An improved method for phasing crystal structures with low non-crystallographic symmetry using cryo-electron microscopy data
Jia Wang, Weiguang Wang, Wen Song, Zhifu Han, Heqiao Zhang, Jijie Chai, Hongwei Wang, Jiawei Wang
An improved method for phasing crystal structures with low non-crystallographic symmetry using cryo-electron microscopy data
[1] |
Abrescia NG, Grimes JM, Oksanen HM, Bamford JK, Bamford DH, Stuart D I (2011) The use of low-resolution phasing followed by phase extension from 7.6 to 2.5 A resolution with noncrystallographic symmetry to solve the structure of a bacteriophage capsid protein. Acta Crystallogr D Biol Crystallogr 67:228–232
CrossRef
Google scholar
|
[2] |
Anderson DH, Kickhoefer VA, Sievers SA, Rome LH, Eisenberg D (2007) Draft crystal structure of the vault shell at 9-A resolution. PLoS Biol 5:e318
|
[3] |
Dodson EJ (2001) Using electron-microscopy images as a model for molecular replacement. Acta Crystallogr D Biol Crystallogr 57:1405–1409
CrossRef
Google scholar
|
[4] |
Jenni S, Ban N (2009) Imperfect pseudo-merohedral twinning in crystals of fungal fatty acid synthase. Acta Crystallogr D Biol Crystallogr 65:101–111
CrossRef
Google scholar
|
[5] |
Kuhlbrandt W (2014) Cryo-EM enters a new era. eLife 3:e03678
|
[6] |
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ (2007) Phaser crystallographic software. J Appl Crystallogr 40:658–674
CrossRef
Google scholar
|
[7] |
Navaza J (2008) Combining X-ray and electron-microscopy data to solve crystal structures. Acta Crystallogr D Biol Crystallogr 64:70–75
CrossRef
Google scholar
|
[8] |
Nemecek D, Plevka P, Boura E (2013) Using cryoEM reconstruction and phase extension to determine crystal structure of bacteriophage varphi6 major capsid protein. Protein J 32:635–640
CrossRef
Google scholar
|
[9] |
Read RJ (1986) Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallogr Sect A 42:140–149
CrossRef
Google scholar
|
[10] |
Rossmann MG (1972) The molecular replacement method: a collection of papers on the use of non-crystallographic symmetry, vol 13. Routledge, London
|
[11] |
Song W, Wang J, Han Z, Zhang Y, Zhang H, Wang W, Chang J, Xia B, Fan S, Zhang D
CrossRef
Google scholar
|
[12] |
Stuart DI, Abrescia NG (2013) From lows to highs: using lowresolution models to phase X-ray data. Acta Crystallogr D Biol Crystallogr 69:2257–2265
CrossRef
Google scholar
|
[13] |
Terwilliger TC (2000) Maximum-likelihood density modification. Acta Crystallogr D Biol Crystallogr 56:965–972
CrossRef
Google scholar
|
[14] |
Trapani S, Schoehn G, Navaza J, Abergel C (2010) Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions. Acta Crystallogr D Biol Crystallogr 66:514–521
CrossRef
Google scholar
|
[15] |
Xiong Y (2008) From electron microscopy to X-ray crystallography: molecular-replacement case studies. Acta Crystallogr D Biol Crystallogr 64:76–82
CrossRef
Google scholar
|
/
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