Metabolomic profiling reveals that the heterogeneity of microhabitats can assist intertidal mollusks in surviving extreme cold events

Ning Zhang , Chen-Ming Lv , Xiao-Ning Zhang , Gianluca Sarà , Yun-Wei Dong

Marine Life Science & Technology ›› : 1 -16.

PDF
Marine Life Science & Technology ›› : 1 -16. DOI: 10.1007/s42995-025-00302-z
Research Paper

Metabolomic profiling reveals that the heterogeneity of microhabitats can assist intertidal mollusks in surviving extreme cold events

Author information +
History +
PDF

Abstract

Microhabitat heterogeneity results in significant variations in the thermal environment on a small spatial scale, leading to different intensities of cold stress during extreme low-temperature events. Investigating variations in body temperature and metabolomic responses of organisms inhabiting different microhabitats emerges as an important task for understanding how organisms respond to more frequent extreme low-temperature events in the face of climate change. In the present study, we measured substrate temperature, air temperature, wind speed, light intensity, and body temperature to evaluate the relative importance of drivers that affect body temperature in different microhabitats, and determined the metabolomic responses of intertidal snails Littorina brevicula and limpets Cellana toreuma from different microhabitats (snail: exposed vs. shaded rock; limpet, rock vs. tidal pool) during extreme low-temperature event in winter. Results showed that microhabitat type, substrate temperature, air temperature, wind speed, and light intensity contribute notably to the body temperatures. During extreme low-temperature events, mollusks collected from different microhabitats exhibited microhabitat-specific metabolomic responses that are associated with cellular stress response, energy metabolism, immune response, nucleotide metabolism, and osmoregulation. These metabolic pathways were highly induced in the more exposed areas (exposed rock for snails and rocky environment for limpets). Notably, in different microhabitats, the metabolites enriched from these pathways showed significant correlations with microclimate environmental variables (i.e., substrate temperature, wind speed, and body temperature). Overall, these findings highlight the importance of microhabitat heterogeneity for intertidal species surviving extreme cold events and are essential for understanding cold adaptation of intertidal species in the context of climate change.

Keywords

Body temperature / Environment factor / Intertidal snail / Limpet / Metabolomic response / Microhabitat

Cite this article

Download citation ▾
Ning Zhang, Chen-Ming Lv, Xiao-Ning Zhang, Gianluca Sarà, Yun-Wei Dong. Metabolomic profiling reveals that the heterogeneity of microhabitats can assist intertidal mollusks in surviving extreme cold events. Marine Life Science & Technology 1-16 DOI:10.1007/s42995-025-00302-z

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

AdamAC, LieKK, MorenM, SkjærvenKH. High dietary arachidonic acid levels induce changes in complex lipids and immune-related eicosanoids and increase levels of oxidised metabolites in zebrafish (Danio rerio). Br J Nutr, 2017, 117: 1075-1085

[2]

AderemiAV, AyelesoAO, OyedapoOO, MukwevhoE. Metabolomics: a scoping review of its role as a tool for disease biomarker discovery in selected non-communicable diseases. Metabolites, 2021, 11: 418

[3]

AguileraMA, BroitmanBR, ThielM. Spatial variability in community composition on a granite breakwater versus natural rocky shores: lack of microhabitats suppresses intertidal biodiversity. Mar Pollut Bull, 2014, 87: 257-268

[4]

AirakiM, LeterrierM, MateosRM, ValderramaR, ChakiM, BarrosoJB, Del RíoLA, PalmaJM, CorpasFJ. Metabolism of reactive oxygen species and reactive nitrogen species in pepper (Capsicum annuum L.) plants under low temperature stress. Plant Cell Environ, 2012, 35: 281-295

[5]

AndersonMJ ColtonT, EverittB, PiegorschWW, RuggeriF, TeugelsJL. Permutational multivariate analysis of variance (PERMANOVA). Wiley StatsRef: statistics reference online, 2017 1 New York Wiley 1-15

[6]

BakerSA, RutterJ. Metabolites as signalling molecules. Nat Rev Mol Cell Biol, 2023, 24: 355-374

[7]

BauerF, KnightsAM, HanleyME, GriffinJN, FoggoA, BrownA, FirthLB. Topography-based modulation of environmental factors as a mechanism for intertidal microhabitat formation: a basis for marine ecological design. Mar Pollut Bull, 2024, 202 ArticleID: 116358

[8]

BelgiuM, DrăguţL. Random forest in remote sensing: a review of applications and future directions. ISPRS J Photogramm Remote Sens, 2016, 114: 24-31

[9]

BoulangerEF, Sabag-DaigleA, ThirugnanasambanthamP, GopalanV, AhmerBMM. Sugar-phosphate toxicities. Microbiol Mol Biol Rev, 2021, 85: e00123-e221

[10]

BozinovicF, CalosiP, SpicerJI. Physiological correlates of geographic range in animals. Annu Rev Ecol Evol Syst, 2011, 42: 155-179

[11]

BuczynskiMW, DumlaoDS, DennisEA. Thematic review series: proteomics. An integrated omics analysis of eicosanoid biology. J Lipid Res, 2009, 50: 1015-1038

[12]

CambiaghiA, FerrarioM, MasseroliM. Analysis of metabolomic data: tools, current strategies and future challenges for omics data integration. Brief Bioinform, 2017, 18: 498-510

[13]

ChattopadhyayMK, RaghuG, SharmaYVRK, BijuAR, RajasekharanMV, ShivajiS. Increase in oxidative stress at low temperature in an Antarctic bacterium. Curr Microbiol, 2011, 62: 544-546

[14]

ChibaS, IidaT, TomiokaA, AzumaN, KuriharaT, TanakaK. Population divergence in cold tolerance of the intertidal gastropod Littorina brevicula explained by habitat-specific lowest air temperature. J Exp Mar Biol Ecol, 2016, 481: 49-56

[15]

ChikooreH, MbokodoIL, SingoMV, MohomiT, MunyaiRB, HavengaH, MahloboDD, EngelbrechtFA, BopapeM-JM, NdaranaT. Dynamics of an extreme low temperature event over South Africa amid a warming climate. Weather Clim Extrem, 2024, 44, ArticleID: 100668

[16]

CramerMJ, WilligMR. Habitat heterogeneity, species diversity and null models. Oikos, 2005, 108: 209-218

[17]

Currie-OlsenD, HeskethAV, GrimmJ, KennedyJ, MarshallKE, HarleyCDG. Lethal and sublethal implications of low temperature exposure for three intertidal predators. J Therm Biol, 2023, 114 ArticleID: 103549

[18]

DasUN. Arachidonic acid and other unsaturated fatty acids and some of their metabolites function as endogenous antimicrobial molecules: a review. J Adv Res, 2018, 11: 57-66

[19]

DashtyM. A quick look at biochemistry: carbohydrate metabolism. Clin Biochem, 2013, 46: 1339-1352

[20]

de MendozaD, CronanJE. Thermal regulation of membrane lipid fluidity in bacteria. Trends Biochem Sci, 1983, 8: 49-52

[21]

DeákB, KovácsB, RádaiZ, ApostolovaI, KelemenA, KissR, LukácsK, PalpurinaS, SopotlievaD, BáthoriF, ValkóO. Linking environmental heterogeneity and plant diversity: the ecological role of small natural features in homogeneous landscapes. Sci Total Environ, 2021, 763 ArticleID: 144199

[22]

Delgado-BaquerizoM, MaestreFT, ReichPB, JeffriesTC, GaitanJJ, EncinarD, BerdugoM, CampbellCD, SinghBK. Microbial diversity drives multifunctionality in terrestrial ecosystems. Nat Commun, 2016, 7: 10541

[23]

DennyMW, DowdWW, BilirL, MachKJ. Spreading the risk: small-scale body temperature variation among intertidal organisms and its implications for species persistence. J Exp Mar Biol Ecol, 2011, 400: 175-190

[24]

DongYW. Roles of multi-level temperature-adaptive responses and microhabitat variation in establishing distributions of intertidal species. J Exp Biol, 2023, 226: jeb245745

[25]

DongYW, ZhangS. Ecological relevance of energy metabolism: transcriptional responses in energy sensing and expenditure to thermal and osmotic stresses in an intertidal limpet. Funct Ecol, 2016, 30: 1539-1548

[26]

FoulkA, GouhierT, ChoiF, TorossianJL, MatzelleA, SittenfeldD, HelmuthB. Physiologically informed organismal climatologies reveal unexpected spatiotemporal trends in temperature. Conserv Physiol, 2024, 12: coae025

[27]

FunkCD. Prostaglandins and leukotrienes: advances in eicosanoid biology. Science, 2001, 294: 1871-1875

[28]

GillLT, KennedyJR, BoxIC, MarshallKE. Ice in the intertidal: patterns and processes of freeze tolerance in intertidal invertebrates. J Exp Biol, 2024, 227: jeb247043

[29]

GonzálezA, EspinozaD, VidalC, MoenneA. Benzopyrene induces oxidative stress and increases expression and activities of antioxidant enzymes, and CYP450 and GST metabolizing enzymes in Ulva lactuca (Chlorophyta). Planta, 2020, 252: 107

[30]

GreenbergCH, HarrisLD, NearyDG. A comparison of bird communities in burned and salvage-logged, clearcut, and forested Florida sand pine scrub. Wilson Bull, 1995, 107: 40-54

[31]

GrotjahnR, BlackR, LeungR, WehnerMF, BarlowM, BosilovichM, GershunovA, GutowskiWJ, GyakumJR, KatzRW, LeeYY, LimPrabhatYK. North American extreme temperature events and related large scale meteorological patterns: a review of statistical methods, dynamics, modeling, and trends. Clim Dyn, 2016, 46: 1151-1184

[32]

GuoL, LiLS, ZhouSB, XiaoPY, ZhangL. Metabolomic insight into regulatory mechanism of heterotrophic bacteria nitrification-aerobic denitrification bacteria to high-strength ammonium wastewater treatment. Bioresour Technol, 2024, 394 ArticleID: 130278

[33]

HanGD, ZhangS, MarshallDJ, KeCH, DongYW. Metabolic energy sensors (AMPK and SIRT1), protein carbonylation and cardiac failure as biomarkers of thermal stress in an intertidal limpet: linking energetic allocation with environmental temperature during aerial emersion. J Exp Biol, 2013, 216: 3273-3282

[34]

HanY, ZengXL, HuaL, QuanXP, ChenY, ZhouMF, ChuangYC, LiY, WangSP, ShenX, WeiL, YuanZ, ZhaoYH. The fusion of multi-omics profile and multimodal EEG data contributes to the personalized diagnostic strategy for neurocognitive disorders. Microbiome, 2024, 12: 12

[35]

HannaVS, HafezEAA. Synopsis of arachidonic acid metabolism: a review. J Adv Res, 2018, 11: 23-32

[36]

HargensAR, ShabicaSV. Protection against lethal freezing temperatures by mucus in an Antarctic limpet. Cryobiology, 1973, 10: 331-337

[37]

HatseS, De ClercqE, BalzariniJ. Role of antimetabolites of purine and pyrimidine nucleotide metabolism in tumor cell differentiation. Biochem Pharmacol, 1999, 58: 539-555

[38]

HeidrichL, BaeS, LevickS, SeiboldS, WeisserW, KrzystekP, MagdonP, NaussT, SchallP, SerebryanykA, WöllauerS, AmmerC, BässlerC, DoerflerI, FischerM, GossnerMM, HeurichM, HothornT, JungK, KreftH, SchulzeED, SimonsN, ThornS, MüllerJ. Heterogeneity–diversity relationships differ between and within trophic levels in temperate forests. Nat Ecol Evol, 2020, 4: 1204-1212

[39]

HelmuthB. Intertidal mussel microclimates: predicting the body temperature of a sessile invertebrate. Ecol Monogr, 1998, 68: 51-74

[40]

HelmuthB, HofmannGE. Microhabitats, thermal heterogeneity, and patterns of physiological stress in the rocky intertidal zone. Biol Bull, 2001, 201: 374-384

[41]

HollandB, LoomisSH, GordonJL. Ice formation and freezing damage in the foot muscle of the intertidal snail Melampus bidentatus. Cryobiology, 1991, 28: 491-498

[42]

HortonB. Geographical distribution of changes in maximum and minimum temperatures. Atmos Res, 1995, 37: 101-117

[43]

KennedyJR, HarleyCD, MarshallKE. Drivers of plasticity in freeze tolerance in the intertidal mussel Mytilus trossulus. J Exp Biol, 2020, 223: jeb233478

[44]

Klein Tank AMG, Zwiers FW, Zhang X (2009) Guidelines on analysis of extremes in a changing climate in support of informed decisions for adaptation. World Meteorological Organization, WCDMP No. 72, Geneva, Switzerland

[45]

KostylevVE, ErlandssonJ, MingMY, WilliamsGA. The relative importance of habitat complexity and surface area in assessing biodiversity: fractal application on rocky shores. Ecol Complex, 2005, 2: 272-286

[46]

KoyamaT, TexadaMJ, HalbergKA, RewitzK. Metabolism and growth adaptation to environmental conditions in Drosophila. Cell Mol Life Sci, 2020, 77: 4523-4551

[47]

KulkarniOP, LichtnekertJ, AndersHJ, MulaySR. The immune system in tissue environments regaining homeostasis after injury: is “Inflammation” always inflammation?. Mediators Inflamm, 2016, 2016: 2856213

[48]

LangfelderP, HorvathS. WGCNA: an R package for weighted correlation network analysis. BMC Bioinform, 2008, 9: 559

[49]

LankaduraiBP, NagatoEG, SimpsonMJ. Environmental metabolomics: an emerging approach to study organism responses to environmental stressors. Environ Rev, 2013, 21: 180-205

[50]

LathleanJ, SeurontL. Infrared thermography in marine ecology: methods, previous applications and future challenges. Mar Ecol Prog Ser, 2014, 514: 263-277

[51]

LavergneS, MouquetN, ThuillerW, RonceO. Biodiversity and climate change: integrating evolutionary and ecological responses of species and communities. Annu Rev Ecol Evol Syst, 2010, 41: 321-350

[52]

LeeuwisRHJ, GamperlAK HawkinsSJ, LemassonAJ, AllcockAL. Adaptations and plastic phenotypic responses of marine animals to the environmental challenges of the high intertidal zone. Oceanography and marine biology: an annual review, 2022 1 Boca Raton CRC Press 625-679 60

[53]

LiPF, LiuJ, SaleemM, LiGL, LuanL, WuM, LiZP. Reduced chemodiversity suppresses rhizosphere microbiome functioning in the mono-cropped agroecosystems. Microbiome, 2022, 10: 108

[54]

LiY, WeiKK, ChenK, HeJQ, ZhaoY, YangG, YaoN, NiuB, WangB, WangL, FengPY, YangZ. Forecasting monthly water deficit based on multi-variable linear regression and random forest models. Water, 2023, 15: 1075

[55]

LieKK, KvalheimK, RasingerJD, HarboeT, NordgreenA, MorenM. Vitamin A and arachidonic acid altered the skeletal mineralization in Atlantic cod (Gadus morhua) larvae without any interactions on the transcriptional level. Comp Biochem Physiol A Mol Integr Physiol, 2016, 191: 80-88

[56]

LiuR, BaoZX, ZhaoPJ, LiGH. Advances in the study of metabolomics and metabolites in some species interactions. Molecules, 2021, 26: 3311

[57]

MaLX, WangJ, DennyMW, DongYW. Hindcasted body temperatures reveal underestimated thermal stress faced by intertidal species. Glob Ecol Biogeogr, 2024, 33, ArticleID: e13908

[58]

MarshallDJ, RezendeEL, BaharuddinN, ChoiF, HelmuthB. Thermal tolerance and climate warming sensitivity in tropical snails. Ecol Evol, 2015, 5: 5905-5919

[59]

MetalloCM, Vander HeidenMG. Understanding metabolic regulation and its influence on cell physiology. Mol Cell, 2013, 49: 388-398

[60]

MirandaNAF, PeerN, IshakMZB, MarshallDJ. Heat-wave tolerance in tropical intertidal animals: accounting for thermal and desiccation tolerances. Ecol Indic, 2019, 107, ArticleID: 105561

[61]

MirzaMMQ. Climate change and extreme weather events: can developing countries adapt?. Clim Policy, 2003, 3: 233-248

[62]

NeidlemanSL. Effects of temperature on lipid unsaturation. Biotechnol Genet Eng Rev, 1987, 5: 245-268

[63]

NewmanR. The global costs of extreme weather that are attributable to climate change. Nat Commun, 2023, 14: 6103

[64]

NgTPT, LauSLY, SeurontL, DaviesMS, StaffordR, MarshallDJ, WilliamsGA. Linking behaviour and climate change in intertidal ectotherms: insights from littorinid snails. J Exp Mar Biol Ecol, 2017, 492: 121-131

[65]

PaçalA, HasslerB, WeigelK, KurnazML, WehnerMF, EyringV. Detecting extreme temperature events using gaussian mixture models. J Geophys Res-Atmos, 2023, 128: e2023JD038906

[66]

PangB, McFalineJL, BurgisNE, DongM, TaghizadehK, SullivanMR, ElmquistCE, CunninghamRP, DedonPC. Defects in purine nucleotide metabolism lead to substantial incorporation of xanthine and hypoxanthine into DNA and RNA. Proc Natl Acad Sci, 2012, 109: 2319-2324

[67]

PedleyAM, BenkovicSJ. A new view into the regulation of purine metabolism: the purinosome trends. Biochem Sci, 2017, 42: 141-154

[68]

PörtnerHO, BennettAF, BozinovicF, ClarkeA, LardiesMA, LucassenM, PelsterB, SchiemerF, StillmanJH. Trade-offs in thermal adaptation: the need for a molecular to ecological integration. Physiol Biochem Zool, 2006, 79: 295-313

[69]

ProbstP, WrightMN, BoulesteixA. Hyperparameters and tuning strategies for random forest. Wires Data Min Knowl Discov, 2019, 9, ArticleID: e1301

[70]

ReidHB, HarleyCDG. Low temperature exposure determines performance and thermal microhabitat use in an intertidal gastropod (Littorina scutulata) during the winter. Mar Ecol Prog Ser, 2021, 660: 105-118

[71]

RuedaEM, JohnsonJE, GiddabasappaA, SwaroopA, BrooksMJ, SigelI, ChaneySY, FoxDA. The cellular and compartmental profile of mouse retinal glycolysis, tricarboxylic acid cycle, oxidative phosphorylation, and ~P transferring kinases. Mol Vis, 2016, 22: 847-885

[72]

Saha S, Moorthi S, Wu XR, Wang JD, Nadiga S, Tripp P, Behringer D, Hou YT, Chuang HY, Iredell M, Ek M, Meng J, Yang RQ, Mendez M, van den Dool H, Zhang Q, Wang WQ, Chen MY, Becker E (2011) NCEP climate forecast system version 2 (CFSv2) selected hourly time-series products. https://doi.org/10.5065/D6N877VB

[73]

ScrosatiRA, CameronNM. Mass bleaching in intertidal canopy-forming seaweeds after unusually low winter air temperatures in Atlantic Canada. Diversity, 2023, 15: 750

[74]

SeabraR, WetheyDS, SantosAM, LimaFP. Side matters: microhabitat influence on intertidal heat stress over a large geographical scale. J Exp Mar Biol Ecol, 2011, 400: 200-208

[75]

SiddiquiA, CeppiP. A non-proliferative role of pyrimidine metabolism in cancer. Mol Metab, 2020, 35 ArticleID: 100962

[76]

SlazakB, KaltenböckK, SteffenK, RogalaM, Rodríguez-RodríguezP, NilssonA, ShariatgorjiR, AndrénPE, GöranssonU. Cyclotide host-defense tailored for species and environments in violets from the Canary Islands. Sci Rep, 2021, 11: 12452

[77]

SokolovaIM, FrederichM, BagweR, LannigG, SukhotinAA. Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates. Mar Environ Res, 2012, 79: 1-15

[78]

SomeroGN. Thermal physiology and vertical zonation of intertidal animals: optima, limits, and costs of living. Integr Comp Biol, 2002, 42: 780-789

[79]

SteinA, GerstnerK, KreftH. Environmental heterogeneity as a universal driver of species richness across taxa, biomes and spatial scales. Ecol Lett, 2014, 17: 866-880

[80]

StottPA, ChristidisN, OttoFEL, SunY, VanderlindenJP, van OldenborghGJ, VautardR, von StorchH, WaltonP, YiouP, ZwiersFW. Attribution of extreme weather and climate-related events. Wires Clim Change, 2016, 7: 23-41

[81]

SuY, GuJY, ZhouYG, DongYW. Metabolomic responses of Atlantic salmon (Salmo salar) cultured during the pre-smolt, smolt and post-smolt stages. Aquaculture, 2024, 582, ArticleID: 740552

[82]

SunYX, HuLS, DongYW. Microhabitat-specific diurnal metabolomic responses of the intertidal limpet Cellana toreuma to winter low temperature. iScience, 2023, 26: 106128

[83]

SunagawaS, CoelhoLP, ChaffronS, KultimaJR, LabadieK, SalazarG, DjahanschiriB, ZellerG, MendeDR, AlbertiA, Cornejo-CastilloFM, CosteaPI, CruaudC, d’OvidioF, EngelenS, FerreraI, GasolJM, GuidiL, HildebrandF, KokoszkaF. Structure and function of the global ocean microbiome. Science, 2015, 348: 1261359

[84]

TakadaY. Dimorphic migration, growth, and fecundity in a seasonally split population of Littorina brevicula (Mollusca: Gastropoda) on a boulder shore. Popul Ecol, 2003, 45: 141-148

[85]

Van DooremalenC, KoekkoekJ, EllersJ. Temperature-induced plasticity in membrane and storage lipid composition: thermal reaction norms across five different temperatures. J Insect Physiol, 2011, 57: 285-291

[86]

van RavenzwaayB, CunhaGC-P, LeiboldE, LooserR, MellertW, ProkoudineA, WalkT, WiemerJ. The use of metabolomics for the discovery of new biomarkers of effect. Toxicol Lett, 2007, 172: 21-28

[87]

van RossumHM, KozakBU, PronkJT, van MarisAJA. Engineering cytosolic acetyl-coenzyme A supply in Saccharomyces cerevisiae: pathway stoichiometry, free-energy conservation and redox-cofactor balancing. Metab Eng, 2016, 36: 99-115

[88]

WangJ, WangS. Variations of supercooling capacity in intertidal gastropods. Animals, 2023, 13: 724

[89]

WetheyDS. Biogeography, competition, and microclimate: the barnacle Chthamalus fragilis in New England. Integr Comp Biol, 2002, 42: 872-880

[90]

WetheyDS, BrinLD, HelmuthB, MislanKAS. Predicting intertidal organism temperatures with modified land surface models. Ecol Model, 2011, 222: 3568-3576

[91]

ZhangN, ElvidgeCK, LiQL, FuSJ, XiaJG. Does mutualism provide additional indirect benefits? Behavioral indicators of chemical communication in a temporally dynamic fish-mussel mutualism. Behav Ecol Sociobiol, 2024, 78: 21

[92]

ZhuWL, LiQY, PengM, YangCL, ChenXL, FengPF, LiuQY, ZhangB, ZengDG, ZhaoYZ. Biochemical indicators, cell apoptosis, and metabolomic analyses of the low-temperature stress response and cold tolerance mechanisms in Litopenaeus vannamei. Sci Rep, 2024, 14: 15242

[93]

ZrennerR, StittM, SonnewaldU, BoldtR. Pyrimidine and purine biosynthesis and degradation in plants. Annu Rev Plant Biol, 2006, 57: 805-836

RIGHTS & PERMISSIONS

Ocean University of China

AI Summary AI Mindmap
PDF

159

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/