]

Wu Y D , Zhu X , Wang X X , Lin Z X , Reinfelder J R , Li F B , Liu T X . (2023). A new electron shuttling pathway mediated by lipophilic phenoxazine via the interaction with periplasmic and inner membrane proteins of Shewanella oneidensis MR-1. Environmental Science & Technology, 57(6): 2636–2646

[45]

Yang P J , Wang S , Sun T R , Jiang T , Cui Y F , Liu G L , Guo Y Y , Liu Y W , Hu L G , Shi J B . et al. (2024a). Fire-induced multiple changes in electron transfer properties of peat soil organic matter: the role of functional groups, graphitic carbon, and iron. Environmental Science & Technology, 58(46): 20457–20467

[46]

Yang S D , Wang K , Yu X , Xu Y , Ye H K , Bai M H , Zhao L X , Sun Y , Li X J , Li Y T . (2024b). Fulvic acid more facilitated the soil electron transfer than humic acid. Journal of Hazardous Materials, 469: 134080

[47]

Ye Q T , Li R , Hudson J M , Tratnyek P G , Zhu L L , Xiao J , Liu F , Shi Z Q . (2025). Linking molecular diversity to electron transfer capacity of soil dissolved organic matter: role of molecular composition and structure. Environmental Science & Technology, 59(43): 23289–23301

[48]

Yu X , Zhang X L , Yang P P , Sun J L , Yang Y W , Zhao X D , Yang G , Li P H , Li X J . (2025a). Ferrihydrite redox enhanced biodegradation of petroleum hydrocarbons coupling with conversion of soil multi-elements by electron transfer. Journal of Hazardous Materials, 496: 139341

[49]

Yu X , Zhang X L , Yang S D , Zhao X D , Wang K , Rushimisha I E , Zhou Z Y , Li X J , Li Y T . (2025b). Promoting soil management ways: bioelectrochemical technology. Resources, Environment and Sustainability, 19: 100191

[50]

Zhang B , Xiu X L , Chen L F , Sui X , Zheng R Y , Guo Y H , Cai X , Liu Z Q , Zheng Y G . (2025a). Coupling a rebuild shuttle system with biosynthetic pathway and transcription factor engineering for enhanced L-cysteine production. Green Chemistry, 27(15): 3944–3956

[51]

Zhang B P , Zhou S F , Huang X H , Tang Y C , Wang K , Yuan Y . (2025b). Simulated aging processes induced significant changes in redox properties of biochar for chromate reduction. Environmental Research, 285: 122549

[52]

Zhang J , Liu H , Zhang Y , Fu B , Zhang C , Cui M H , Wu P , Chen C J . (2023). Enhanced CO2 reduction by electron shuttle molecules via coupling different electron transport processes in microbial electrosynthesis. Fermentation, 9(7): 679

[53]

Zhang X L , Li X J , Chen X D , Sun Y , Zhao L X , Han T , Li T , Weng L P , Li Y T . (2021). A nitrogen supplement to regulate the degradation of petroleum hydrocarbons in soil microbial electrochemical remediation. Chemical Engineering Journal, 426: 131202

[54]

Zhao H Q , Yu R H , Liu J Y , Cheng H , Ding A Q , Zhang D J , Mu Y , Lu P L . (2026). Quinone structure regulates sulfide-driven reactive oxygen species generation for aquatic pollutant degradation. Water Research, 288: 124571

[55]

Zhao X D , Li X J , Li Y , Sun Y , Zhang X L , Weng L P , Ren T Z , Li Y T . (2019). Shifting interactions among bacteria, fungi and archaea enhance removal of antibiotics and antibiotic resistance genes in the soil bioelectrochemical remediation. Biotechnology for Biofuels, 12(1): 160

[56]

Zhou Z C , Tran P Q , Cowley E S , Trembath-Reichert E , Anantharaman K . (2025). Diversity and ecology of microbial sulfur metabolism. Nature Reviews Microbiology, 23: 122–140

[57]

Zhu M L , Dai X F . (2024). Shaping of microbial phenotypes by trade-offs. Nature Communications, 15(1): 4238

RIGHTS & PERMISSIONS

Higher Education Press 2026

PDF (12093KB)

Supplementary files

Supplementary materials

0

Accesses

0

Citation

Detail

Sections
Recommended

/