Soil particle and moisture-related factors determine landward distribution of bacterial communities in a lateral riverside continuum of the Xilin River Basin
Jingli Yu, Jingjing Xia, Qiaoli Ma, Chi Zhang, Ji Zhao, Xininigen Tanggood, Yunfeng Yang
Soil particle and moisture-related factors determine landward distribution of bacterial communities in a lateral riverside continuum of the Xilin River Basin
• The riverbed-oxbow lake bed-floodplain-terrace continuum.
• Dominant bacteria substantially differed along the continuum.
• The highest bacterial diversity in floodplains and the lowest in terraces.
• Soil particle and moisture-related factors determine bacterial communities.
Continuous landscape components along the lateral riverside are affected by both hydrologic connectivity and disconnectivity. In recent years, anthropogenic activities and climate changes have caused wetland shrinkage and land degradation along the lateral riverside of many arid and semiarid regions. Since microorganisms are major drivers of soil biochemical cycling, it is essential to examine soil microbial communities along the lateral landscape continuum to understand their ecosystem functioning and predict future land changes. Here, we collected samples along a lateral riverbed center-riverbed edge-oxbow lake-floodplain-terrace continuum in the Xilin River Basin, Inner Mongolia, China. The floodplain had the highest microbial diversity and heterogeneity, with Bacteroidetes, β- and ©-Proteobacteria being the most abundant taxa. In contrast, the terrace had the lowest microbial diversity and heterogeneity, with Acidobacteria, Actinobacteria, Verrucomicrobia, Gemmatimonadetes, and α-Proteobacteria as the most abundant taxa. Silt particle, salinity, and moisture were the most influential factors for bacterial communities along the riverside continuum. Altogether, we demonstrate that dominant bacterial lineages, soil particles, and moisture-related factors are valuable indicators of this continuum, which can be leveraged for early prediction of drought-induced wetland shrinkage and grassland desertification.
Biogeography / Landward distribution / Lateral riverside continuum / Hydrologic connectivity and disconnectivity / Bacterial communities / Combined environmental factors
[1] |
Amoros, C., Bornette, G., 2002. Connectivity and biocomplexity in waterbodies of riverine floodplains. Freshwater Biology 47, 517–539
CrossRef
Google scholar
|
[2] |
Bai, Y.F., Li, L.H., Wang, Q.B., Zhang, L.X., Zhang, Y., Chen, Z.Z., 2000. Changes in plant species diversity and productivity along gradients of precipitation and elevation in the Xilin River Basin, Inner Mongolia. Acta Phytoecologica Sinica 24, 667–673
CrossRef
Google scholar
|
[3] |
Bracken, L.J., Wainwright, J., Ali, G.A., Tetzlaff, D., Smith, M.W., Reaney, S.M., Roy, A.G., 2013. Concepts of hydrological connectivity: research approaches, pathways and future agendas. Earth-Science Reviews 119, 17–34
CrossRef
Google scholar
|
[4] |
Cui, Y., Chun, S.J., Baek, S.H., Lee, M., Kim, Y., Lee, H.G., Ko, S.R., Hwang, S., Ahn, C.Y., Oh, H.M., 2019. The water depth-dependent co-occurrence patterns of marine bacteria in shallow and dynamic Southern Coast, Korea. Scientific Reports 9, 9176
CrossRef
Pubmed
Google scholar
|
[5] |
Daebeler, A., Bodelier, P.L., Yan, Z., Hefting, M.M., Jia, Z., Laanbroek, H.J., 2014. Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil. ISME Journal 8, 2397–2410
CrossRef
Pubmed
Google scholar
|
[6] |
Fierer, N., Jackson, R.B., 2006. The diversity and biogeography of soil bacterial communities. Proceedings of the National Academy of Sciences of the United States of America 103, 626–631
CrossRef
Pubmed
Google scholar
|
[7] |
Fierer, N., Leff, J.W., Adams, B.J., Nielsen, U.N., Bates, S.T., Lauber, C.L., Owens, S., Gilbert, J.A., Wall, D.H., Caporaso, J.G., 2012. Cross-biome metagenomic analyses of soil microbial communities and their functional attributes. Proceedings of the National Academy of Sciences of the United States of America 109, 21390–21395
CrossRef
Pubmed
Google scholar
|
[8] |
Fox, A., Ikoyi, I., Torres-Sallan, G., Lanigan, G., Schmalenberger, A., Wakelin, S., Creamer, R., 2018. The influence of aggregate size fraction and horizon position on microbial community composition. Applied Soil Ecology 127, 19–29
CrossRef
Google scholar
|
[9] |
Freitas, S., Hatosy, S., Fuhrman, J.A., Huse, S.M., Welch, D.B., Sogin, M.L., Martiny, A.C., 2012. Global distribution and diversity of marine Verrucomicrobia. ISME Journal 6, 1499–1505
CrossRef
Pubmed
Google scholar
|
[10] |
Gay, A., Cerdan, O., Mardhel, V., Desmet, M., 2016. Application of an index of sediment connectivity in a lowland area. Journal of Soils and Sediments 16, 280–293
CrossRef
Google scholar
|
[11] |
Hahn, M.W., Kasalický, V., Jezbera, J., Brandt, U., Jezberová, J., Šimek, K., 2010. Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 60, 1358–1365
CrossRef
Pubmed
Google scholar
|
[12] |
Hemkemeyer, M., Christensen, B.T., Martens, R., Tebbe, C.C., 2015. Soil particle size fractions harbour distinct microbial communities and differ in potential for microbial mineralisation of organic pollutants. Soil Biology & Biochemistry 90, 255–265
CrossRef
Google scholar
|
[13] |
Hemkemeyer, M., Dohrmann, A.B., Christensen, B.T., Tebbe, C.C., 2018. Bacterial preferences for specific soil particle size fractions revealed by community analyses. Frontiers in Microbiology 9, 149
CrossRef
Pubmed
Google scholar
|
[14] |
Huber, K.J., Overmann, J., 2018. Vicinamibacteraceae fam. nov., the first described family within the subdivision 6 Acidobacteria. International Journal of Systematic and Evolutionary Microbiology 68, 2331–2334
CrossRef
Pubmed
Google scholar
|
[15] |
Jeng, H.C., England, A.J., Bradford, H.B., 2005. Indicator organisms associated with stormwater suspended particles and estuarine sediment. Journal of Environmental Science and Health. Part A, Toxic/Hazardous Substances & Environmental Engineering 40, 779–791
CrossRef
Pubmed
Google scholar
|
[16] |
Leibowitz, S.G., Wigington, P.J. Jr, Schofield, K.A., Alexander, L.C., Vanderhoof, M.K., Golden, H.E., 2018. Connectivity of streams and wetlands to downstream waters: an integrated systems framework. Journal of the American Water Resources Association 54, 298–322
CrossRef
Pubmed
Google scholar
|
[17] |
Pasternak, Z., Al-Ashhab, A., Gatica, J., Gafny, R., Avraham, S., Minz, D., Gillor, O., Jurkevitch, E., 2013. Spatial and temporal biogeography of soil microbial communities in arid and semiarid regions. PLoS One 8, e69705
CrossRef
Pubmed
Google scholar
|
[18] |
Ranjan, K., Paula, F.S., Mueller, R.C., Jesus, Eda.C., Cenciani, K., Bohannan, B.J., Nüsslein, K., Rodrigues, J.L., 2015. Forest-to-pasture conversion increases the diversity of the phylum Verrucomicrobia in Amazon rainforest soils. Frontiers in Microbiology 6, 779
CrossRef
Pubmed
Google scholar
|
[19] |
Ranjard, L., Dequiedt, S., Chemidlin Prévost-Bouré, N., Thioulouse, J., Saby, N.P., Lelievre, M., Maron, P.A., Morin, F.E., Bispo, A., Jolivet, C., Arrouays, D., Lemanceau, P., 2013. Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity. Nature Communications 4, 1434
CrossRef
Pubmed
Google scholar
|
[20] |
Reddy, S., Shashidhar, K.S., Vinoda, K.S., Chandrashekara, C., Gowda, R.C., 2010. Effect of tank silt on physico-chemical properties of soil with fingermillet crop in eastern dry zone of Karnataka. Environment and Ecology 28, 1424–1427.
|
[21] |
Sessitsch, A., Weilharter, A., Gerzabek, M.H., Kirchmann, H., Kandeler, E., 2001. Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment. Applied and Environmental Microbiology 67, 4215–4224
CrossRef
Pubmed
Google scholar
|
[22] |
Shen, C.C., Xiong, J.B., Zhang, H.Y., Feng, Y.Z., Lin, X.G., Li, X.Y., Liang, W.J., Chu, H.Y., 2013. Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain. Soil Biology & Biochemistry 5, 204–211
CrossRef
Google scholar
|
[23] |
Shen, D., Jürgens, K., Beier, S., 2018. Experimental insights into the importance of ecologically dissimilar bacteria to community assembly along a salinity gradient. Environmental Microbiology 20, 1170–1184
CrossRef
Pubmed
Google scholar
|
[24] |
Shen, L., Yao, T., Xu, B., Wang, H., Jiao, N., Kang, S., Liu, X., Liu, Y., 2012. Variation of culturable bacteria along depth in the east rongbuk ice core, mt. everest. Geoscience Frontiers 3, 327–334
CrossRef
Google scholar
|
[25] |
Shi, Y.B., Su, C., Wang, X.L., Liu, X.L., Liang, C.Z., Zhao, L.Q., Zhang, X.Y., Minggagud, H., Feng, G., Ma, W.H., 2020. Modern climate and soil properties explain functional structure better than phylogenetic structure of plant communities in northern China. Frontiers in Ecology and Evolution 8, 531947
CrossRef
Google scholar
|
[26] |
Stempfhuber, B., Richter-Heitmann, T., Regan, K.M., Kölbl, A., Wüst, P.K., Marhan, S., Sikorski, J., Overmann, J., Friedrich, M.W., Kandeler, E., Schloter, M., 2016. Spatial interaction of archaeal ammonia-oxidizers and nitrite-oxidizing bacteria in an unfertilized grassland soil. Frontiers in Microbiology 6, 1567
CrossRef
Pubmed
Google scholar
|
[27] |
Su, Y.G., Liu, J., Zhang, B.C., Zhao, H.M., Huang, G., 2020. Habitat-specific environmental factors regulate spatial variability of soil bacterial communities in biocrusts across northern China’s drylands. Science of the Total Environment 719, 137479
CrossRef
Pubmed
Google scholar
|
[28] |
Tong, C., Wu, J., Yong, S., Yang, J., Yong, W., 2004. A landscape-scale assessment of steppe degradation in the Xilin River Basin, Inner Mongolia, China. Journal of Arid Environments 59, 133–149
CrossRef
Google scholar
|
[29] |
Vieira, S., Luckner, M., Wanner, G., Overmann, J., 2017. Luteitalea pratensis gen. nov., sp. nov. a new member of subdivision 6 Acidobacteria isolated from temperate grassland soil. International Journal of Systematic and Evolutionary Microbiology 67, 1408–1414
CrossRef
Pubmed
Google scholar
|
[30] |
Wang, L., Zheng, B., Nan, B., Hu, P., 2014. Diversity of bacterial community and detection of nirS- and nirK-encoding denitrifying bacteria in sandy intertidal sediments along Laizhou Bay of Bohai Sea, China. Marine Pollution Bulletin 88, 215–223
CrossRef
Pubmed
Google scholar
|
[31] |
Wang, P., Chen, B., Zhang, H., 2017. High throughput sequencing analysis of bacterial communities in soils of a typical Poyang Lake wetland. Acta Ecologica Sinica 5, 1650–1658
CrossRef
Google scholar
|
[32] |
Weese, J.S., Jalali, M., 2014. Evaluation of the impact of refrigeration on next generation sequencing-based assessment of the canine and feline fecal microbiota. BMC Veterinary Research 10, 230
CrossRef
Pubmed
Google scholar
|
[33] |
Wu, G., Xue, H., Liu, T., 2021. Change characteristics and trends of precipitation and average temperature in the Xilinhe River Basin from 1961 to 2016. Arid Land Geography doi:65.1103.X.20210323.1728.006.
|
[34] |
Wu, H., Jiang, D., Cai, P., Rong, X., Dai, K., Liang, W., Huang, Q., 2012. Adsorption of Pseudomonas putidaon soil particle size fractions: effects of solution chemistry and organic matter. Journal of Soils and Sediments 12, 143–149
CrossRef
Google scholar
|
[35] |
Yang, Y., Wu, L., Lin, Q., Yuan, M., Xu, D., Yu, H., Hu, Y., Duan, J., Li, X., He, Z., Xue, K., van Nostrand, J., Wang, S., Zhou, J., 2013. Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland. Global Change Biology 19, 637–648
CrossRef
Pubmed
Google scholar
|
[36] |
Zhang, K., Shi, Y., Cui, X., Yue, P., Li, K., Liu, X., Tripathi, B.M., Chu, H., 2019. Salinity is a key determinant for soil microbial communities in a desert ecosystem. mSystems 4, e00225–e18
CrossRef
Pubmed
Google scholar
|
/
〈 | 〉 |