Restoring the FOXO1 geroprotective pathway via seno-resistant mesenchymal progenitor cells alleviates primate epididymal aging

Huifen Lu , Linguo Cai , DongLiang Lv , Guoqiang Sun , Jinghui Lei , Taixin Ning , Zijuan Xin , Haoyan Huang , Ying Jing , Daoyuan Huang , Shuhui Sun , Shuai Ma , Weiqi Zhang , Fei Gao , Rui Chen , Yingying Qin , Weihong Song , Andy Peng Xiang , Juan Carlos Izpisua Belmonte , Guang-Hui Liu , Jing Qu , Si Wang

Protein Cell ›› 2026, Vol. 17 ›› Issue (9) : 840 -857.

PDF (14316KB)
Protein Cell ›› 2026, Vol. 17 ›› Issue (9) :840 -857. DOI: 10.1093/procel/pwag020
Research Article
Restoring the FOXO1 geroprotective pathway via seno-resistant mesenchymal progenitor cells alleviates primate epididymal aging
Author information +
History +
PDF (14316KB)

Abstract

Aging of the male reproductive system is characterized by declining fertility, with epididymal dysfunction being a critical yet poorly understood contributor. Through a multimodal analysis in non-human primates that integrated histology and transcriptomics, we delineated a coherent epididymal aging phenotype encompassing epithelial senescence, chronic inflammation, fibrosis, and functional decline. Single-nucleus transcriptomics revealed principal cells (PCs) as the predominant and most transcriptionally perturbed epithelial cell type. Within PCs, the longevity-associated transcription factor FOXO1 was markedly downregulated with age. Functional studies in human epididymal epithelial cells demonstrated that FOXO1 deficiency drives cellular senescence. Mechanistically, FOXO1 transcriptionally activates LHX1, and this axis is essential for counteracting senescence. Furthermore, intervention with senescence-resistant mesenchymal progenitor cells or their exosomes mitigated epididymal aging phenotypes and restored FOXO1 expression in vivo and in vitro. Our study establishes the FOXO1-LHX1 axis as a key protective pathway against primate epididymal aging, providing mechanistic insights and potential therapeutic targets for preserving male reproductive health.

Graphical abstract

Keywords

primate / epididymis / aging / single-nucleus transcriptomics / longevity gene / FOXO1 / cell therapy

Cite this article

Download citation ▾
Huifen Lu, Linguo Cai, DongLiang Lv, Guoqiang Sun, Jinghui Lei, Taixin Ning, Zijuan Xin, Haoyan Huang, Ying Jing, Daoyuan Huang, Shuhui Sun, Shuai Ma, Weiqi Zhang, Fei Gao, Rui Chen, Yingying Qin, Weihong Song, Andy Peng Xiang, Juan Carlos Izpisua Belmonte, Guang-Hui Liu, Jing Qu, Si Wang. Restoring the FOXO1 geroprotective pathway via seno-resistant mesenchymal progenitor cells alleviates primate epididymal aging. Protein Cell, 2026, 17 (9) : 840-857 DOI:10.1093/procel/pwag020

登录浏览全文

4963

注册一个新账户 忘记密码

Introduction

Aging profoundly impacts reproductive physiology, leading to a well-documented decline in fertility and alterations in endocrine function in both sexes (Akhigbe et al., 2025; Gunes et al., 2016; Hermann et al., 2000; Huang et al., 2025; Jiang et al., 2024; Kaufman et al., 2019; Pan et al., 2025; Tang et al., 2025). While age-related degeneration of the testes is a primary contributor to late-onset hypogonadism and male infertility, emerging evidence underscores a significant yet underappreciated role for functional decline in the extra-testicular reproductive tract (Cai et al., 2022; Gunes et al., 2016; Matsumoto, 2002; Nieschlag, 2020; Pino et al., 2020). Among these, the epididymis is particularly crucial, as it is indispensable for post-testicular sperm maturation, storage, and the acquisition of fertilizing capacity (Cornwall, 2009; Sullivan and Mieusset, 2016). Its pseudostratified epithelium, composed notably of principal cells (PCs), creates a specialized luminal microenvironment through active secretion and the maintenance of the blood-epididymis barrier (Long et al., 2024; Vinay et al., 2025). Despite its critical function, the cellular and molecular mechanisms underlying epididymal aging remain poorly characterized. A key knowledge gap is the lack of a systematic, cell-type-resolved understanding of how the tissue remodels with age, which hinders the development of strategies to mitigate male reproductive aging.

Recent advances in single-cell RNA sequencing (scRNA-seq) offer an unprecedented opportunity to decode complex tissue dynamics, including those driving aging and pathology (Aging Biomarker Consortium et al., 2023; Jing et al., 2025; Lei et al., 2025; Mao et al., 2024; Wang et al., 2020; Yang et al., 2024; Zhao et al., 2025; Zhu et al., 2023). Although scRNA-seq has been applied to characterize cellular heterogeneity in the epididymis and its response to metabolic stress (Rinaldi et al., 2020; Sárvári et al., 2021; Shi et al., 2021; Yan et al., 2024; Zhang et al., 2024), a comprehensive atlas detailing cell-type-specific transcriptional changes during physiological aging in primates is absent. Such a study is ethically and practically challenging in humans due to limited access to healthy, age-matched tissue samples. Non-human primates (NHPs), with their close phylogenetic relationship and high physiological fidelity to humans in reproductive anatomy, endocrinology, and immunology (Sun et al., 2026; van Der Horst et al., 1999; Wang et al., 2020), provide a powerful and translationally relevant model system for investigating the fundamental biology of reproductive aging.

In this study, we performed a multi-omics investigation of epididymal aging in the crab-eating macaque (Macaca fascicularis). We combined histological analysis, bulk RNA sequencing, and single-nucleus transcriptomics to construct a high-resolution phenotypic and molecular map of the aging primate epididymis. Our analysis identified cellular senescence, chronic inflammation, and fibrosis as hallmarks of epididymal aging. At the single-cell level, we discovered that PCs undergo the most pronounced transcriptional disturbance. We further identified and functionally validated the downregulation of the transcription factor FOXO1 as a key driver of PC senescence. Mechanistically, we delineate a novel pathway in which FOXO1 transcriptionally activates LHX1 to exert its geroprotective effects. Finally, we demonstrate that intervention with senescence-resistant mesenchymal progenitor cells (SRCs) or their derived exosomes can ameliorate key aging phenotypes. This work provides a foundational cellular and molecular framework for understanding epididymal aging, revealing new targets for potential interventions aimed at preserving male reproductive health.

Results

Characterization of aging-related phenotypes in the NHP epididymis

To systematically define the phenotypic landscape of epididymal aging, we employed a non-human primate (NHP) model, the crab-eating macaque (Macaca fascicularis), which recapitulates key aspects of human reproductive physiology (Jing et al., 2025; Lu et al., 2024; Wang et al., 2020). We conducted a comparative analysis using five young adults (5–6 years old; analogous to humans 18–20 years old) and five aged (16–18 years old; ∼60 human years) individuals (Fig. 1A).

Histopathological assessment revealed pronounced structural alterations in aged epididymides. Masson’s trichrome staining and decorin immunolabeling demonstrated a marked increase in interstitial collagen deposition and fibrosis across three major anatomical regions (caput, corpus, and cauda) in aged animals (Fig. 1B and 1C). This was accompanied by a widespread accumulation of cells positive for senescence markers, including senescence-associated β-galactosidase (SA-β-Gal) and the cyclin-dependent kinase inhibitor p21 (Fig. 1D and 1E). At the subcellular level, we observed a reduction in the heterochromatin marker H3K9me3 and an accumulation of protein aggregates (aggresomes), indicating concomitant loss of epigenetic stability and proteostasis (Fig. 1F and 1G). The aged epididymal microenvironment exhibited hallmarks of chronic inflammation. Immunostaining showed increased infiltration of CD45+ leukocytes and CD68+ macrophages (Figs. 1H and S1A). Consistent with an activated senescence-associated secretory phenotype (SASP), expression of the pro-inflammatory cytokine TNF-α was elevated (Fig. 1I). Furthermore, levels of IGKC—an immunoglobulin light chain recently implicated as a biomarker of tissue aging (Ma et al., 2024; Walters, 2024)—were substantially higher in aged tissues (Fig. 1J).

Functional correlates of these structural changes were evident. Sperm motility in the cauda epididymis, a direct readout of luminal microenvironment quality, was impaired in aged monkeys (Fig. 1K). Molecular analysis identified two key alterations linked to epithelial function: first, a substantial decrease in the secretion of clusterin, a PC-derived glycoprotein vital for sperm acrosomal function (Saewu et al., 2017) (Fig. 1L); and second, a marked reduction in androgen receptor (AR) expression within the epididymal epithelium of aged individuals (Fig. 1M). This diminished AR signaling was associated with a decline in Ki67-positive proliferating epithelial cells (Fig. S1B), aligning with the established role of androgen signaling in maintaining epithelial homeostasis (Hamzeh and Robaire, 2009; Kim and Breton, 2020; O’Hara et al., 2011; Yang et al., 2018).

In summary, our multimodal analysis delineates a coherent phenotype of primate epididymal aging, encompassing tissue fibrosis, epithelial senescence, inflammatory microenvironment remodeling, and functional decline, thereby providing a histological and functional foundation for subsequent mechanistic investigation.

Global transcriptional profiling of non-human primate epididymal aging

To delineate the genome-wide molecular alterations underlying epididymal aging, we performed bulk RNA sequencing (RNA-seq) on tissue samples from the three principal anatomical regions—caput, corpus, and cauda—of young and aged crab-eating macaques (Figs. 2A, S2A and S2B). Comparative transcriptomic analysis across these regions between age groups identified a total of 1,235 aging-associated differentially expressed genes (DEGs), with 335 genes upregulated and 900 genes downregulated in aged animals (Fig. 2B; Table S1).

Functional enrichment analysis of age-related DEGs revealed programmatic molecular shifts underlying primate epididymal aging. Upregulated genes were enriched in pathways related to senescence and cytokine signaling (Fig. 2B), correlating with histological hallmarks of increased immune infiltration and elevated TNF-α (Figs. 1H, 1I, and S1A). Conversely, downregulated genes mapped to processes critical for epithelial integrity and secretion—including cell-cell junctions, cilium function, and vesicle transport (Fig. 2B)—a finding that provided a molecular basis for the observed decline in secretion of key proteins like clusterin (Fig. 1L) and suggested a broad impairment of the blood-epididymis barrier and luminal microenvironment (James et al., 2020; Li et al., 2025a; Zhou et al., 2018). Thus, our bulk transcriptomic analysis links tissue degeneration to specific dysregulation of inflammatory signaling and epithelial functional pathways, underscoring that epididymal aging is characterized by a pervasive inflammatory response coupled with a functional recession.

Cell taxonomy of non-human primate epididymal aging

To resolve the cell-type-specific gene expression dynamics of epididymal aging, we established a single-nucleus transcriptomic atlas of the aging primate epididymis (Fig. 2C). After rigorous quality control and filtering, we obtained 90,715 high-quality single-nucleus transcriptomes for downstream analysis (Fig. S2C and S2D). Uniform manifold approximation and projection (UMAP) visualization segregated these transcriptomes into distinct clusters, representing the major cellular constituents of the tissue (Fig. 2C).

Using established canonical marker genes, we annotated seven major cell types: principal cell (PC; expressing AQP9, RNASE9, GPX5, CRISP1; 65.12%), clear cell (CC; ATP6V1G3, FOXI1; 0.33%), basal cell (BC; KRT5, TP63; 2.35%), stromal cell (SC; DCN, GSN, PDGFRB; 26.37%), endothelial cell (EC; PECAM1, VWF; 1.01%), macrophage (Mac; PTPRC, ITGAM, CD163; 1.90%), and T cell (T; CD3E, CD3G; 2.92%) (Figs. 2D, 2E, and S2E; Table S2). Consistent with their known role as the primary functional epithelium, PCs constituted the largest cellular compartment (James et al., 2020; Leir et al., 2020) (Fig. S2F). Functional enrichment of the top 50 marker genes for each type confirmed physiologically relevant signatures: PC markers were linked to vesicle and small molecule transport; BC markers were associated with stem cell differentiation pathway, aligning with their role in epithelial maintenance; and immune-related pathways were concentrated in macrophage and T cell clusters (Fig. 2E).

Interrogation of this atlas revealed pervasive age-related alterations in cellular identity. A widespread decrease in cell-type-specific marker gene set scores across multiple lineages indicated a drift from canonical cellular states in aged animals (Fig. S2G), a phenomenon recognized as a hallmark of tissue aging (Connolly et al., 2024; Ma et al., 2024; Yang et al., 2023). Given that increased transcriptional noise can erode clear cell identity, we quantified this noise across cell types (Angelidis et al., 2019; Martinez-Jimenez et al., 2017). This analysis showed an elevation of transcriptional noise in most cell types from aged epididymides, with PCs exhibiting the most pronounced increase (Fig. 2F).

Cell type-specific transcriptional dynamics during primate epididymal aging

To elucidate aging-associated transcriptomic alterations with cellular resolution, we performed comparative single-nucleus analysis between young and aged epididymides, identifying cell-type-specific DEGs (Fig. 2G; Table S1). Among epithelial and stromal populations, PCs, SCs, and BCs harbored the most extensive transcriptional changes with age (Fig. 2G). PCs showed 671 upregulated and 1,650 downregulated DEGs; SCs had 283 upregulated and 758 downregulated; and BCs exhibited 30 upregulated and 813 downregulated DEGs (Fig. 2G). Functional enrichment of these DEGs revealed coherent age-related alterations. Upregulated genes in aged cells were prominently associated with extracellular matrix organization, aligning with the histologically observed increase in tissue fibrosis (Fig. 2H). Notably, genes involved in calcium ion homeostasis were also upregulated, which may perturb the precisely regulated, low-calcium luminal microenvironment essential for normal sperm maturation and storage (Da Silva et al., 2007; Shum et al., 2022; Weissgerber et al., 2012). Conversely, downregulated DEGs were enriched in fundamental biological processes critical for tissue homeostasis, including cell cycle regulation (mitosis), signal transduction (phosphorylation), genomic maintenance (DNA repair), protein quality control (ubiquitin-mediated proteolysis), and epithelial structure (cilium organization) (Fig. 2H).

We next evaluated the expression of a curated panel of classical aging hallmark genes across cell types (López-Otín et al., 2013; Lu et al., 2024; Wu et al., 2025) (Table S3). PCs and SCs displayed the most pronounced alterations across pathways encompassing cellular senescence, inflammation, oxidative stress, and autophagy (Fig. 2I). Integration of bulk and single-nucleus data further underscored the central role of PCs, as this cell type contributed the largest number of genes to the overall aging transcriptomic signature (Fig. 2J), indicating that PCs undergo the most substantial transcriptional reprogramming during epididymal aging.

To uncover upstream regulators of these changes, we constructed a transcription factor (TF) regulatory network. This analysis identified several aging-dysregulated TFs: pro-inflammatory factors such as STAT1 and STAT2 were upregulated, while TFs involved in stress response and longevity, including HIF1A, FOXO1, and FOXO3, were downregulated in aged tissues (Alazawi et al., 2013; Carelock et al., 2023; Geng et al., 2023; Hwang and Lee, 2011; Li et al., 2025b; Martins et al., 2016; Zhao et al., 2022; Zheng et al., 2025) (Fig. 2K and 2L). Cell–cell communication analysis revealed a general attenuation of interaction across the aged epididymis, with specific alterations in signaling networks. Communication among PCs, BCs, ECs, and macrophages was weakened, whereas interactions involving CCs were relatively strengthened (Fig. S2H). The upregulation of the chemokine CCL11 (eotaxin-1) and its scavenger receptor ACKR4 suggests a dysregulated and potentially compensatory immune microenvironment in aged tissue (Ivanovska et al., 2020; Naser et al., 2024).

Finally, we contextualized our DEGs within broader aging and disease frameworks. Cross-referencing with the Aging Atlas database confirmed the downregulation of conserved aging/longevity-related genes like FOXO1, FOXO3, and CLOCK in the aged epididymis (Aging Atlas Consortium et al., 2021; Chen et al., 2024; Wang et al., 2025) (Fig. S2I). Integration with pathogenic gene sets from the Harmonizome database (Diamant et al., 2025) revealed that DEGs from PCs showed the greatest overlap with genes associated with various epididymal pathologies, including epididymitis and epithelial degeneration (Fig. S2J). For example, MFGE8, which was upregulated in aged PCs and linked to inflammatory responses (Das et al., 2016; Deroide et al., 2013; Last et al., 2020), was also associated with epididymitis, suggesting a direct connection between the aging transcriptome and disease susceptibility.

Age-related molecular alterations in the aged primate epididymal epithelium

The epididymal epithelium, as the primary functional unit of the organ, is central to the structural and functional decline observed with advancing age (Cornwall, 2009) (Fig. 3A). We observed pronounced functional regression in two key epithelial populations. BCs, which are postulated to serve as epithelial progenitors (Pinel et al., 2019), exhibited a marked reduction in proliferative and differentiation potential, accompanied by a loss of apical–basal polarity in aged individuals (Fig. 3B; Table S3). PC, the most abundant epithelial type and the one displaying the greatest transcriptional sensitivity to age, manifested a broad spectrum of degenerative changes. These included increased intracellular lipid accumulation, an enhanced inflammatory gene signature, and a coordinated downregulation of pathways vital for cellular homeostasis, such as protein folding and degradation, and DNA repair (Fig. 3C). To directly link transcriptional changes to functional regression, we assessed gene sets governing epithelial integrity and secretion. In aged PCs, we observed a downregulation of genes encoding core components of the apical junctional complex, including critical elements of tight junctions and adherens junctions (Fig. 3D). This transcriptional decline suggests a molecular basis for the potential compromise of the blood-epididymis barrier (Gregory and Cyr, 2014; Zhao et al., 2020). Concurrently, gene set scores associated with ciliogenesis and ciliary function, as well as vesicle-mediated secretion, were substantially lower in aged PCs (Fig. 3D). Together, these findings indicate a multidimensional functional decline in the aging epithelium, encompassing both its structural barrier properties, and its specialized secretory capacity.

To map the continuum of PC states during aging, we reconstructed a unified pseudotemporal trajectory integrating cells from young and aged epididymides. This analysis resolved seven distinct transcriptional states (Fig. 3E–G). Gene expression dynamics along the trajectory revealed a progressive downregulation of genes involved in cell cycle progression and vesicle-mediated transport, in contrast to a sustained increase in expression of gene modules dedicated to ciliary organization, lipid metabolism, and sperm maturation support (Fig. 3H). Notably, the proportion of PCs occupying specific states shifted with age. States 4 and 6, which were enriched in aged samples (Fig. 3G), were characterized by transcriptional signatures indicative of elevated reactive oxygen species, heightened immune activation, and increased apoptotic priming (Fig. 3I). This shift in cellular composition highlights a functional skewing of the aged epithelial population toward pro-inflammatory and stress-associated phenotypes.

FOXO1 serves as a geroprotective transcription factor in primate epididymal aging

To identify upstream regulators driving PC aging, we analyzed TFs governing the age-related DEGs in PCs. This analysis pinpointed FOXO1 as a core TF whose expression was downregulated in aged PCs (Fig. 4A). Immunohisto­chemical staining and Western blot analysis confirmed a pronounced reduction of FOXO1 protein in the epididymis of aged cynomolgus monkeys (Fig. 4B and 4C). Interrogation of the FOXO1 regulatory network revealed a broad downregulation of its predicted target genes in aged PCs (Fig. 4D). Functional enrichment of these downregulated targets highlighted pathways related to longevity and reproductive system development (Fig. 4E), implicating FOXO1 dysfunction in the degenerative processes associated with aging.

We next established a direct causal link between FOXO1 loss and cellular senescence using primary human epididymal PCs (hEPCs), which were validated by marker expression and clusterin secretory function (Fig. S3A and S3B). siRNA-mediated knockdown of FOXO1 precipitated a robust senescent phenotype (Fig. 4F and 4G). This was evidenced by an increase in SA-β-Gal activity (Fig. 4H), elevated levels of CDKN2A (p16) and CDKN1A (p21) (Fig. 4I and 4J), loss of the nuclear lamina component Lamin B1 and the heterochromatin marker H3K9me3 (Fig. 4K and 4L), and increased secretion of the SASP factor IL-6 (Fig. 4M). The cells’ specialized secretory function was concurrently impaired, as shown by reduced clusterin secretion (Fig. 4N). Bulk RNA-seq of FOXO1-deficient hEPCs corroborated these findings, demonstrating upregulated senescence/SASP pathways and downregulated epithelial secretion programs (Fig. 4O and 4P; Table S4).

FOXO1 counteracts cellular senescence by transactivating LHX1

To delineate the mechanistic pathway downstream of FOXO1, we intersected genes downregulated upon FOXO1 knockdown with predicted FOXO1 target genes. LHX1 emerged as the most substantially downregulated overlapping candidate (Fig. 4Q). Chromatin immunoprecipitation followed by qPCR (ChIP-qPCR) confirmed the direct binding of FOXO1 to the LHX1 promoter (Fig. 5A). A dual-luciferase reporter assay further demonstrated that FOXO1 activates the LHX1 promoter, and this transactivation was abrogated by mutation of the FOXO1 binding site (Fig. 5B). Consistent with this regulatory relationship, FOXO1 knockdown reduced both LHX1 mRNA and protein levels in hEPCs (Fig. 5C and 5D), while FOXO1 overexpression had the opposite effect (Fig. S3C and S3D). Moreover, LHX1 protein expression exhibited an age-dependent decline in cynomolgus monkey epididymis (Fig. 5E), mirroring the aging-related loss of FOXO1.

Functional studies established LHX1 as a critical downstream effector. Knockdown of LHX1 in hEPCs recapitulated the senescence phenotypes observed with FOXO1 deficiency, including increased SA-β-Gal positivity, elevated p21 expression, loss of Lamin B1 and H3K9me3, elevated IL-6 secretion, and impaired clusterin production (Figs. 5F–L and S3E). Transcriptomic analysis confirmed the upregulation of senescence and inflammatory genes upon LHX1 loss (Fig. 5M and 5N; Table S4). Crucially, overexpression of LHX1 effectively rescued the senescence phenotypes induced by FOXO1 knockdown. This was evidenced by reduced SA-β-Gal and p21 positivity, restored nuclear lamina and heterochromatin integrity, lowered IL-6 levels, and increased clusterin secretion (Figs. 5O–T and S3F–G). These results demonstrate that LHX1 acts as a key mediator of FOXO1’s geroprotective function in hEPCs.

SRC intervention alleviates epididymal aging

Building upon our previous finding that long-term infusion of SRCs attenuates systemic aging in NHPs (Lei et al., 2025), we investigated the potential of this intervention to specifically counteract epididymal aging. Employing an epididymal transcriptomic aging clock, we calculated that SRC treatment reduced the estimated biological age of the epididymis by 3.14 years in monkeys (Figs. 6A, 6B, S3H and S3I). Histological assessment confirmed a reduction of aging phenotypes in SRC-treated animals. This was characterized by a lower abundance of p21-positive senescent cells (Fig. 6C), improved heterochromatin stability as indicated by H3K9me3 levels (Fig. 6D), diminished infiltration of CD45+ immune cells, and reduced expression of the pro-inflammatory cytokine TNF-α (Figs. 6E and S3J). Notably, SRC intervention restored the age-associated downregulation of the geroprotective transcription factor FOXO1 in the epididymal epithelium (Figs. 6F and S3K).

Given the established role of exosomes in mediating the senoprotective effects of stem cells (Lei et al., 2025; Wang and Du, 2025), we next evaluated whether SRC-derived exosomes (SRC-Exo) could replicate these benefits. Repeated intravenous administration of SRC-Exo to aged mice effectively delayed epididymal aging, as shown by a reduction in p21+ senescent cells, an increase in heterochromatin marker H3K9me3, and a decrease in IgG accumulation (Fig. 6G–J). Mirroring the effects of SRC treatment in primates, SRC-Exo administration also restored FOXO1 expression in mouse epididymis (Fig. 6K). To determine if the protective effect was direct and cell-autonomous, we applied SRC-Exo to hEPCs rendered senescent by FOXO1 knockdown. SRC-Exo treatment upregulated FOXO1 expression in these cells (Figs. 6L and S3L) and effectively ameliorated the senescent phenotypes. This was demonstrated by a decrease in SA-β-Gal and p21-positive cells (Figs. 6M and S3M), improved nuclear lamina integrity (Fig. 6N), suppressed secretion of the SASP factor IL-6 (Fig. 6O), and restored production of the functional marker clusterin (Fig. 6P).

Collectively, these results demonstrate that SRC intervention mitigates epididymal aging, and that this geroprotective effect is mediated, at least in part, through the exosome-dependent restoration of FOXO1 signaling and subsequent alleviation of epithelial cell senescence.

Discussion

The age-related decline in male reproductive potential is closely linked to deficiencies in post-testicular sperm maturation, a process in which epididymal function is ­paramount. Our study provides a comprehensive, multi-dimensional dissection of primate epididymal aging, establishing epithelial senescence, chronic inflammation, and interstitial fibrosis as its defining tissue hallmarks. Through the construction of a single-nucleus transcriptomic atlas of the aging primate epididymis, we identify the functional erosion of PCs as a central event. We further delineate a molecular cascade wherein the age-associated downregulation of the longevity-linked transcription factor FOXO1 drives PC senescence, at least in part, through the diminished transcriptional activation of its downstream target LHX1. This newly identified FOXO1-LHX1 axis represents a critical protective pathway against epididymal aging, offering a mechanistic framework for understanding age-related functional decline and presenting potential targets for intervention (Fig. 6Q).

Our systematic analysis revealed a consistent accumulation of senescent cells across all epididymal regions with age. PCs, constituting the most abundant and functionally essential epithelial population, emerged as the primary senescent reservoir and exhibited the most profound transcriptional disturbance. This positions PC senescence as a likely instigator of broader tissue dysfunction. Senescent cells propagate local damage via the SASPs, releasing a milieu of inflammatory cytokines, chemokines, and proteases that recruit immune cells and promote pathological tissue remodeling, including fibrosis (Hou et al., 2023; Kale et al., 2020; Leng and Pawelec, 2022; Mebratu et al., 2023; Nelson et al., 2012; Schafer et al., 2017; Sun et al., 2022). Indeed, our observations of increased CD45+ and CD68+ cell infiltration, elevated TNF-α, and collagen deposition in the aged epididymis are congruent with this paradigm. These findings illustrate a vicious cycle wherein intrinsic epithelial senescence and the resultant adverse microenvironmental remodeling mutually reinforce each other, collectively driving tissue degeneration.

We pinpoint the downregulation of FOXO1 as a pivotal event triggering this cascade in PCs. FOXO family transcription factors are central regulators of cellular homeostasis, integrating signals to regulate stress resistance, metabolism, and longevity (Eijkelenboom and Burgering, 2013; Huang and Tindall, 2007; Jing et al., 2023; Liu et al., 2024, 2025; Martins et al., 2016). Our functional studies in human primary epididymal epithelial cells demonstrate that FOXO1 deficiency is sufficient to induce a comprehensive senescent state, characterized by cell cycle arrest, loss of nuclear and heterochromatin integrity, SASP activation, and impaired specialized secretion. Mechanistically, we establish that FOXO1 exerts its geroprotective effect, in part, by directly transcriptionally activating LHX1—a factor not previously implicated in cellular senescence. The FOXO1-LHX1 axis thus represents a novel regulatory module safeguarding epididymal epithelial health, whose disintegration with age contributes to functional decline.

Notably, our interventional studies indicate that this aging process is not irreversible. Administration of SRCs or their exosomes (termed SRC-Exo) attenuated key aging phenotypes in aged animals, and directly ameliorated senescence in human PCs. These benefits were associated with the restoration of FOXO1 expression. This suggests that the geroprotective effect of SRCs likely operates through a multimodal mechanism, involving both the direct delivery of pro-homeostatic signals (via exosomes) to epithelial cells and the amelioration of the pro-inflammatory tissue microenvironment. The specific bioactive components within SRC-Exo that mediate FOXO1 upregulation and senescent cell rejuvenation warrant further investigation.

In conclusion, by mapping the cellular and molecular landscape of the aging primate epididymis at single-nucleus resolution, this work defines the inactivation of the FOXO1-LHX1 transcriptional pathway as a key driver of epithelial senescence and tissue dysfunction. Beyond identifying a new therapeutic axis for male reproductive aging, this study provides an essential reference atlas and a mechanistic foundation for future research aimed at diagnosing, mitigating, or reversing age-related decline in epididymal function and overall reproductive health.

References

[1]

Aging Atlas Consortium. Aging Atlas: a multi-omics database for aging biology. Nucleic Acids Res 2021;49:D825–D830.

[2]

Akhigbe R, Oyedokun P, Adeogun A et al The aging male: impact of aging on male reproduction. Biogerontology 2025;26:1–22.

[3]

Alazawi W, Heath H, Waters JA et al Stat2 loss leads to cytokine-independent, cell-mediated lethality in LPS-induced sepsis. Proc Natl Acad Sci U S A 2013;110:8656–8661.

[4]

Angelidis I, Simon LM, Fernandez IE et al An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics. Nat Commun 2019;10:963.

[5]

Aging Biomarker Consortium; Bao H, Cao J et al Biomarkers of aging. Sci China Life Sci 2023;66:893–1066.

[6]

Cai Y, Song W, Li J et al The landscape of aging. Sci China Life Sci 2022;65:2354–2454.

[7]

Carelock ME, Master RP, Kim M-C et al Targeting intracellular proteins with cell type-specific functions for cancer immunotherapy. Life Med 2023;2:lnad019.

[8]

Chen Y, Xu X, Chen Z et al Circadian factors CLOCK and BMAL1 promote nonhomologous end joining and antagonize cellular senescence. Life Med 2024;3:lnae006.

[9]

Connolly E, Pan T, Aluru M et al Loss of immune cell identity with age inferred from large atlases of single cell transcriptomes. Aging Cell 2024;23:e14306.

[10]

Cornwall GA. New insights into epididymal biology and function. Hum Reprod Update 2009;15:213–227.

[11]

Da Silva N, Shum WW, El-Annan J et al Relocalization of the V-ATPase B2 subunit to the apical membrane of epididymal clear cells of mice deficient in the B1 subunit. Am J Physiol Cell Physiol 2007;293:C199–C210.

[12]

Das A, Ghatak S, Sinha M et al Correction of MFG-E8 resolves inflammation and promotes cutaneous wound healing in diabetes. J Immunol 2016;196:5089–5100.

[13]

Deroide N, Li X, Lerouet D et al MFGE8 inhibits inflammasome-induced IL-1β production and limits postischemic cerebral injury. J Clin Invest 2013;123:1176–1181.

[14]

Diamant I, Clarke DJB, Evangelista JE et al Harmonizome 3.0: integrated knowledge about genes and proteins from diverse multi-omics resources. Nucleic Acids Res 2025;53:D1016–d1028.

[15]

Eijkelenboom A, Burgering BM. FOXOs: signalling integrators for homeostasis maintenance. Nat Rev Mol Cell Biol 2013;14:83–97.

[16]

Geng L, Zhang B, Liu H et al A comparative study of metformin and nicotinamide riboside in alleviating tissue aging in rats. Life Med 2023;2:lnac045.

[17]

Gregory M, Cyr DG. The blood-epididymis barrier and inflammation. Spermatogenesis 2014;4:e979619.

[18]

Gunes S, Hekim GN, Arslan MA et al Effects of aging on the male reproductive system. J Assist Reprod Genet 2016;33:441–454.

[19]

Hamzeh M, Robaire B. Effect of testosterone on epithelial cell proliferation in the regressed rat epididymis. J Androl 2009;30:200–212.

[20]

Hermann M, Untergasser G, Rumpold H et al Aging of the male reproductive system. Exp Gerontol 2000;35:1267–1279.

[21]

Hou J, Zheng Y, Gao C. Regulation of cellular senescence by innate immunity. Biophys Rep 2023;9:338–351.

[22]

Huang H, Tindall DJ. Dynamic FoxO transcription factors. J Cell Sci 2007;120:2479–2487.

[23]

Huang Z, Wang B, Tian Y et al Iron metabolism disorder promotes postovulatory oocyte aging by inducing oxidative stress damage. Life Med 2025;4:lnaf032.

[24]

Hwang AB, Lee SJ. Regulation of life span by mitochondrial respiration: the HIF-1 and ROS connection. Aging (Albany NY) 2011;3:304–310.

[25]

Ivanovska M, Abdi Z, Murdjeva M et al CCL-11 or eotaxin-1: an immune marker for ageing and accelerated ageing in neuro-psychiatric disorders. Pharmaceuticals (Basel) 2020;13:230.

[26]

James ER, Carrell DT, Aston KI et al The role of the epididymis and the contribution of epididymosomes to mammalian reproduction. Int J Mol Sci 2020;21

[27]

Jiang W, Sun W, Peng Y et al Single-cell RNA sequencing reveals the intercellular crosstalk and the regulatory landscape of stromal cells during the whole life of the mouse ovary. Life Med 2024;3:lnae041.

[28]

Jing Y, Lu H, Li J et al Vitamin C conveys geroprotection on primate ovaries. Cell Stem Cell 2025;32:1723–1740.e9.

[29]

Jing Y, Zuo Y, Yu Y et al Single-nucleus profiling unveils a geroprotective role of the FOXO3 in primate skeletal muscle aging. Protein Cell 2023;14:497–512.

[30]

Kale A, Sharma A, Stolzing A et al Role of immune cells in the removal of deleterious senescent cells. Immun Ageing 2020;17:16.

[31]

Kaufman JM, Lapauw B, Mahmoud A et al Aging and the male reproductive system. Endocr Rev 2019;40:906–972.

[32]

Kim B, Breton S. Androgens are essential for epithelial cell recovery after efferent duct ligation in the initial segment of the mouse epididymis. Biol Reprod 2020;102:76–83.

[33]

Last J, Brenner M, Yen HT et al MFG-E8-derived peptide attenuates inflammation and injury after renal ischemia-reperfusion in mice. Heliyon 2020;6:e05794.

[34]

Lei J, Xin Z, Liu N et al Senescence-resistant human mesenchymal progenitor cells counter aging in primates. Cell 2025;188:5039–5061.e35.e5035.

[35]

Leir SH, Yin S, Kerschner JL et al An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR. Life Sci Alliance 2020;3

[36]

Leng SX, Pawelec G. Single-cell immune atlas for human aging and frailty. Life Med 2022;1:67–70.

[37]

Li X, Qiao F, Guo J et al In situ architecture of the intercellular organelle reservoir between epididymal epithelial cells by volume electron microscopy. Nat Commun 2025a;16:1664.

[38]

Li Y, Wang W, Zhu R et al STAT1 mediates the pro-inflammatory role of GBP5 in colitis. Commun Biol 2025b;8:385.

[39]

Liu F, Lu Y, Wang X et al Identification of FOXO1 as a geroprotector in human synovium through single-nucleus transcriptomic profiling. Protein Cell 2024;15:441–459.

[40]

Liu J, Bai Y, Tang J et al Senescent B cells regulate CD38 expression via FOXO1 in pneumonia resulting from PIK3CD (R437C) mutations. Life Med 2025;4:lnaf030.

[41]

Long X, Chen L, Xiao X et al Structure, function, and research progress of primary cilia in reproductive physiology and reproductive diseases. Front Cell Dev Biol 2024;12:1418928.

[42]

López-Otín C, Blasco MA, Partridge L et al The hallmarks of aging. Cell 2013;153:1194–1217.

[43]

Lu H, Jing Y, Zhang C et al Aging hallmarks of the primate ovary revealed by spatiotemporal transcriptomics. Protein Cell 2024;15:364–384.

[44]

Ma S, Ji Z, Zhang B et al Spatial transcriptomic landscape unveils immunoglobin-associated senescence as a hallmark of aging. Cell 2024;187:7025–7044.e7034.

[45]

Mao X, Xu M, Yan X et al Single-cell omics in tracing cellular heterogeneity of drug-induced liver injury: technological landscape and prospective application. Hlife 2024;2:325–341.

[46]

Martinez-Jimenez CP, Eling N, Chen H-C et al Aging increases cell-to-cell transcriptional variability upon immune stimulation. Science 2017;355:1433–1436.

[47]

Martins R, Lithgow GJ, Link W. Long live FOXO: unraveling the role of FOXO proteins in aging and longevity. Aging Cell 2016;15:196–207.

[48]

Matsumoto AM. Andropause: clinical implications of the decline in serum testosterone levels with aging in men. J Gerontol A Biol Sci Med Sci 2002;57:M76–M99.

[49]

Mebratu YA, Soni S, Rosas L et al The aged extracellular matrix and the profibrotic role of senescence-associated secretory phenotype. Am J Physiol Cell Physiol 2023;325:C565–C579.

[50]

Naser IH, Hamza AA, Alhili A et al Atypical chemokine receptor 4 (ACKR4/CCX-CKR): a comprehensive exploration across physiological and pathological landscapes in contemporary research. Cell Biochem Funct 2024;42:e4009.

[51]

Nelson G, Wordsworth J, Wang C et al A senescent cell bystander effect: senescence-induced senescence. Aging Cell 2012;11:345–349.

[52]

Nieschlag E. Late-onset hypogonadism: a concept comes of age. Andrology 2020;8:1506–1511.

[53]

O’Hara L, Welsh M, Saunders PT et al Androgen receptor expression in the caput epididymal epithelium is essential for development of the initial segment and epididymal spermatozoa transit. Endocrinology 2011;152:718–729.

[54]

Pan Z-N, Zhang H-L, Zhang K-H et al Insufficient MIRO1 contributes to declined oocyte quality during reproductive aging. Sci China Life Sci 2025;68:764–776.

[55]

Pinel L, Mandon M, Cyr DG. Tissue regeneration and the epididymal stem cell. Andrology 2019;7:618–630.

[56]

Pino V, Sanz A, Valdés N et al The effects of aging on semen parameters and sperm DNA fragmentation. JBRA Assist Reprod 2020;24:82–86.

[57]

Rinaldi VD, Donnard E, Gellatly K et al An atlas of cell types in the mouse epididymis and vas deferens. Elife 2020;9:e55474.

[58]

Saewu A, Kadunganattil S, Raghupathy R et al Clusterin in the mouse epididymis: possible roles in sperm maturation and capacitation. Reproduction 2017;154:867–880.

[59]

Sárvári AK, Van Hauwaert EL, Markussen LK et al Plasticity of epididymal adipose tissue in response to diet-induced obesity at single-nucleus resolution. Cell Metab 2021;33:437–453.e435.

[60]

Schafer MJ, White TA, Iijima K et al Cellular senescence mediates fibrotic pulmonary disease. Nat Commun 2017;8:14532.

[61]

Shi J, Fok KL, Dai P et al Spatio-temporal landscape of mouse epididymal cells and specific mitochondria-rich segments defined by large-scale single-cell RNA-seq. Cell Discov 2021;7:34.

[62]

Shum W, Zhang BL, Cao AS et al Calcium homeostasis in the epididymal microenvironment: is extracellular calcium a cofactor for matrix gla Protein-Dependent scavenging regulated by vitamins. Front Cell Dev Biol 2022;10:994291.

[63]

Sullivan R, Mieusset R. The human epididymis: its function in sperm maturation. Hum Reprod Update 2016;22:574–587.

[64]

Sun G, He Z, Lv D et al Reprogramming the GRHL2-CDK19 axis by gene therapy alleviates prostate aging. Nat Aging 2026;6:252–269.

[65]

Sun Y, Li Q, Kirkland JL. Targeting senescent cells for a healthier longevity: the roadmap for an era of global aging. Life Med 2022;1:103–119.

[66]

Tang W, Wang K, Feng Y et al Exploration of the mechanism and therapy of ovarian aging by targeting cellular senescence. Life Med 2025;4:lnaf004.

[67]

van Der Horst G, Seier JV, Spinks AC et al The maturation of sperm motility in the epididymis and vas deferens of the vervet monkey, Cercopithecus aethiops. Int J Androl 1999;22:197–207.

[68]

Vinay L, Hess RA, Belleannée C. Human efferent ductules and epididymis display unique cell lineages with motile and primary cilia. Andrology 2025;13:894–910.

[69]

Walters H. IgG is an early driver of aging. Nat Aging 2024;4:279.

[70]

Wang H, Du Y. Reprogramming aging: genetically enhanced mesenchymal progenitor cells show systemic rejuvenation in primates. Life Med 2025;4:lnaf022.

[71]

Wang H, Lyu W, Sun Y et al Heterochronic parabiosis alters the transcriptomic landscape to combat aging and aging-related diseases in aging-accelerated mice. Life Med 2025;4:lnaf025.

[72]

Wang S, Zheng Y, Li J et al Single-Cell transcriptomic atlas of primate ovarian aging. Cell 2020;180:585–600.e19.

[73]

Weissgerber P, Kriebs U, Tsvilovskyy V et al Excision of Trpv6 gene leads to severe defects in epididymal Ca2+ absorption and male fertility much like single D541A pore mutation. J Biol Chem 2012;287:17930–17941.

[74]

Wu Z, Qu J, Zhang W et al; Aging Biomarker Consortium. Biomarkers of ageing of humans and non-human primates. Nat Rev Mol Cell Biol 2025;26:826–847.

[75]

Yan Z, Wang P, Yang Q et al Single-Cell RNA sequencing reveals an atlas of hezuo pig testis cells. Int J Mol Sci 2024;25:9786.

[76]

Yang J-H, Hayano M, Griffin PT et al Loss of epigenetic information as a cause of mammalian aging. Cell 2023;186:305–326.e27.

[77]

Yang R, Browne JA, Eggener SE et al A novel transcriptional network for the androgen receptor in human epididymis epithelial cells. Mol Hum Reprod 2018;24:433–443.

[78]

Yang Y, Lu X, Liu N et al Metformin decelerates aging clock in male monkeys. Cell 2024;187:6358–6378.e29.

[79]

Zhang G, Sun Y, Guan M et al Single-cell and spatial transcriptomic investigation reveals the spatiotemporal specificity of the beta-defensin gene family during mouse sperm maturation. Cell Commun Signal 2024;22:267.

[80]

Zhao H, Yu C, He C et al The immune characteristics of the epididymis and the immune pathway of the epididymitis caused by different pathogens. Front Immunol 2020;11:2115.

[81]

Zhao Q, Ma R, Huang K et al Single-cell RNA sequencing profiles age-related transcriptional landscapes in human hair follicle cells. Hlife 2025;3:626–646.

[82]

Zhao Y, Ma C, Chen C et al STAT1 contributes to microglial/macrophage inflammation and neurological dysfunction in a mouse model of traumatic brain injury. J Neurosci 2022;42:7466–7481.

[83]

Zheng F, Lei J, He Z et al FOXO3-engineered human mesenchymal stem cells efficiently enhance post-ischemic stroke functional rehabilitation. Protein Cell 2025;16:365–373.

[84]

Zhou W, De Iuliis GN, Dun MD et al Characteristics of the epididymal luminal environment responsible for sperm maturation and storage. Front Endocrinol (Lausanne) 2018;9:59.

[85]

Zhu H, Chen J, Liu K et al Human PBMC scRNA-seq-based aging clocks reveal ribosome to inflammation balance as a single-cell aging hallmark and super longevity. Sci Adv 2023;9:eabq7599.eabq7599.

Rights & permissions

The Author(s) 2026. Published by Oxford University Press on behalf of Higher Education Press.

PDF (14316KB)

15

Accesses

0

Citation

Detail

Sections
Recommended

/