How does a β-barrel integral membrane protein insert into the membrane?

References

1 Behrens S, Maier R, de Cock H, Schmid FX, Gross CA (2001) The SurA periplasmic PPIase lacking its parvulin domains functions in vivo and has chaperone activity. EMBO J 20:285–294

2 Bell MR, Engleka MJ, Malik A, Strickler JE (2013) To fuse or not to fuse: what is your purpose? Protein Sci 22:1466–1477

3 Bennion D, Charlson ES, Coon E, Misra R (2010) Dissection of betabarrel outer membrane protein assembly pathways through characterizing BamA POTRA 1 mutants of Escherichia coli. Mol Microbiol 77:1153–1171

4 Bergal HT, Hopkins AH, Metzner SI, Sousa MC (2016) The structure of a BamA-BamD fusion illuminates the architecture of the beta-Barrel Assembly Machine Core. Structure 24:243–251

5 Bitto E, McKay DB (2002) Crystallographic structure of SurA, a molecular chaperone that facilitates folding of outer membrane porins. Structure 10:1489–1498

6 Bohnert M, Pfanner N, van der Laan M (2015) Mitochondrial machineries for insertion of membrane proteins. Curr Opin Struct Biol 33:92–102

7 Bos MP, Robert V, Tommassen J (2007) Functioning of outer membrane protein assembly factor Omp85 requires a single POTRA domain. EMBO Rep 8:1149–1154

8 Bosch D, Voorhout W, Tommassen J (1988) Export and localization of N-terminally truncated derivatives of Escherichia coli K-12 outer membrane protein PhoE. J Biol Chem 263:9952–9957

9 Burgess NK, Dao TP, Stanley AM, Fleming KG (2008) Beta-barrel proteins that reside in the Escherichia coli outer membrane in vivo demonstrate varied folding behavior in vitro. J Biol Chem 283:26748–26758

10 Cao B, Zhao Y, Kou Y, Ni D, Zhang XC, Huang Y (2014) Structure of the nonameric bacterial amyloid secretion channel. Proc Natl Acad Sci USA 111:E5439–E5444

11 Chai Q, Ferrell B, Zhong M, Zhang X, Ye C, Wei Y (2014) Diverse sequences are functional at the C-terminus of the E. coli periplasmic chaperone SurA. Protein Eng Des Sel 27:111–116

12 Clantin B, Delattre AS, Rucktooa P, Saint N, Meli AC, Locht C, Jacob-Dubuisson F, Villeret V (2007) Structure of the membrane protein FhaC: a member of the Omp85-TpsB transporter superfamily. Science 317:957–961

13 Cymer F, von Heijne G, White SH (2014) Mechanisms of integral membrane protein insertion and folding. J Mol Biol 427:999–1022

14 de Leij L, Kingma J, Witholt B (1979) Nature of the regions involved in the insertion of newly synthesized protein into the outer membrane of Escherichia coli. Biochim Biophys Acta 553:224–234

15 Fairman JW, Noinaj N, Buchanan SK (2011) The structural biology of beta-barrel membrane proteins: a summary of recent reports. Curr Opin Struct Biol 21:523–531

16 Ferguson AD, Hofmann E, Coulton JW, Diederichs K, Welte W (1998) Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide. Science 282:2215–2220

17 Fleming KG (2015) A combined kinetic push and thermodynamic pull as driving forces for outer membrane protein sorting and folding in bacteria. Philos Trans R Soc Lond B Biol Sci 370:20150026

18 Gessmann D, Chung YH, Danoff EJ, Plummer AM, Sandlin CW, Zaccai NR, Fleming KG (2014) Outer membrane beta-barrel protein folding is physically controlled by periplasmic lipid head groups and BamA. Proc Natl Acad Sci USA 111:5878–5883

19 Goemans C, Denoncin K, Collet JF (2014) Folding mechanisms of periplasmic proteins. Biochim Biophys Acta 1843:1517–1528

20 Gogala M, Becker T, Beatrix B, Armache JP, Barrio-Garcia C, Berninghausen O, Beckmann R (2014) Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion. Nature 506:107–110

21 Gruss F, Zahringer F, Jakob RP, Burmann BM, Hiller S, Maier T (2013) The structural basis of autotransporter translocation by TamA. Nat Struct Mol Biol 20:1318–1320

22 Gu Y, Li H, Dong H, Zeng Y, Zhang Z, Paterson NG, Stansfeld PJ, Wang Z, Zhang Y, Wang W (2016) Structural basis of outer membrane protein insertion by the BAM complex. Nature 531:64–69

23 Han L, Zheng J, Wang Y, Yang X, Liu Y, Sun C, Cao B, Zhou H, Ni D, Lou J (2016) Structure of the BAM complex and its implications for biogenesis of outer-membrane proteins. Nat Struct Mol Biol 23:192–196

24 Kim S, Malinverni JC, Sliz P, Silhavy TJ, Harrison SC, Kahne D (2007) Structure and function of an essential component of the outer membrane protein assembly machine. Science 317:961–964

25 Knowles TJ, Jeeves M, Bobat S, Dancea F, McClelland D, Palmer T, Overduin M, Henderson IR (2008) Fold and function of polypeptide transport-associated domains responsible for delivering unfolded proteins to membranes. Mol Microbiol 68:1216–1227

26 Koronakis V, Sharff A, Koronakis E, Luisi B, Hughes C (2000) Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export. Nature 405:914–919

27 Kumazaki K, Chiba S, Takemoto M, Furukawa A, Nishiyama K, Sugano Y, Mori T, Dohmae N, Hirata K, Nakada-Nakura Y (2014) Structural basis of Sec-independent membrane protein insertion by YidC. Nature 509:516–520

28 Malinverni JC, Werner J, Kim S, Sklar JG, Kahne D, Misra R, Silhavy TJ (2006) YfiO stabilizes the YaeT complex and is essential for outer membrane protein assembly in Escherichia coli. Mol Microbiol 61:151–164

29 Noinaj N, Kuszak AJ, Gumbart JC, Lukacik P, Chang H, Easley NC, Lithgow T, Buchanan SK (2013) Structural insight into the biogenesis of beta-barrel membrane proteins. Nature 501:385–390

30 Noinaj N, Kuszak AJ, Balusek C, Gumbart JC, Buchanan SK (2014) Lateral opening and exit pore formation are required for BamA function. Structure 22:1055–1062

31 Noinaj N, Rollauer SE, Buchanan SK (2015) The beta-barrel membrane protein insertase machinery from Gram-negative bacteria. Curr Opin Struct Biol 31:35–42

32 Pautsch A, Schulz GE (1998) Structure of the outer membrane protein A transmembrane domain. Nat Struct Biol 5:1013–1017

33 Qiao S, Luo Q, Zhao Y, Zhang XC, Huang Y (2014) Structural basis for lipopolysaccharide insertion in the bacterial outer membrane. Nature 511:108–111

34 Robert V, Volokhina EB, Senf F, Bos MP, Van Gelder P, Tommassen J (2006) Assembly factor Omp85 recognizes its outer membrane protein substrates by a species-specific C-terminal motif. PLoS Biol 4:e377

35 Rollauer SE, Sooreshjani MA, Noinaj N, Buchanan SK (2015) Outer membrane protein biogenesis in Gram-negative bacteria. Philos Trans R Soc Lond B Biol Sci 370:20150023

36 Sklar JG, Wu T, Gronenberg LS, Malinverni JC, Kahne D, Silhavy TJ (2007a) Lipoprotein SmpA is a component of the YaeT complex that assembles outer membrane proteins in Escherichia coli. Proc Natl Acad Sci USA 104:6400–6405

37 Sklar JG, Wu T, Kahne D, Silhavy TJ (2007b) Defining the roles of the periplasmic chaperones SurA, Skp, and DegP in Escherichia coli. Genes Dev 21:2473–2484

38 Struyve M, Moons M, Tommassen J (1991) Carboxy-terminal phenylalanine is essential for the correct assembly of a bacterial outer membrane protein. J Mol Biol 218:141–148

39 Thoma J, Burmann BM, Hiller S, Muller DJ (2015) Impact of holdase chaperones Skp and SurA on the folding of beta-barrel outermembrane proteins. Nat Struct Mol Biol 22:795–802

40 Ujwal R, Cascio D, Colletier JP, Faham S, Zhang J, Toro L, Ping P, Abramson J (2008) The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating. Proc Natl Acad Sci USA 105:17742–17747

41 von Heijne G (1992) Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. J Mol Biol 225:487–494

42 Widdick DA, Dilks K, Chandra G, Bottrill A, Naldrett M, Pohlschroder M, Palmer T (2006) The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor. Proc Natl Acad Sci USA 103:17927–17932

43 Wu T, Malinverni J, Ruiz N, Kim S, Silhavy TJ, Kahne D (2005) Identification of a multicomponent complex required for outer membrane biogenesis in Escherichia coli. Cell 121:235–245

44 Xu X, Wang S, Hu YX, McKay DB (2007) The periplasmic bacterial molecular chaperone SurA adapts its structure to bind peptides in different conformations to assert a sequence preference for aromatic residues. J Mol Biol 373:367–381