Transcriptional and post-transcriptional regulation of RNAi-related gene expression during plant-virus interactions

Qian Gong, Yunjing Wang, Zhenhui Jin, Yiguo Hong, Yule Liu

Stress Biology ›› 2022, Vol. 2 ›› Issue (1) : 33. DOI: 10.1007/s44154-022-00057-y
Review

Transcriptional and post-transcriptional regulation of RNAi-related gene expression during plant-virus interactions

Author information +
History +

Abstract

As sessile organisms, plants encounter diverse invasions from pathogens including viruses. To survive and thrive, plants have evolved multilayered defense mechanisms to combat virus infection. RNAi, also known as RNA silencing, is an across-kingdom innate immunity and gene regulatory machinery. Molecular framework and crucial roles of RNAi in antiviral defense have been well-characterized. However, it is largely unknown that how RNAi is transcriptionally regulated to initiate, maintain and enhance cellular silencing under normal or stress conditions. Recently, insights into the transcriptional and post-transcriptional regulation of RNAi-related genes in different physiological processes have been emerging. In this review, we integrate these new findings to provide updated views on how plants modulate RNAi machinery at the (post-) transcriptional level to respond to virus infection.

Keywords

Transcriptional regulation / RNAi / Gene expression / Virus / Plant immunity

Cite this article

Download citation ▾
Qian Gong, Yunjing Wang, Zhenhui Jin, Yiguo Hong, Yule Liu. Transcriptional and post-transcriptional regulation of RNAi-related gene expression during plant-virus interactions. Stress Biology, 2022, 2(1): 33 https://doi.org/10.1007/s44154-022-00057-y

References

[1]
AkmalM, BaigMS, KhanJA. Suppression of cotton leaf curl disease symptoms in Gossypium hirsutum through over expression of host-encoded miRNAs. J Biotechnol, 2017, 263: 21-29
CrossRef Google scholar
[2]
AlamilloJM, SaenzP, GarciaJA. Salicylic acid-mediated and RNA-silencing defense mechanisms cooperate in the restriction of systemic spread of plum pox virus in tobacco. Plant J, 2006, 48: 217-227
CrossRef Google scholar
[3]
AlazemM, LinNS. Roles of plant hormones in the regulation of host-virus interactions. Mol Plant Pathol, 2015, 16: 529-540
CrossRef Google scholar
[4]
AlazemM, HeMH, MoffettP, LinNS. Abscisic Acid Induces Resistance against Bamboo Mosaic Virus through Argonaute2 and 3. Plant Physiol, 2017, 174: 339-355
CrossRef Google scholar
[5]
Alazem M, Kim KH, Lin NS (2019) Effects of Abscisic Acid and Salicylic Acid on Gene Expression in the Antiviral RNA Silencing Pathway in Arabidopsis. Int J Mol Sci 20. https://doi.org/10.3390/ijms20102538
[6]
AllenE, HowellMD. miRNAs in the biogenesis of trans-acting siRNAs in higher plants. Semin Cell Dev Biol, 2010, 21: 798-804
CrossRef Google scholar
[7]
AllenE, XieZ, GustafsonAM, CarringtonJC. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell, 2005, 121: 207-221
CrossRef Google scholar
[8]
AshrafF, AshrafMA, HuXW, ZhangSZ. A novel computational approach to the silencing of Sugarcane Bacilliform Guadeloupe A Virus determines potential host-derived MicroRNAs in sugarcane (Saccharum officinarum L.). Peerj, 2020, 8: e8359
CrossRef Google scholar
[9]
AxtellMJ, JanC, RajagopalanR, BartelDP. A two-hit trigger for siRNA biogenesis in plants. Cell, 2006, 127: 565-577
CrossRef Google scholar
[10]
BaiM, YangGS, ChenWT, MaoZC, KangHX, ChenGH, YangYH, XieBY. Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum. Gene, 2012, 501: 52-62
CrossRef Google scholar
[11]
BaulcombeD. RNA silencing in plants. Nature, 2004, 431: 356-363
CrossRef Google scholar
[12]
BazziniAA, HoppHE, BeachyRN, AsurmendiS. Infection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant development. Proc Natl Acad Sci USA, 2007, 104: 12157-12162
CrossRef Google scholar
[13]
BazziniAA, AlmasiaNI, ManacordaCA, MongelliVC, ContiG, MaronicheGA, RodriguezMC, DistefanoAJ, HoppHE, del VasM, AsurmendiS. Virus infection elevates transcriptional activity of miR164a promoter in plants. BMC Plant Biol, 2009, 9: 152
CrossRef Google scholar
[14]
BoualemA, DogimontC, BendahmaneA. The battle for survival between viruses and their host plants. Curr Opin Virol, 2016, 17: 32-38
CrossRef Google scholar
[15]
CamposL, GranellP, TarragaS, Lopez-GresaP, ConejeroV, BellesJM, RodrigoI, LisonP. Salicylic acid and gentisic acid induce RNA silencing-related genes and plant resistance to RNA pathogens. Plant Physiol Biochem, 2014, 77: 35-43
CrossRef Google scholar
[16]
CarbonellA, DarosJA. Artificial microRNAs and synthetic trans-acting small interfering RNAs interfere with viroid infection. Mol Plant Pathol, 2017, 18: 746-753
CrossRef Google scholar
[17]
CarbonellA, LisonP, DarosJA. Multi-targeting of viral RNAs with synthetic trans-acting small interfering RNAs enhances plant antiviral resistance. Plant J, 2019, 100: 720-737
CrossRef Google scholar
[18]
CarbonellA, LopezC, DarosJA. Fast-Forward Identification of Highly Effective Artificial Small RNAs Against Different Tomato spotted wilt virus Isolates. Mol Plant-Microbe Interact, 2019, 32: 142-156
CrossRef Google scholar
[19]
CasteelCL, De AlwisM, BakA, DongHL, WhithamSA, JanderG. Disruption of Ethylene Responses by Turnip mosaic virus Mediates Suppression of Plant Defense against the Green Peach Aphid Vector. Plant Physiol, 2015, 169: 209-218
CrossRef Google scholar
[20]
ChenXM. Small RNAs and Their Roles in Plant Development. Annual Review of Cell and Dev Biol, 2009, 25: 21-44
CrossRef Google scholar
[21]
ChenLY, ChengXF, CaiJY, ZhanLL, WuXX, LiuQ, WuXY. Multiple virus resistance using artificial trans-acting siRNAs. J Virol Meth, 2016, 228: 16-20
CrossRef Google scholar
[22]
ChiniA, Gimenez-IbanezS, GoossensA, SolanoR. Redundancy and specificity in jasmonate signalling. Curr Opin Plant Biol, 2016, 33: 147-156
CrossRef Google scholar
[23]
CisnerosAE, CarbonellA. Artificial Small RNA-Based Silencing Tools for Antiviral Resistance in Plants. Plants-Basel, 2020, 9: 669
CrossRef Google scholar
[24]
CollumTD, CulverJN. The impact of phytohormones on virus infection and disease. Curr Opin Virol, 2016, 17: 25-31
CrossRef Google scholar
[25]
CollumTD, PadmanabhanMS, HsiehYC, CulverJN. Tobacco mosaic virus-directed reprogramming of auxin/indole acetic acid protein transcriptional responses enhances virus phloem loading. Proc Natl Acad Sci USA, 2016, 113: E2740-E2749
CrossRef Google scholar
[26]
DingSW. RNA-based antiviral immunity. Nat Rev Immunol, 2010, 10: 632-644
CrossRef Google scholar
[27]
DuP, WuJG, ZhangJY, ZhaoSQ, ZhengH, GaoG, WeiLP, LiY. Viral Infection Induces Expression of Novel Phased MicroRNAs from Conserved Cellular MicroRNA Precursors. Plos Pathog, 2011, 7: e1002176
CrossRef Google scholar
[28]
DuZG, XiaoDL, WuJG, JiaDS, YuanZJ, LiuY, HuLY, HanZ, WeiTY, LinQY, WuZJ, XieLH. p2 of Rice stripe virus (RSV) interacts with OsSGS3 and is a silencing suppressor. Mol Plant Pathol, 2011, 12: 808-814
CrossRef Google scholar
[29]
DuZY, ChenAZ, ChenWH, WestwoodJH, BaulcombeDC, CarrJP. Using a Viral Vector to Reveal the Role of MicroRNA159 in Disease Symptom Induction by a Severe Strain of Cucumber mosaic virus. Plant Physiol, 2014, 164: 1378-1388
CrossRef Google scholar
[30]
FangX, QiY. RNAi in Plants: An Argonaute-Centered View. Plant Cell, 2016, 28: 272-285
CrossRef Google scholar
[31]
FeiQ, XiaR, MeyersBC. Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell, 2013, 25: 2400-2415
CrossRef Google scholar
[32]
FengL, DuanCG, GuoHS. Inhibition of in vivo Slicer activity of Argonaute protein 1 by the viral 2b protein independent of its dsRNA-binding function. Mol Plant Pathol, 2013, 14: 617-622
CrossRef Google scholar
[33]
FengJL, LiuSS, WangMN, LangQL, JinCZ. Identification of microRNAs and their targets in tomato infected with Cucumber mosaic virus based on deep sequencing. Planta, 2014, 240: 1335-1352
CrossRef Google scholar
[34]
GaoRM, WanZY, WongSM. Plant Growth Retardation and Conserved miRNAs Are Correlated to Hibiscus Chlorotic Ringspot Virus Infection. Plos One, 2013, 8: e85476
CrossRef Google scholar
[35]
Garcia-RuizH, TakedaA, ChapmanEJ, SullivanCM, FahlgrenN, BrempelisKJ, CarringtonJC. Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection. Plant Cell, 2010, 22: 481-496
CrossRef Google scholar
[36]
Garcia-RuizH, CarbonellA, HoyerJS, FahlgrenN, GilbertKB, TakedaA, GiampetruzziA, Garcia RuizMT, McGinnMG, LoweryN, Martinez BaladejoMT, CarringtonJC. Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection. PLoS Pathog, 2015, 11: e1004755
CrossRef Google scholar
[37]
GuoZ, LiY, DingSW. Small RNA-based antimicrobial immunity. Nat Rev Immunol, 2019, 19: 31-44
CrossRef Google scholar
[38]
HaveldaZ, VarallyayE, ValocziA, BurgyanJ. Plant virus infection-induced persistent host gene downregulation in systemically infected leaves. Plant J, 2008, 55: 278-288
CrossRef Google scholar
[39]
HaximY, IsmayilA, JiaQ, WangY, ZhengXY, ChenTY, QianLC, LiuN, WangYJ, HanSJ, ChengJX, QiYJ, HongYG, LiuYL. Autophagy functions as an antiviral mechanism against geminiviruses in plants. Elife, 2017, 6: e23897
CrossRef Google scholar
[40]
HeXF, FangYY, FengL, GuoHS. Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica. FEBS Lett, 2008, 582: 2445-2452
CrossRef Google scholar
[41]
HeJG, DongZG, JiaZW, WangJH, WangGY. Isolation, expression and functional analysis of a putative RNA-dependent RNA polymerase gene from maize (Zea mays L.). Mol Biol Rep, 2010, 37: 865-874
CrossRef Google scholar
[42]
HuQA, HollunderJ, NiehlA, KornerCJ, GereigeD, WindelsD, ArnoldA, KuiperM, VazquezF, PoogginM, HeinleinM. Specific Impact of Tobamovirus Infection on the Arabidopsis Small RNA Profile. Plos One, 2011, 6: e19549
CrossRef Google scholar
[43]
HunterLJ, WestwoodJH, HeathG, MacaulayK, SmithAG, MacfarlaneSA, PalukaitisP, CarrJP. Regulation of RNA-dependent RNA polymerase 1 and isochorismate synthase gene expression in Arabidopsis. PLoS ONE, 2013, 8: e66530
CrossRef Google scholar
[44]
IsmayilA, YangM, LiuY. Role of autophagy during plant-virus interactions. Semin Cell Dev Biol, 2020, 101: 36-40
CrossRef Google scholar
[45]
JaubertM, BhattacharjeeS, MelloAF, PerryKL, MoffettP. ARGONAUTE2 mediates RNA-silencing antiviral defenses against Potato virus X in Arabidopsis. Plant Physiol, 2011, 156: 1556-1564
CrossRef Google scholar
[46]
JiaQ, LiuN, XieK, DaiY, HanS, ZhaoX, QianL, WangY, ZhaoJ, GorovitsR, XieD, HongY, LiuY. CLCuMuB betaC1 Subverts Ubiquitination by Interacting with NbSKP1s to Enhance Geminivirus Infection in Nicotiana benthamiana. PLoS Pathog, 2016, 12: e1005668
CrossRef Google scholar
[47]
JinY, ZhaoJH, GuoHS. Recent advances in understanding plant antiviral RNAi and viral suppressors of RNAi. Curr Opin Virol, 2021, 46: 65-72
CrossRef Google scholar
[48]
KumariR, KumarS, LeibmanD, AbebieB, ShnaiderY, DingSW, Gal-OnA. Cucumber RDR1s and cucumber mosaic virus suppressor protein 2b association directs host defence in cucumber plants. Mol Plant Pathol, 2021, 22: 1317-1331
CrossRef Google scholar
[49]
LaubingerS, ZellerG, HenzSR, BuechelS, SachsenbergT, WangJW, RatschG, WeigelD. Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proc Natl Acad Sci USA, 2010, 107: 17466-17473
CrossRef Google scholar
[50]
LeeWS, FuSF, LiZ, MurphyAM, DobsonEA, GarlandL, ChaluvadiSR, LewseyMG, NelsonRS, CarrJP. Salicylic acid treatment and expression of an RNA-dependent RNA polymerase 1 transgene inhibit lethal symptoms and meristem invasion during tobacco mosaic virus infection in Nicotiana benthamiana. BMC Plant Biol, 2016, 16: 15
CrossRef Google scholar
[51]
LeibmanD, KravchikM, WolfD, HavivS, WeissbergM, OphirR, ParisHS, PalukaitisP, DingSW, GabaV, Gal-OnA. Differential expression of cucumber RNA-dependent RNA polymerase 1 genes during antiviral defence and resistance. Mol Plant Pathol, 2018, 19: 300-312
CrossRef Google scholar
[52]
Leon-KloosterzielKM, GilMA, RuijsGJ, JacobsenSE, OlszewskiNE, SchwartzSH, ZeevaartJA, KoornneefM. Isolation and characterization of abscisic acid-deficient Arabidopsis mutants at two new loci. Plant J, 1996, 10: 655-661
CrossRef Google scholar
[53]
LiF, WangA. RNA-Targeted Antiviral Immunity: More Than Just RNA Silencing. Trends Microbiol, 2019, 27: 792-805
CrossRef Google scholar
[54]
LiF, PignattaD, BendixC, BrunkardJO, CohnMM, TungJ, SunH, KumarP, BakerB. MicroRNA regulation of plant innate immune receptors. Proc Natl Acad Sci U S A, 2012, 109: 1790-1795
CrossRef Google scholar
[55]
LiW, CuiX, MengZL, HuangXH, XieQ, WuH, JinHL, ZhangDB, LiangWQ. Transcriptional Regulation of Arabidopsis MIR168a and ARGONAUTE1 Homeostasis in Abscisic Acid and Abiotic Stress Responses. Plant Physiol, 2012, 158: 1279-1292
CrossRef Google scholar
[56]
LiF, HuangC, LiZ, ZhouX. Suppression of RNA silencing by a plant DNA virus satellite requires a host calmodulin-like protein to repress RDR6 expression. PLoS Pathog, 2014, 10: e1003921
CrossRef Google scholar
[57]
LiYZ, MuhammadT, WangY, ZhangDL, CrabbeMJC, LiangY. Salicylic Acid Collaborates with Gene Silencing to Tomato Defense against Tomato Yellow Leaf Curl Virus (Tylcv). Pakistan J Bot, 2018, 50: 2041-2054
[58]
LiuL, ChenX. Intercellular and systemic trafficking of RNAs in plants. Nat Plants, 2018, 4: 869-878
CrossRef Google scholar
[59]
LiuC, AxtellMJ, FedoroffNV. The helicase and RNaseIIIa domains of Arabidopsis Dicer-Like1 modulate catalytic parameters during microRNA biogenesis. Plant Physiol, 2012, 159: 748-758
CrossRef Google scholar
[60]
LiuHW, LuoLX, LiangCQ, JiangN, LiuPF, LiJQ. High-Throughput Sequencing Identifies Novel and Conserved Cucumber (Cucumis sativus L.) microRNAs in Response to Cucumber Green Mottle Mosaic Virus Infection. PLoS One, 2015, 10: e0129002
CrossRef Google scholar
[61]
LiuJY, FanHY, WangY, HanCG, WangXB, YuJL, LiDW, ZhangYL. Genome-Wide microRNA Profiling Using Oligonucleotide Microarray Reveals Regulatory Networks of microRNAs in Nicotiana benthamiana During Beet Necrotic Yellow Vein Virus Infection. Viruses-Basel, 2020, 12: 310
CrossRef Google scholar
[62]
LlaveC. Virus-derived small interfering RNAs at the core of plant-virus interactions. Trends Plant Sci, 2010, 15: 701-707
CrossRef Google scholar
[63]
Lopez-GomollonS, BaulcombeDC. Roles of RNA silencing in viral and non-viral plant immunity and in the crosstalk between disease resistance systems. Nat Rev Mol Cell Biol, 2022
CrossRef Google scholar
[64]
LuC, FedoroffN. A mutation in the arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin. Plant Cell, 2000, 12: 2351-2365
CrossRef Google scholar
[65]
MatzkeMA, MosherRA. RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat Rev Genet, 2014, 15: 394-408
CrossRef Google scholar
[66]
MengC, ChenJ, DingSW, PengJ, WongSM. Hibiscus chlorotic ringspot virus coat protein inhibits trans-acting small interfering RNA biogenesis in Arabidopsis. J Gen Virol, 2008, 89: 2349-2358
CrossRef Google scholar
[67]
MiaoS, LiangCQ, LiJQ, BakerB, LuoLX. Polycistronic Artificial microRNA-Mediated Resistance to Cucumber Green Mottle Mosaic Virus in Cucumber. Int J Mol Sci, 2021, 22: 12237
CrossRef Google scholar
[68]
MlotshwaS, PrussGJ, VanceV. Small RNAs in viral infection and host defense. Trends Plant Sci, 2008, 13: 375-382
CrossRef Google scholar
[69]
NaqviAR, HaqQMR, MukherjeeSK. MicroRNA profiling of tomato leaf curl new delhi virus (tolcndv) infected tomato leaves indicates that deregulation of mir159/319 and mir172 might be linked with leaf curl disease. Virol J, 2010, 7: 281
CrossRef Google scholar
[70]
OkanoY, SenshuH, HashimotoM, NeriyaY, NetsuO, MinatoN, YoshidaT, MaejimaK, OshimaK, KomatsuK, YamajiY, NambaS. In Planta Recognition of a Double-Stranded RNA Synthesis Protein Complex by a Potexviral RNA Silencing Suppressor. Plant Cell, 2014, 26: 2168-2183
CrossRef Google scholar
[71]
PachecoR, Garcia-MarcosA, BarajasD, MartianezJ, TenlladoF. PVX-potyvirus synergistic infections differentially alter microRNA accumulation in Nicotiana benthamiana. Virus Res, 2012, 165: 231-235
CrossRef Google scholar
[72]
PalauquiJC, BalzergueS. Activation of systemic acquired silencing by localised introduction of DNA. Curr Biol, 1999, 9: 59-66
CrossRef Google scholar
[73]
PelaezP, SanchezF. Small RNAs in plant defense responses during viral and bacterial interactions: similarities and differences. Front Plant Sci, 2013, 4: 343
CrossRef Google scholar
[74]
PengC, ZhangA, WangQ, SongY, ZhangM, DingX, LiY, GengQ, ZhuC. Ultrahigh-activity immune inducer from Endophytic Fungi induces tobacco resistance to virus by SA pathway and RNA silencing. BMC Plant Biol, 2020, 20: 169
CrossRef Google scholar
[75]
PeragineA, YoshikawaM, WuG, AlbrechtHL, PoethigRS. SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev, 2004, 18: 2368-2379
CrossRef Google scholar
[76]
PetersL, MeisterG. Argonaute proteins: mediators of RNA silencing. Mol Cell, 2007, 26: 611-623
CrossRef Google scholar
[77]
Qin L, Mo N, Muhammad T, Liang Y (2018) Genome-Wide Analysis of DCL, AGO, and RDR Gene Families in Pepper (Capsicum Annuum L.). Int J Mol Sci 19. https://doi.org/10.3390/ijms19041038
[78]
RajaP, SanvilleBC, BuchmannRC, BisaroDM. Viral genome methylation as an epigenetic defense against geminiviruses. J Virol, 2008, 82: 8997-9007
CrossRef Google scholar
[79]
RajagopalanR, VaucheretH, TrejoJ, BartelDP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev, 2006, 20: 3407-3425
CrossRef Google scholar
[80]
RakhshandehrooF, TakeshitaM, SquiresJ, PalukaitisP. The influence of RNA-dependent RNA polymerase 1 on potato virus Y infection and on other antiviral response genes. Mol Plant Microbe Interact, 2009, 22: 1312-1318
CrossRef Google scholar
[81]
RakhshandehrooF, RezaeeS, PalukaitisP. Silencing the tobacco gene for RNA-dependent RNA polymerase 1 and infection by potato virus Y cause remodeling of cellular organelles. Virology, 2017, 510: 127-136
CrossRef Google scholar
[82]
SatohK, KondohH, SasayaT, ShimizuT, ChoiIR, OmuraT, KikuchiS. Selective modification of rice (Oryza sativa) gene expression by rice stripe virus infection. J Gen Virol, 2010, 91: 294-305
CrossRef Google scholar
[83]
ShenM, XuY, JiaR, ZhouXP, YeKQ. Size-Independent and Noncooperative Recognition of dsRNA by the Rice Stripe Virus RNA Silencing Suppressor NS3. J Mol Biol, 2010, 404: 665-679
CrossRef Google scholar
[84]
ShineMB, ZhangK, LiuH, LimGH, XiaF, YuK, HuntAG, KachrooA, KachrooP. Phased small RNA-mediated systemic signaling in plants. Sci Adv, 2022, 8: eabm8791
CrossRef Google scholar
[85]
ShivaprasadPV, RajeswaranR, BlevinsT, SchoelzJ, MeinsF, HohnT, PoogginMM. The CaMV transactivator/viroplasmin interferes with RDR6-dependent trans-acting and secondary siRNA pathways in Arabidopsis. Nucleic Acids Res, 2008, 36: 5896-5909
CrossRef Google scholar
[86]
ShivaprasadPV, ChenHM, PatelK, BondDM, SantosBA, BaulcombeDC. A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell, 2012, 24: 859-874
CrossRef Google scholar
[87]
Shweta AkhterY, KhanJA. Genome wide identification of cotton (Gossypium hirsutum)-encoded microRNA targets against Cotton leaf curl Burewala virus. Gene, 2018, 638: 60-65
CrossRef Google scholar
[88]
SilvaTF, RomanelEAC, AndradeRRS, FarinelliL, OsterasM, DeluenC, CorreaRL, SchragoCEG, VaslinMFS. Profile of small interfering RNAs from cotton plants infected with the polerovirus Cotton leafroll dwarf virus. BMC Mol Biol, 2011, 12: 40
CrossRef Google scholar
[89]
SinghA, TanejaJ, DasguptaI, MukherjeeSK. Development of plants resistant to tomato geminiviruses using artificial trans-acting small interfering RNA. Mol Plant Pathol, 2015, 16: 724-734
CrossRef Google scholar
[90]
SongJJ, SmithSK, HannonGJ, Joshua-TorL. Crystal structure of Argonaute and its implications for RISC slicer activity. Science, 2004, 305: 1434-1437
CrossRef Google scholar
[91]
SongL, AxtellMJ, FedoroffNV. RNA secondary structural determinants of miRNA precursor processing in Arabidopsis. Curr Biol, 2010, 20: 37-41
CrossRef Google scholar
[92]
SoosaarJL, Burch-SmithTM, Dinesh-KumarSP. Mechanisms of plant resistance to viruses. Nat Rev Microbiol, 2005, 3: 789-798
CrossRef Google scholar
[93]
Stepien A, Knop K, Dolata J, Taube M, Bajczyk M, Barciszewska-Pacak M, Pacak A, Jarmolowski A, Szweykowska-Kulinska Z (2017) Posttranscriptional coordination of splicing and miRNA biogenesis in plants. Wiley Interdiscip Rev RNA 8. https://doi.org/10.1002/wrna.1403
[94]
SunZT, HeYQ, LiJM, WangX, ChenJP. Genome-Wide Characterization of Rice Black Streaked Dwarf Virus-Responsive MicroRNAs in Rice Leaves and Roots by Small RNA and Degradome Sequencing. Plant and Cell Physiol, 2015, 56: 688-699
CrossRef Google scholar
[95]
TaoT, ZhouCJ, WangQ, ChenXR, SunQ, ZhaoTY, YeJC, WangY, ZhangZY, ZhangYL, GuoZJ, WangXB, LiDW, YuJL, HanCG. Rice black streaked dwarf virus P7–2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway. Plos One, 2017, 12: e0177518
CrossRef Google scholar
[96]
TongAZ, YuanQ, WangS, PengJJ, LuYW, ZhengHY, LinL, ChenHR, GongYF, ChenJP, YanF. Altered accumulation of osa-miR171b contributes to rice stripe virus infection by regulating disease symptoms. J Exp Bot, 2017, 68: 4357-4367
CrossRef Google scholar
[97]
TongX, LiuSY, ZouJZ, ZhaoJJ, ZhuFF, ChaiLX, WangY, HanC, WangXB. A small peptide inhibits siRNA amplification in plants by mediating autophagic degradation of SGS3/RDR6 bodies. EMBO J., 2021, 40: e108050
CrossRef Google scholar
[98]
VarallyayE, ValocziA, AgyiA, BurgyanJ, HaveldaZ. Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation. EMBO J, 2010, 29: 3507-3519
CrossRef Google scholar
[99]
Vargas-Salinas M, Medina-Hernandez D, Arcos-Ortega GF, Luis-Villasenor IE, Holguin-Pena RJ (2021) RNAi activation with homologous and heterologous sequences that induce resistance against the begomovirus Pepper golden mosaic virus (PepGMV). 3 Biotech 11: 114. https://doi.org/10.1007/s13205-021-02653-7
[100]
VaucheretH. Plant ARGONAUTES. Trends Plant Sci, 2008, 13: 350-358
CrossRef Google scholar
[101]
VaucheretH, VazquezF, CreteP, BartelDP. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev, 2004, 18: 1187-1197
CrossRef Google scholar
[102]
VazquezF, VaucheretH, RajagopalanR, LepersC, GasciolliV, MalloryAC, HilbertJL, BartelDP, CreteP. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol Cell, 2004, 16: 69-79
CrossRef Google scholar
[103]
VoinnetO, VainP, AngellS, BaulcombeDC. Systemic spread of sequence-specific transgene RNA degradation in plants is initiated by localized introduction of ectopic promoterless DNA. Cell, 1998, 95: 177-187
CrossRef Google scholar
[104]
WangXB, WuQ, ItoT, CilloF, LiWX, ChenX, YuJL, DingSW. RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc Natl Acad Sci USA, 2010, 107: 484-489
CrossRef Google scholar
[105]
WangXB, JovelJ, UdompornP, WangY, WuQ, LiWX, GasciolliV, VaucheretH, DingSW. The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell, 2011, 23: 1625-1638
CrossRef Google scholar
[106]
WangZ, JiangDH, ZhangCW, TanHW, LiYX, LvSW, HouXL, CuiXY. Genome-wide identification of turnip mosaic virus-responsive microRNAs in non-heading Chinese cabbage by high-throughput sequencing. Gene, 2015, 571: 178-187
CrossRef Google scholar
[107]
WangHC, JiaoXM, KongXY, HameraS, WuY, ChenXY, FangRX, YanYS. A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway. Plant Physiol, 2016, 170: 2365-2377
CrossRef Google scholar
[108]
WangY, GongQ, WuY, HuangF, IsmayilA, ZhangD, LiH, GuH, LudmanM, FatyolK, QiY, YoshiokaK, Hanley-BowdoinL, HongY, LiuY. A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants. Cell Host Microbe, 2021, 29(1393–1406):e1397
CrossRef Google scholar
[109]
WangY, GongQ, JinZ, LiuY, HongY. Linking calcium and RNAi signaling in plants. Trends Plant Sci, 2022
CrossRef Google scholar
[110]
WasternackC. Action of jasmonates in plant stress responses and development–applied aspects. Biotechnol Adv, 2014, 32: 31-39
CrossRef Google scholar
[111]
WuJG, YangRX, YangZR, YaoSZ, ZhaoSS, WangY, LiPC, SongXW, JinL, ZhouT, LanY, XieLH, ZhouXP, ChuCC, QiYJ, CaoXF, LiY. ROS accumulation and antiviral defence control by microRNA528 in rice. Nature Plants, 2017, 3: 16203
CrossRef Google scholar
[112]
Wu J, Yang Z, Wang Y, Zheng L, Ye R, Ji Y, Zhao S, Ji S, Liu R, Xu L, Zheng H, Zhou Y, Zhang X, Cao X, Xie L, Wu Z, Qi Y, Li Y (2015) Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA. Elife 4. https://doi.org/10.7554/eLife.05733
[113]
XiaR, XuJ, MeyersBC. The Emergence, Evolution, and Diversification of the miR390-TAS3-ARF Pathway in Land Plants. Plant Cell, 2017, 29: 1232-1247
CrossRef Google scholar
[114]
XieZX, KasschauKD, CarringtonJC. Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol, 2003, 13: 784-789
CrossRef Google scholar
[115]
XieZ, AllenE, FahlgrenN, CalamarA, GivanSA, CarringtonJC. Expression of Arabidopsis MIRNA genes. Plant Physiol, 2005, 138: 2145-2154
CrossRef Google scholar
[116]
XuDL, MouGP, WangK, ZhouGH. MicroRNAs responding to southern rice black-streaked dwarf virus infection and their target genes associated with symptom development in rice. Virus Res, 2014, 190: 60-68
CrossRef Google scholar
[117]
YanS, DongX. Perception of the plant immune signal salicylic acid. Curr Opin Plant Biol, 2014, 20: 64-68
CrossRef Google scholar
[118]
YanC, FanM, YangM, ZhaoJP, ZhangWH, SuY, XiaoLT, DengHT, XieDX. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol Cell, 2018, 70: 136-+
CrossRef Google scholar
[119]
YangSJ, CarterSA, ColeAB, ChengNH, NelsonRS. A natural variant of a host RNA-dependent RNA polymerase is associated with increased susceptibility to viruses by Nicotiana benthamiana. Proc Natl Acad Sci USA, 2004, 101: 6297-6302
CrossRef Google scholar
[120]
YangJH, SeoHH, HanSJ, YoonEK, YangMS, LeeWS. Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells. Nucleic Acids Res, 2008, 36: 1220-1226
CrossRef Google scholar
[121]
YangZ, HuangY, YangJ, YaoS, ZhaoK, WangD, QinQ, BianZ, LiY, LanY, ZhouT, WangH, LiuC, WangW, QiY, XuZ, LiY. Jasmonate Signaling Enhances RNA Silencing and Antiviral Defense in Rice. Cell Host Microbe, 2020, 28(89–103):e108
CrossRef Google scholar
[122]
YaoSZ, YangZR, YangRX, HuangY, GuoG, KongXY, LanY, ZhouT, WangH, WangWM, CaoXF, WuJG, LiY. Transcriptional Regulation of miR528 by OsSPL9 Orchestrates Antiviral Response in Rice. Mol Plant, 2019, 12: 1114-1122
CrossRef Google scholar
[123]
YoshikawaM, PeragineA, ParkMY, PoethigRS. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev, 2005, 19: 2164-2175
CrossRef Google scholar
[124]
YuY, JiaT, ChenX. The 'how' and 'where' of plant microRNAs. New Phytol, 2017, 216: 1002-1017
CrossRef Google scholar
[125]
ZhaiJX, JeongDH, De PaoliE, ParkS, RosenBD, LiYP, GonzalezAJ, YanZ, KittoSL, GrusakMA, JacksonSA, StaceyG, CookDR, GreenPJ, SherrierDJ, MeyersBC. MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes & Dev, 2011, 25: 2540-2553
CrossRef Google scholar
[126]
ZhangXR, YuanYR, PeiY, LinSS, TuschlT, PatelDJ, ChuaNH. Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes & Dev, 2006, 20: 3255-3268
CrossRef Google scholar
[127]
ZhangJF, YuanLJ, ShaoY, DuW, YanDW, LuYT. The disturbance of small RNA pathways enhanced abscisic acid response and multiple stress responses in Arabidopsis. Plant Cell Environ, 2008, 31: 562-574
CrossRef Google scholar
[128]
ZhangC, DingZM, WuKC, YangL, LiY, YangZ, ShiS, LiuXJ, ZhaoSS, YangZR, WangY, ZhengLP, WeiJ, DuZG, ZhangAH, MiaoHQ, LiY, WuZJ, WuJG. Suppression of Jasmonic Acid-Mediated Defense by Viral-Inducible MicroRNA319 Facilitates Virus Infection in Rice. Mol Plant, 2016, 9: 1302-1314
CrossRef Google scholar
[129]
ZhangL, ZhangF, MelottoM, YaoJ, HeSY. Jasmonate signaling and manipulation by pathogens and insects. J Exp Bot, 2017, 68: 1371-1385
CrossRef Google scholar
[130]
ZhaoSS, LiY. Current understanding of the interplays between host hormones and plant viral infections. Plos Pathog, 2021, 17: e1009242
CrossRef Google scholar
[131]
ZhengLJ, ZhangC, ShiCN, YangZR, WangY, ZhouT, SunF, WangH, ZhaoSSS, QinQQ, QiaoR, DingZMM, WeiCHH, XieLHH, WuJG, LiY. Rice stripe virus NS3 protein regulates primary miRNA processing through association with the miRNA biogenesis factor OsDRB1 and facilitates virus infection in rice. Plos Pathog, 2017, 13: e1006662
CrossRef Google scholar
[132]
ZhuH, ZhouY, Castillo-GonzalezC, LuA, GeC, ZhaoYT, DuanL, LiZ, AxtellMJ, WangXJ, ZhangX. Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1. Nat Struct Mol Biol, 2013, 20: 1106-1115
CrossRef Google scholar
Funding
National Natural Science Foundation of China(31872636)

Accesses

Citations

Detail

Sections
Recommended

/