Core bacterial communities dominated Purus frumentum biomass under different green manure returning amounts in saline-alkali soil
Zhibo Zhou, Yongyong Ding, Kexin Li, Fengge Zhang
Core bacterial communities dominated Purus frumentum biomass under different green manure returning amounts in saline-alkali soil
● P. frumentum biomass could be improved by appropriating returning measures.
● P. frumentum biomass was excellent in 75% alfalfa returning amount.
● Key species of bacteria differed among the alfalfa returning amounts
● The relationship of core bacteria and their potential ecological functions are more close to biomass.
The use of green manure returning to field is a common practice in conservation tillage. However, there is limited research on how different amounts of alfalfa can affect saline-alkali soil properties, bacterial community characteristics, and subsequent productivity. In this study, five different amounts of alfalfa return were investigated to understand the biological relationships between rhizospheres soil properties, bacterial communities, potential functions, and the Purus frumentum biomass. The results showed that the biomass was highest when 75% of the alfalfa was returned to the field. This particular amount was associated with relatively low soil pH and electrical conductivity. Additionally, it increased the relative abundance of beneficial bacterial taxa in both core and non-core bacteria. Statistical analysis revealed significant differences in both core (RANOSIM = 0.871, P = 0.001) and non-core (RANOSIM = 0.947, P = 0.001) bacterial communities among the different amounts of alfalfa return based on non-metric multidimensional scaling analysis. Core bacterial taxa and their potential ecological functions were more closely related to plant biomass compared to non-core bacteria based on correlation analysis and multiple regression analysis. Therefore, our results indicate that optimizing the amount of alfalfa return can improve subsequent plant biomass. Regulating soil physicochemical properties and influencing core microbial community structure are of great significance for soil functional stability and crop productivity sustainability.
alfalfa / green manure / core bacteria / FAPROTAX / saline-alkali soil
[1] |
Akhtar, K., Wang, W.Y., Ren, G.X., Khan, A., Feng, Y.Z., Yang, G.H., 2018. Changes in soil enzymes, soil properties, and maize crop productivity under wheat straw mulching in Guanzhong, China. Soil & Tillage Research182, 94–102.
CrossRef
Google scholar
|
[2] |
Asshauer, K.P., Wemheuer, B., Daniel, R., Meinicke, P., 2015. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data. Bioinformatics (Oxford, England)31, 2882–2884.
CrossRef
Google scholar
|
[3] |
Delgado-Baquerizo, M., Oliverio, A.M., Brewer, T.E., Benavent-Gonzalez, A., Eldridge, D.J., Bardgett, R.D., Maestre, F.T., Singh, B.K., Fierer, N., 2018. A global atlas of the dominant bacteria found in soil. Science359, 320–325.
CrossRef
Google scholar
|
[4] |
Deng, J.J., Zhang, Y., Yin, Y., Zhu, X., Zhu, W.X., Zhou, Y.B., 2019. Comparison of soil bacterial community and functional characteristics following afforestation in the semi-arid areas. PeerJ7, e7141.
CrossRef
Google scholar
|
[5] |
Deng, R.J., Tang, Z., Hou, B.L., Ren, B.Z., Wang, Z.H., Zhu, C.Q., Kelly, S., Hursthouse, A., 2020. Microbial diversity in soils from antimony mining sites: geochemical control promotes species enrichment. Environmental Chemistry Letters18, 911–922.
CrossRef
Google scholar
|
[6] |
Dong, L., Wang, H., Shen, Y., Wang, L., Zhang, H., Shi, L., Lu, C., Shen, M., 2023. Straw type and returning amount affects SOC fractions and Fe/Al oxides in a rice-wheat rotation system. Applied Soil Ecology183, 104736.
CrossRef
Google scholar
|
[7] |
Fan, K., Delgado-Baquerizo, M., Guo, X., Wang, D., Zhu, Y.G., Chu, H., 2020a. Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment. ISME Journal15, 550–561.
CrossRef
Google scholar
|
[8] |
Fan, W., Wu, J.G., Ahmed, S., Hu, J., Chen, X.D., Li, X.H., Zhu, W.Y., Opoku-Kwanowaa, Y., 2020b. Short-term effects of different straw returning methods on the soil physicochemical properties and quality index in dryland farming in NE China. Sustainability (Basel)12, 2631.
CrossRef
Google scholar
|
[9] |
Forster, D., Lentendu, G., Filker, S., Dubois, E., Wilding, T.A., Stoeck, T., 2019. Improving eDNA-based protist diversity assessments using networks of amplicon sequence variants. Environmental Microbiology21, 4109–4124.
CrossRef
Google scholar
|
[10] |
Gao, G.F., Li, P.F., Zhong, J.X., Shen, Z.J., Chen, J., Li, Y.T., Isabwe, A., Zhu, X.Y., Ding, Q.S., Zhang, S., Gao, C.H., Zheng, H.L., 2019a. Spartina alterniflora invasion alters soil bacterial communities and enhances soil N2O emissions by stimulating soil denitrification in mangrove wetland. Science of the Total Environment653, 231–240.
CrossRef
Google scholar
|
[11] |
Gao, H.H., Yan, C.R., Liu, Q., Li, Z., Yang, X., Qi, R.M., 2019b. Exploring optimal soil mulching to enhance yield and water use efficiency in maize cropping in China: A meta-analysis. Agricultural Water Management225, 105741.
CrossRef
Google scholar
|
[12] |
Gao, X.Y., He, Y., Zhang, T., An, Y., Sun, C.L., Xu, H.Y., Wang, X.D., 2022. Alfalfa green manure amendment improved P use efficiency and reduced P losses from paddy fields. Nutrient Cycling in Agroecosystems123, 35–47.
CrossRef
Google scholar
|
[13] |
Gao, X.Y., Shi, D.Y., Lv, A., Wang, S.Y., Yuan, S.L., Zhou, P., An, Y., 2016. Increase phosphorus availability from the use of alfalfa (Medicago sativa L. ) green manure in rice (Oryza sativa L.) agroecosystem. Scientific Reports6, 6.
CrossRef
Google scholar
|
[14] |
Gelaye, K.K., Zehetner, F., Loiskandl, W., Klik, A., 2019. Comparison of growth of annual crops used for salinity bioremediation in the semi-arid irrigation area. Plant, Soil and Environment65, 165–171.
CrossRef
Google scholar
|
[15] |
Gweon, H.S., Bowes, M.J., Moorhouse, H.L., Oliver, A.E., Bailey, M.J., Acreman, M.C., Read, D.S., 2021. Contrasting community assembly processes structure lotic bacteria metacommunities along the river continuum. Environmental Microbiology23, 484–498.
CrossRef
Google scholar
|
[16] |
Han, S.J., Zhao, J.F., Liu, Y., Xi, L.Q., Liao, J.A., Liu, X.Y., Su, G.D., 2022. Effects of green manure planting mode on the quality of Korla fragrant pears (Pyrus sinkiangensis Yu). Frontiers in Plant Science13, 1027595.
CrossRef
Google scholar
|
[17] |
Helgason, B.L., Walley, F.L., Germida, J.J., 2009. Fungal and bacterial abundance in long‐term no‐till and intensive‐till soils of the northern great plains. Soil Science Society of America Journal73, 120–127.
CrossRef
Google scholar
|
[18] |
Huang, T., Yang, H., Huang, C.C., Ju, X.T., 2017. Effect of fertilizer N rates and straw management on yield-scaled nitrous oxide emissions in a maize-wheat double cropping system. Field Crops Research204, 1–11.
CrossRef
Google scholar
|
[19] |
Jiang, Y.L., Lei, Y.B., Yang, Y., Korpelainen, H., Niinemets, Ü., Li, C.Y., 2018. Divergent assemblage patterns and driving forces for bacterial and fungal communities along a glacier forefield chronosequence. Soil Biology & Biochemistry118, 207–216.
CrossRef
Google scholar
|
[20] |
Jiao, S., Qi, J., Jin, C., Liu, Y., Wang, Y., Pan, H., Chen, S., Liang, C., Peng, Z., Chen, B., Qian, X., Wei, G., 2022a. Core phylotypes enhance the resistance of soil microbiome to environmental changes to maintain multifunctionality in agricultural ecosystems. Global Change Biology28, 6653–6664.
CrossRef
Google scholar
|
[21] |
Jiao, S., Qi, J.J., Jin, C.J., Liu, Y., Wang, Y., Pan, H.B., Chen, S., Liang, C.L., Peng, Z.H., Chen, B.B., Qian, X., Wei, G., 2022b. Core phylotypes enhance the resistance of soil microbiome to environmental changes to maintain multifunctionality in agricultural ecosystems. Global Change Biology28, 6653–6664.
CrossRef
Google scholar
|
[22] |
Jiao, S., Xu, Y.Q., Zhang, J., Hao, X., Lu, Y.H., 2019. Core microbiota in agricultural soils and their potential associations with nutrient cycling. mSystems4, e00313–e00318.
CrossRef
Google scholar
|
[23] |
Jin, S.L., Huang, Y.Z., Dong, C.X., Bai, Y.J., Pan, H.H., Hu, Z.J., 2023. Effects of different straw returning amounts and fertilizer conditions on bacteria of rice’s different part in rare earth mining area. Scientific Reports13, 412.
CrossRef
Google scholar
|
[24] |
Khan, A., Singh, A.V., Pareek, N., Arya, P., Upadhayay, V.K., Jugran, A.K., Mishra, P.K., Goel, R., 2023. Credibility assessment of cold adaptive Pseudomonas jesenni MP1 and P. palleroniana N26 on growth, rhizosphere dynamics, nutrient status, and yield of the kidney bean cultivated in Indian Central Himalaya. Frontiers in Plant Science14, 1042053.
CrossRef
Google scholar
|
[25] |
Langille, M.G., Zaneveld, J., Caporaso, J.G., McDonald, D., Knights, D., Reyes, J.A., Clemente, J.C., Burkepile, D.E., Vega Thurber, R.L., Knight, R., Beiko, R.G., Huttenhower, C., 2013. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature Biotechnology31, 814–821.
CrossRef
Google scholar
|
[26] |
Lemanceau, P., Blouin, M., Muller, D., Moënne-Loccoz, Y., 2017. Let the core microbiota be functional. Trends in Plant Science22, 583–595.
CrossRef
Google scholar
|
[27] |
Li, F., Chen, L., Zhang, J.B., Yin, J., Huang, S.M., 2017. Bacterial community structure after long-term organic and inorganic fertilization reveals important associations between soil nutrients and specific taxa involved in nutrient transformations. Frontiers in Microbiology8, 187.
CrossRef
Google scholar
|
[28] |
Li, H., Dai, M.W., Dai, S.L., Dong, X.J., 2018. Current status and environment impact of direct straw return in China’s cropland–A review. Ecotoxicology and Environmental Safety159, 293–300.
CrossRef
Google scholar
|
[29] |
Li, H., Zhang, Y.Y., Yang, S., Wang, Z.R., Feng, X., Liu, H.Y., Jiang, Y., 2019. Variations in soil bacterial taxonomic profiles and putative functions in response to straw incorporation combined with N fertilization during the maize growing season. Agriculture, Ecosystems & Environment283, 106578.
CrossRef
Google scholar
|
[30] |
Li, Y.C., Shao, J.H., Fu, Y.S., Chen, Y., Wang, H.Z., Xu, Z., Feng, H.C., Xun, W.B., Liu, Y.P., Zhang, N., Shen, Q., Xuan, W., Zhang, R., 2022. The volatile cedrene from Trichoderma guizhouense modulates Arabidopsis root development through auxin transport and signalling. Plant, Cell & Environment45, 969–984.
CrossRef
Google scholar
|
[31] |
Liu, L., Cheng, M., Yang, L., Jin, J., Fu, M., 2022. Effects of different nitrogen applications and field return depth on the diversity and function of bacteria in returned straw in cold paddy fields. Sustainability (Basel)14, 13716.
CrossRef
Google scholar
|
[32] |
Liu, Y., Li, D., Qi, J.J., Peng, Z.H., Chen, W.M., Wei, G.H., Jiao, S., 2021. Stochastic processes shape the biogeographic variations in core bacterial communities between aerial and belowground compartments of common bean. Environmental Microbiology23, 949–964.
CrossRef
Google scholar
|
[33] |
Louca, S., Parfrey, L.W., Doebeli, M., 2016. Decoupling function and taxonomy in the global ocean microbiome. Science353, 1272–1277.
CrossRef
Google scholar
|
[34] |
Lu, X.Y., Chen, Q., Cui, X.Y., Abozeid, A., Liu, Y., Liu, J., Tang, Z.H., 2021. Comparative metabolomics of two saline-alkali tolerant plants Suaeda glauca and Puccinellia tenuiflora based on GC-MS platform. Natural Product Research35, 499–502.
CrossRef
Google scholar
|
[35] |
Merloti, L.F., Mendes, L.W., Pedrinho, A., de Souza, L.F., Ferrari, B.M., Tsai, S.M., 2019. Forest-to-agriculture conversion in Amazon drives soil microbial communities and N-cycle. Soil Biology & Biochemistry137, 107567.
CrossRef
Google scholar
|
[36] |
Meza, K., Vanek, S.J., Sueldo, Y., Olivera, E., Ccanto, R., Scurrah, M., Fonte, S.J., 2022. Grass-legume mixtures show potential to increase above- and below-ground biomass production for Andean forage-based fallows. Agronomy (Basel)12, 142.
CrossRef
Google scholar
|
[37] |
Monirifar, H., Mirmozaffari Roudsari, A., Ghassemi, S., Tavasolee, A., 2020. Harvest time and cultivar effects on growth, physiological traits, yield and quality of alfalfa in saline condition. International Journal of Plant Production14, 453–462.
CrossRef
Google scholar
|
[38] |
Olsen, S.L. Sr, 1982. Phosphorous. In: Page, A.L., Miller, R.H., Keeney, D.R., eds. Methods of Soil Analysis, Part 2. Madison: American Society of Agronomy, Inc
|
[39] |
Qin, W., Hu, C.S., Oenema, O., 2015. Soil mulching significantly enhances yields and water and nitrogen use efficiencies of maize and wheat: a meta-analysis. Scientific Reports5, 1–13.
CrossRef
Google scholar
|
[40] |
Qin, X.L., Huang, T.T., Lu, C., Dang, P.F., Zhang, M.M., Guan, X.K., Wen, P.F., Wang, T.C., Chen, Y.L., Siddique, K.H., 2021. Benefits and limitations of straw mulching and incorporation on maize yield, water use efficiency, and nitrogen use efficiency. Agricultural Water Management256, 107128.
CrossRef
Google scholar
|
[41] |
Redondo-Gómez, S., Mesa-Marín, J., Pérez-Romero, J.A., López-Jurado, J., García-López, J.V., Mariscal, V., Molina-Heredia, F.P., Pajuelo, E., Rodríguez-Llorente, I.D., Flowers, T.J., Mateos-Naranjo, E., 2021. Consortia of plant-growth-promoting rhizobacteria isolated from halophytes improve response of eight crops to soil salinization and climate change conditions. Agronomy (Basel)11, 1609.
CrossRef
Google scholar
|
[42] |
Rodriguez, P.A., Rothballer, M., Chowdhury, S.P., Nussbaumer, T., Gutjahr, C., Falter-Braun, P., 2019. Systems Biology of Plant-Microbiome Interactions. Molecular Plant12, 804–821.
CrossRef
Google scholar
|
[43] |
Sansupa, C., Wahdan, S.F.M., Hossen, S., Disayathanoowat, T., Wubet, T., Purahong, W., 2021. Can we use functional annotation of prokaryotic taxa (FAPROTAX) to assign the ecological functions of soil bacteria?. Applied Sciences (Basel, Switzerland)11, 688.
CrossRef
Google scholar
|
[44] |
Sengupta, A., Dick, W.A., 2015. Bacterial community diversity in soil under two tillage practices as determined by pyrosequencing. Microbial Ecology70, 853–859.
CrossRef
Google scholar
|
[45] |
Shade, A., Handelsman, J., 2012. Beyond the Venn diagram: the hunt for a core microbiome. Environmental Microbiology14, 4–12.
CrossRef
Google scholar
|
[46] |
Shah, G.A., Sadiq, M., Iqbal, Z., Shakoor, N., Shahid, M., Aulakh, A.M., Arthur, K., Khan, N., Ismail, I.M., Rashid, M.I., 2022. Field co-inoculation of Bradyrhizobium sp. and Pseudomonas increases nutrients uptake of Vigna radiata L. from fertilized soil. Journal of Plant Nutrition46, 1296–1313.
CrossRef
Google scholar
|
[47] |
Shi, R., 1996. Agricultural Chemistry Analyses of Soils, 2nd. Beijing: China Agricultural Press. pp.37-39
|
[48] |
Sun, L.L., Cao, M., Liu, F., Wang, Y.B., Wan, J.P., Wang, R.L., Zhou, H.K., Wang, W.Y., Xu, J., 2020. The volatile organic compounds of Floccularia luteovirens modulate plant growth and metabolism in Arabidopsis thaliana. Plant and Soil456, 207–221.
CrossRef
Google scholar
|
[49] |
Tao, Z.Q., Li, C.F., Li, J.J., Ding, Z.S., Xu, J., Sun, X.F., Zhou, P.L., Zhao, M., 2015. Tillage and straw mulching impacts on grain yield and water use efficiency of spring maize in Northern Huang-Huai-Hai Valley. Crop Journal3, 445–450.
CrossRef
Google scholar
|
[50] |
Toju, H., Peay, K.G., Yamamichi, M., Narisawa, K., Hiruma, K., Naito, K., Fukuda, S., Ushio, M., Nakaoka, S., Onoda, Y., Yoshida, K., Schlaeppi, K., Bai, Y., Sugiura, R., Ichihashi, Y., Minamisawa, K., Kiers, E.T., 2018. Core microbiomes for sustainable agroecosystems. Nature Plants4, 247–257.
CrossRef
Google scholar
|
[51] |
Varela, B.J., Lesbarreres, D., Ibanez, R., Green, D.M., 2018. Environmental and host effects on skin bacterial community composition in Panamanian frogs. Frontiers in Microbiology9, 298.
CrossRef
Google scholar
|
[52] |
Wang, C.H., Li, Y.J., Li, M., Zhang, K.F., Ma, W.J., Zheng, L., Xu, H.Y., Cui, B., Liu, R., Yang, Y., Zhong, Y., Liao, H., 2021a. Functional assembly of root-associated microbial consortia improves nutrient efficiency and yield in soybean. Journal of Integrative Plant Biology63, 1021–1035.
CrossRef
Google scholar
|
[53] |
Wang, J.J., Li, Q.Q., Xu, S., Zhao, W., Lei, Y., Song, C.H., Huang, Z.Y., 2018a. Traits-based integration of multi-species inoculants facilitates shifts of indigenous soil bacterial community. Frontiers in Microbiology9, 1692.
CrossRef
Google scholar
|
[54] |
Wang, Q., Garrity, G.M., Tiedje, J.M., Cole, J.R., 2007. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology73, 5261–5267.
CrossRef
Google scholar
|
[55] |
Wang, S., Bao, X.L., Feng, K., Deng, Y., Zhou, W.J., Shao, P.S., Zheng, T.T., Yao, F., Yang, S., Liu, S., Shi, R., Bai, Z., Xie, H., Yu, J., Zhang, Y., Zhang, Y., Sha, L., Song, Q., Liu, Y., Zhou, J., Zhang, Y., Li, H., Wang, Q., Han, X., Zhu, Y., Liang, C., 2021b. Warming-driven migration of core microbiota indicates soil property changes at continental scale. Science Bulletin66, 2025–2035.
CrossRef
Google scholar
|
[56] |
Wang, X.J., Jia, Z.K., Liang, L.Y., Zhao, Y.F., Yang, B.P., Ding, R., Wang, J.P., Nie, J.F., 2018b. Changes in soil characteristics and maize yield under straw returning system in dryland farming. Field Crops Research218, 11–17.
CrossRef
Google scholar
|
[57] |
Watanabe, F., Olsen, S., 1965. Test of an ascorbic acid method for determining phosphorus in water and NaHCO3 extracts from soil. Soil Science Society of America Journal29, 677–678.
CrossRef
Google scholar
|
[58] |
Xu, J.L., Yin, S.H., Hu, N.J., Gu, Z.H., Wang, B.J., Zhu, L.Q., 2015. Effects of annual straw returning on soil nutrients, microbial activity and yield in a rice-wheat rotation system. Chinese Journal of Applied and Environmental Biology21, 1100–1105.
|
[59] |
Xu, Y.J., Chen, Z., Li, X.Y., Tan, J., Liu, F., Wu, J.P., 2023. The mechanism of promoting rhizosphere nutrient turnover for arbuscular mycorrhizal fungi attributes to recruited functional bacterial assembly. Molecular Ecology32, 2335–2350.
CrossRef
Google scholar
|
[60] |
Yang, H.K., Wu, G., Mo, P., Chen, S.H., Wang, S., Xiao, Y., Ma, H., Wen, T., Guo, X., Fan, G., 2020a. The combined effects of maize straw mulch and no-tillage on grain yield and water and nitrogen use efficiency of dry-land winter wheat (Triticum aestivum L. ). Soil & Tillage Research197, 104485.
CrossRef
Google scholar
|
[61] |
Yang, H.S., Meng, Y., Feng, J.X., Li, Y., Zhai, S.L., Liu, J., 2020b. Direct and indirect effects of long-term ditch-buried straw return on soil bacterial community in a rice-wheat rotation system. Land Degradation & Development31, 851–867.
CrossRef
Google scholar
|
[62] |
Yang, R., Song, S.J., Chen, S.Y., Du, Z., Kong, J.Q., 2023. Adaptive evaluation of green manure rotation for a low fertility farmland system: Impacts on crop yield, soil nutrients, and soil microbial community. Catena222, 106873.
CrossRef
Google scholar
|
[63] |
Zhang, D.Q., Hui, D.F., Luo, Y.Q., Zhou, G.Y., 2008. Rates of litter decomposition in terrestrial ecosystems: global patterns and controlling factors. Journal of Plant Ecology1, 85–93.
CrossRef
Google scholar
|
[64] |
Zhang, F.G., Han, Y.Y., Shang, H., Ding, Y.Y., 2023. Effects of green manure cultivation for aboveground carbon store and returning to the field to ameliorate soil quality in saline alkali soil. Grassland Research3, 1–9.
CrossRef
Google scholar
|
[65] |
Zhang, F.G., Xu, X.X., Wang, G.L., Wu, B., Xiao, Y., 2020a. Medicago sativa and soil microbiome responses to Trichoderma as a biofertilizer in alkaline-saline soils. Applied Soil Ecology153, 103573.
CrossRef
Google scholar
|
[66] |
Zhang, L., Zhou, L.H., Wei, J.B., Xu, H.Q., Tang, Q.Y., Tang, J.W., 2020b. Integrating cover crops with chicken grazing to improve soil nitrogen in rice fields and increase economic output. Science of the Total Environment713, 135218.
CrossRef
Google scholar
|
[67] |
Zhang, S.L., Sadras, V., Chen, X.P., Zhang, F.S., 2014. Water use efficiency of dryland maize in the Loess Plateau of China in response to crop management. Field Crops Research163, 55–63.
CrossRef
Google scholar
|
[68] |
Zheng, Y.Y., Wang, J.L., Zhang, X., Lei, L., Yu, R., Yao, M.J., Han, D.J., Zeng, Q.D., Li, X.Z., 2023. Core root-associated prokaryotic community and its relationship to host traits across wheat varieties. Journal of Experimental Botany78, 2740–2753.
CrossRef
Google scholar
|
[69] |
Zhou, Z.B., Zhang, Y.J., Zhang, F.G., 2022a. Abundant and rare bacteria possess different diversity and function in crop monoculture and rotation systems across regional farmland. Soil Biology & Biochemistry171, 108742.
CrossRef
Google scholar
|
[70] |
Zhou, Z.B., Zhang, Y.J., Zhang, F.G., 2022b. Community assembly correlates with alfalfa production by mediating rhizosphere soil microbial community composition in different planting years and regimes. Plant and Soil479, 355–370.
CrossRef
Google scholar
|
/
〈 | 〉 |