Characterization of dissolved organic matter distribution in forestland and farmland of mollisol based on untargeted metabolomics

Shi Yao , Yongrong Bian , Xin Jiang , Yang Song

Soil Ecology Letters ›› 2023, Vol. 5 ›› Issue (4) : 230179

PDF (7164KB)
Soil Ecology Letters ›› 2023, Vol. 5 ›› Issue (4) : 230179 DOI: 10.1007/s42832-023-0179-1
RESEARCH ARTICLE
RESEARCH ARTICLE

Characterization of dissolved organic matter distribution in forestland and farmland of mollisol based on untargeted metabolomics

Author information +
History +
PDF (7164KB)

Abstract

● Characterization of mollisol soil DOM by untargeted metabolomics is possible.

● The polarity of the extractants determines the polarity of the extracted DOM.

● Land use patterns affect the biological functions and co-network interaction of DOM.

Mollisol soil is a major contributor to food production. Clarification of the molecular characteristics of dissolved organic matter (DOM) will contribute to the overall understanding and management of mollisol soil. However, the complexity of DOM poses a challenge to understanding its molecular characteristics. In this study, we investigated the molecular characteristics of DOM (< 1000 Da) in mollisol soils with different soil use patterns (forestland and dryland) based on untargeted metabolomics. Here, we confirmed the feasibility of untargeted metabolomics for the molecular characterization of DOM in mollisol soils. DOM in forestland is mainly derived from plant metabolites, and DOM can perform more biological functions. However, DOM in dryland has complex composition and has powerful co-occurrence network interactions due to human activities. Water has better extraction efficiency for polar DOM, while organic reagents can efficiently extract lipid-like DOM, but the polarity of the extractant has less influence on the DOM than the soil physicochemical properties. Meanwhile, 14-dihydroxyzeatin screened based on metabolomics can be used as a potential indicator for corn land. Therefore, untargeted metabolomics can be an effective method to characterize the DOM molecules of mollisol soil, which provides new insights for management of mollisol soil and sustainable agricultural development.

Graphical abstract

Keywords

dissolved organic matter / mollisol soil / metabolomics / molecular identification

Cite this article

Download citation ▾
Shi Yao, Yongrong Bian, Xin Jiang, Yang Song. Characterization of dissolved organic matter distribution in forestland and farmland of mollisol based on untargeted metabolomics. Soil Ecology Letters, 2023, 5(4): 230179 DOI:10.1007/s42832-023-0179-1

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Aimon, A., Farrugia, L.J., Clark, J.S., 2019. Synthesis of the core framework of the cornexistins by intramolecular nozaki-hiyama-kishi coupling. Molecules (Basel, Switzerland)24, 2654.

[2]

Baidoo, E.E.K., 2019. Microbial Metabolomics: A General Overview. In Baidoo, E.E.K., ed. Microbial metabolomics: Methods and Protocols Methods and Protocols. Humana New York, New York. pp. 1–8.

[3]

Bayona, L.M., de Voogd, N.J., Choi, Y.H., 2022. Metabolomics on the study of marine organisms. Metabolomics18, 17.

[4]

Bolan, N.S., Adriano, D.C., Kunhikrishnan, A., James, T., McDowell, R., Senesi, N., 2011. Dissolved organic matter: biogeochemistry, dynamics, and environmental significance in soils. Advances in Agronomy,110, 1–75.

[5]

Cai, K., Zhao, Y., Kang, Z., Wang, S., Wright, A.L., Jiang, X., 2023. Environmental pseudotargeted metabolomics: A high throughput and wide coverage method for metabolic profiling of 1000-year paddy soil chronosequences. Science of the Total Environment858, 159978.

[6]

Cheng, H., Yuan, M., Tang, L., Shen, Y., Yu, Q., Li, S., 2022. Integrated microbiology and metabolomics analysis reveal responses of soil microorganisms and metabolic functions to phosphorus fertilizer on semiarid farm. Science of the Total Environment817, 152878.

[7]

Drake, T.W., Van Oost, K., Barthel, M., Bauters, M., Hoyt, A.M., Podgorski, D.C., Six, J., Boeckx, P., Trumbore, S.E., Ntaboba, L.C., Spencer, R.G.M., 2019. Mobilization of aged and biolabile soil carbon by tropical deforestation. Nature Geoscience12, 541–546.

[8]

Filep, T., Draskovits, E., Szabo, J., Koos, S., Laszlo, P., Szalai, Z., 2015. The dissolved organic matter as a potential soil quality indicator in arable soils of hungary. Environmental Monitoring and Assessment187, 479.

[9]

Filep, T., Rekasi, M., 2011. Factors controlling dissolved organic carbon (DOC), dissolved organic nitrogen (DON) and DOC/DON ratio in arable soils based on a dataset from Hungary. Geoderma162, 312–318.

[10]

Gu, Z., Xie, Y., Gao, Y., Ren, X., Cheng, C., Wang, S., 2018. Quantitative assessment of soil productivity and predicted impacts of water erosion in the black soil region of northeastern China. Science of the Total Environment637, 706–716.

[11]

Guigue, J., Leveque, J., Mathieu, O., Schmitt-Kopplin, P., Lucio, M., Arrouays, D., Jolivet, C., Dequiedt, S., Prevost-Boure, N.C., Ranjard, L., 2015. Water-extractable organic matter linked to soil physico-chemistry and microbiology, at the regional scale. Soil Biology & Biochemistry84, 158–167.

[12]

Hu, C., Fu, B., Liu, G., Jin, T., Guo, L., 2010. Vegetation patterns influence on soil microbial biomass and functional diversity in a hilly area of the Loess Plateau, China. Journal of Soils and Sediments10, 1082–1091.

[13]

Jenkins, S., Swenson, T.L., Lau, R., Rocha, A.M., Aaring, A., Hazen, T.C., Chakraborty, R., Northen, T.R., 2017. Construction of viable soil defined media using quantitative metabolomics analysis of soil metabolites. Frontiers in Microbiology8, 2618.

[14]

Kaiser, K., Zech, W., 2000. Sorption of dissolved organic nitrogen by acid subsoil horizons and individual mineral phases. European Journal of Soil Science51, 403–411.

[15]

Katam, R., Lin, C., Grant, K., Katam, C.S., Chen, S., 2022. Advances in plant metabolomics and its applications in stress and single-cell biology. International Journal of Molecular Sciences23, 6983.

[16]

Kellerman, A.M., Dittmar, T., Kothawala, D.N., Tranvik, L.J., 2014. Chemodiversity of dissolved organic matter in lakes driven by climate and hydrology. Nature Communications5, 3804.

[17]

Lecca, P., Re, A., 2015. Detecting modules in biological networks by edge weight clustering and entropy significance. Frontiers in Genetics6, 265.

[18]

Li, X., Sun, G., Chen, S., Fang, Z., Yuan, H., Shi, Q., Zhu, Y., 2018. Molecular chemodiversity of dissolved organic matter in paddy soils. Environmental Science & Technology52, 963–971.

[19]

Li, X., Yao, S., Bian, Y., Jiang, X., Song, Y., 2020. The combination of biocharand plant roots improves soil bacterial adaptation to PAH stress: Insights from soilenzymes, microbiome, and metabolome. Journal of Hazardous Materials400, 123227.

[20]

Li, Y., Chen, Z., Chen, J., Castellano, M.J., Ye, C., Zhang, N., Miao, Y., Zheng, H., Li, J., Ding, W., 2022. Oxygen availability regulates the quality of soil dissolved organic matter by mediating microbial metabolism and iron oxidation. Global Change Biology28, 7410–7427.

[21]

Liu, H., Wu, Y., Ai, Z., Zhang, J., Zhang, C., Xue, S., Liu, G., 2019. Effects of the interaction between temperature and revegetation on the microbial degradation of soil dissolved organic matter (DOM)—a DOM incubation experiment. Geoderma337, 812–824.

[22]

Liu, X., Burras, C.L., Kravchenko, Y.S., Duran, A., Huffman, T., Morras, H., Studdert, G., Zhang, X., Cruse, R.M., Yuan, X., 2012. Overview of mollisols in the world: Distribution, land use and management. Canadian Journal of Soil Science92, 383–402.

[23]

Liu, X., Zhang, X., Wang, Y., Sui, Y., Zhang, S., Herbert, S.J., Ding, G., 2010. Soil degradation: a problem threatening the sustainable development of agriculture in Northeast China. Plant, Soil and Environment56, 87–97.

[24]

Lu, R., 1999. Analytical methods for soils and agricultural chemistry. China Agricultural Science and Technology Press, Beijing.

[25]

Makarov, M.I., Shuleva, M.S., Malysheva, T.I., Menyailo, O.V., 2013. Solubility of the labile forms of soil carbon and nitrogen in K2SO4 of different concentrations. Eurasian Soil Science46, 369–374.

[26]

Mioso, R., Marante, F.J.T., de Laguna, I.H.B., 2015. The chemical diversity of the ascomycete fungus paecilomyces variotii. Applied Biochemistry and Biotechnology177, 781–791.

[27]

Mitchell, P.J., Simpson, A.J., Soong, R., Oren, A., Chefetz, B., Simpson, M.J., 2013. Solution-state NMR investigation of the sorptive fractionation of dissolved organic matter by alkaline mineral soils. Environmental Chemistry10, 333–340.

[28]

Newman, M.E.J., 2006. Modularity and community structure in networks. Proceedings of the National Academy of Sciences of the United States of America103, 8577–8582.

[29]

Ohno, T., Parr, T.B., Gruselle, M.C.I., Fernandez, I.J., Sleighter, R.L., Hatcher, P.G., 2014. Molecular composition and biodegradability of soil organic matter: A case study comparing two new england forest types. Environmental Science & Technology48, 7229–7236.

[30]

Pan, J., Wang, J., Zhuang, S., 2022. Amino acid nitrogen trends in paddy soils under long-term rice cultivation in southeast coast of China. Catena212, 106044.

[31]

Pan, Z., Chen, Y., Zhou, M., McAllister, T.A., Guan, L., 2021. Microbial interaction-driven community differences as revealed by network analysis. Computational and Structural Biotechnology Journal19, 6000–6008.

[32]

Peng, B., Li, H., Peng, X., 2015. Functional metabolomics: from biomarker discovery to metabolome reprogramming. Protein & Cell6, 628–637.

[33]

Reddy, K.N., Bellaloui, N., Zablotowicz, R.M., 2010. Glyphosate effect on shikimate, nitrate reductase activity, yield, and seed composition in corn. Journal of Agricultural and Food Chemistry58, 3646–3650.

[34]

Roth, V.N., Lange, M., Simon, C., Hertkorn, N., Bucher, S., Goodall, T., Griffiths, R.I., Mellado-Vazquez, P.G., Mommer, L., Oram, N.J., Weigelt, A., Dittmar, T., Gleixner, G., 2019. Persistence of dissolved organic matter explained by molecular changes during its passage through soil. Nature Geoscience12, 755–761.

[35]

Schmidt, M.W.I., Torn, M.S., Abiven, S., Dittmar, T., Guggenberger, G., Janssens, I.A., Kleber, M., Koegel-Knabner, I., Lehmann, J., Manning, D.A.C., Nannipieri, P., Rasse, D.P., Weiner, S., Trumbore, S.E., 2011. Persistence of soil organic matter as an ecosystem property. Nature478, 49–56.

[36]

Seifert, A.G., Roth, V.N., Dittmar, T., Gleixner, G., Breuer, L., Houska, T., Marxsen, J., 2016. Comparing molecular composition of dissolved organic matter in soil and stream water: Influence of land use and chemical characteristics. Science of the Total Environment571, 142–152.

[37]

Sharma, P., Laor, Y., Raviv, M., Medina, S., Saadi, I., Krasnovsky, A., Vager, M., Levy, G.J., Bar-Tal, A., Borisover, M., 2017. Compositional characteristics of organic matter and its water-extractable components across a profile of organically managed soil. Geoderma286, 73–82.

[38]

Shi, Y., Delgado-Baquerizo, M., Li, Y., Yang, Y., Zhu, Y., Penuelas, J., Chu, H., 2020. Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems. Environment International142, 105869.

[39]

Swenson, T.L., Jenkins, S., Bowen, B.P., Northen, T.R., 2015. Untargeted soil metabolomics methods for analysis of extractable organic matter. Soil Biology & Biochemistry80, 189–198.

[40]

Tong, H., Simpson, A.J., Paul, E.A., Simpson, M.J., 2021. Land-use change and environmental properties alter the quantity and molecular composition of soil-derived dissolved organic matter. ACS Earth & Space Chemistry5, 1395–1406.

[41]

Turner, B.L., Fuhrer, J., Wuellner, M., Menendez, H.M., Dunn, B.H., Gates, R., 2018. Scientific case studies in land-use driven soil erosion in the central United States: Why soil potential and risk concepts should be included in the principles of soil health. International Soil and Water Conservation Research6, 63–78.

[42]

Wang, M., Liao, C., Tian, Q., Wang, D., Wu, Y., Tang, Y., Liu, F., 2020. Dissolved organic matter characteristics and important site factors in a subtropical mountain forest in central China. Forest Science66, 49–57.

[43]

Wang, S., Wang, Z., Heinonsalo, J., Zhang, Y., Liu, G., 2022b. Soil organic carbon stocks and dynamics in a mollisol region: A 1980s-2010s study. Science of the Total Environment807, 150910.

[44]

Warren, C.R., 2014. Response of osmolytes in soil to drying and rewetting. Soil Biology & Biochemistry70, 22–32.

[45]

Wildermuth, R.E., Steinborn, C., Barber, D.M., Muhlfenzl, K.S., Kendlbacher, M., Mayer, P., Wurst, K., Magauer, T., 2021. Evolution of a strategy for the total synthesis of (+)-cornexistin. Chemistry (Weinheim an der Bergstrasse, Germany)27, 12181–12189.

[46]

Wu, M., Li, P., Li, G., Petropoulos, E., Feng, Y., Li, Z., 2021. The chemodiversity of paddy soil dissolved organic matter is shaped and homogenized by bacterial communities that are orchestrated by geographic distance and fertilizations. Soil Biology & Biochemistry161, 108374.

[47]

Xue, P., Minasny, B., McBratney, A.B., 2022. Land-use affects soil microbial co-occurrence networks and their putative functions. Applied Soil Ecology169, 104184.

[48]

Zhao, X., Wu, P., Gao, X., Persaud, N., 2015. Soil quality indicators in relation to land use and topography in a small catchment on the loess plateau of China. Land Degradation & Development26, 54–61.

RIGHTS & PERMISSIONS

Higher Education Press

AI Summary AI Mindmap
PDF (7164KB)

Supplementary files

SEL-00179-OF-YS_suppl_1

1083

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/