Genetic evidence for asymmetric blocking of higher-order chromatin structure by CTCF/cohesin
Published date: 15 Dec 2019
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Yujia Lu , Jia Shou , Zhilian Jia , Yonghu Wu , Jinhuan Li , Ya Guo , Qiang Wu . Genetic evidence for asymmetric blocking of higher-order chromatin structure by CTCF/cohesin[J]. Protein & Cell, 2019 , 10(12) : 914 -920 . DOI: 10.1007/s13238-019-00656-y
1 |
Canzio D, Nwakeze CL, Horta A, Rajkumar SM, Coffey EL, Duffy EE, Duffie R, Monahan K, O’Keeffe S, Simon MD
|
2 |
Guo Y, Monahan K, Wu H, Gertz J, Varley KE, Li W, Myers RM, Maniatis T, Wu Q (2012) CTCF/cohesin-mediated DNA looping is required for protocadherin alpha promoter choice. Proc Natl Acad Sci USA 109:21081–21086
|
3 |
Guo Y, Xu Q, Canzio D, Shou J, Li J, Gorkin DU, Jung I, Wu H, Zhai Y, Tang Y
|
4 |
Huang HY, Wu Q (2016) CRISPR double cutting through the labyrinthine architecture of 3D genomes. J Genet Genomics 43:273–288
|
5 |
Jain S, Ba Z, Zhang Y, Dai HQ, Alt FW (2018) CTCF-binding elements mediate accessibility of RAG substrates during chromatin scanning. Cell 174(102–116):e114
|
6 |
Jiang Y, Loh YE, Rajarajan P, Hirayama T, Liao W, Kassim BS, Javidfar B, Hartley BJ, Kleofas L, Park RB
|
7 |
Monahan K, Rudnick ND, Kehayova PD, Pauli F, Newberry KM, Myers RM, Maniatis T (2012) Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-alpha gene expression. Proc Natl Acad Sci USA 109:9125–9130
|
8 |
Mountoufaris G, Canzio D, Nwakeze CL, Chen WV, Maniatis T (2018) Writing, reading, and translating the clustered protocadherin cell surface recognition code for neural circuit assembly. Annu Rev Cell Dev Biol 34:471–493
|
9 |
Ribich S, Tasic B, Maniatis T (2006) Identification of long-range regulatory elements in the protocadherin-alpha gene cluster. Proc Natl Acad Sci USA 103:19719–19724
|
10 |
Rowley MJ, Corces VG (2018) Organizational principles of 3D genome architecture. Nat Rev Genet 19:789–800
|
11 |
Shou J, Li J, Liu Y, Wu Q (2018) Precise and predictable CRISPR chromosomal rearrangements reveal principles of Cas9-mediated nucleotide insertion. Mol Cell 71(498–509):e494
|
12 |
Wu Q, Zhang T, Cheng JF, Kim Y, Grimwood J, Schmutz J, Dickson M, Noonan JP, Zhang MQ, Myers RM
|
13 |
Wu Q, Guo Y, Lu Y, Li J, Wu Y, Jia Z (2019) Tandem directional CTCF sites balance protocadherin promoter usage. bioRxiv. https://doi.org/10.1101/525543
|
14 |
Yin M, Wang J, Wang M, Li X, Zhang M, Wu Q, Wang Y (2017) Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites. Cell Res 27:1365–1377
|
15 |
Yokota S, Hirayama T, Hirano K, Kaneko R, Toyoda S, Kawamura Y, Hirabayashi M, Hirabayashi T, Yagi T (2011) Identification of the cluster control region for the protocadherin-beta genes located beyond the protocadherin-gamma cluster. J Biol Chem 286:31885–31895
|
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