EasyMetagenome: A user-friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research
1. Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong, China
2. State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
3. School of Horticulture, Anhui Agricultural University, Hefei, China
4. College of Life Sciences, Qingdao Agricultural University, Qingdao, China
5. Key Laboratory for Bio-Electromagnetic Environment and Advanced Medical Theranostics, School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing, Jiangsu, China
6. Center for Water and Ecology, State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China
7. Immunology Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
8. Research Center for Parasites and Vectors, College of Veterinary Medicine, Hunan Agricultural University, Changsha, Hunan, China
9. Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, Zhejiang, China
10. Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin, China
11. Key Laboratory for Molecular Genetic Mechanisms and Intervention Research on High Altitude Disease of Tibet Autonomous Region, School of Medicine, Xizang Minzu University, Xianyang, China
12. Karolinska Institutet, Department of Microbiology, Tumor and Cell Biology, Stockholm, Sweden
13. College of Environment, Zhejiang University of Technology, Hangzhou, China
14. College of Environmental and Resource Sciences, Zhejiang Agriculture and Forestry University, Hangzhou, China
15. The College of Forestry, Beijing Forestry University, Beijing, China
16. Department of Bioinformatics, Hangzhou VicrobX Biotech Co., Ltd, Hangzhou, Zhejiang, China
17. Anhui Province Key Laboratory of Integrated Pest Management on Crops, College of Plant Protection, Anhui Agricultural University, Hefei, China
18. Xiangya School of Basic Medicine, Central South University, Changsha, Hunan, China
19. Institute of Microbiology,Guangdong Academy of Sciences, Guangzhou, Guangdong, China
20. Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, School of Life Sciences, Heilongjiang University, Harbin, China
21. College of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China
22. Sansure Biotech Incorporation, Changsha, Hunan, China
23. School of Food Science and Biology, Hebei University of Science and Technology, Shijiazhuang, Hebei, China
24. School of Life Sciences, Shanxi Datong University, Datong, China
25. Department of Health & Environmental Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu, China
26. College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China
27. School of Agriculture, Food and Ecosystem Sciences, Faculty of Science, The University of Melbourne, VIC, Australia
28. Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa-shi, Chiba, Japan
29. Institute of Biotechnology, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland
30. Shanghai Maritime University, Shanghai, China
31. Suzhou Medical College, Soochow University, Suzhou, Jiangsu, China
32. Biomarker Discovery and Validation Facility, Institute of Clinical Medicine, Peking Union Medical College Hospital, Beijing, China
33. Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hong Kong, China
34. College of Biology and Oceanography, Weifang University, Weifang, Shandong, China
35. College of Environmental Science and Engineering, Beijing University of Technology, Beijing, China
36. College of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou, China
37. School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong, China
38. Department of Renewable Resources, University of Alberta, Edmonton, Alberta, Canada
39. School of Geographical Sciences, Northeast Normal University, Changchun, Jilin, China
40. Department of Gastroenterology, The Second Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, China
41. Synaura Biotechnology (Shanghai) Co., Ltd., Shanghai, China
42. School of Public Health, University of Michigan, Ann Arbor, Michigan, USA
43. Institute of Soil Science, Chinese Academy of Sciences, Nanjing, Jiangsu, China
44. School of Art and Archaeology of Zhejiang University, Zhejiang, China
45. College of Animal Science and Technology, Guangxi University, Nanning, China
46. Fujian Provincial Key Laboratory for Subtropical Resources and Environment, Fujian Normal University, Fuzhou, China
47. College of Energy and Environmental Engineering, Hebei University of Engineering, Handan, Hebei, China
48. HaploX Biotechnology, Shenzhen, China
49. College of Life Sciences, Henan Agricultural University, Zhengzhou, China
50. College of Life Science, Nankai University, Tianjin, China
51. Jiangxi Province Key Laboratory of Sustainable Utilization of Traditional Chinese Medicine Resources, Institute of Traditional Chinese Medicine Health Industry, China Academy of Chinese Medical Sciences, Jiangxi, China
52. Beijing Key Laboratory of Emerging Infectious Diseases, Institute of Infectious Diseases, Beijing Ditan Hospital, Capital Medical University, Beijing, China
53. State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, Anhui, China
54. School of Life Sciences and Food Technology, Hanshan Normal University, Chaozhou, China
55. Tsinghua University, Beijing, China
56. State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
57. Department of Life Sciences, Imperial College of London, London, UK
58. State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, Centre for Grassland Microbiome, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, Gansu, China
59. Department of Oncology, The Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, Guangdong, China
60. National-Local Joint Engineering Research Center of Biomass Refining and High-Quality Utilization, Institute of Urban and Rural Mining, Changzhou University, Changzhou, Jiangsu, China
61. Department of Pathology, Affiliated Cancer Hospital of Zhengzhou University, Zhengzhou, China
62. Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
63. College of Water Sciences, Beijing Normal University, Beijing, China
64. Deyang People's Hospital, Deyang, Sichuan, China
65. New Direction Biotechnology (Tianjin) Co., Ltd, Tianjin, China
66. College of Energy and Environmental Engineering, Hebei Key Laboratory of Air Pollution Cause and Impact, Hebei University of Engineering, Handan, China
67. Institute of Botany, Chinese Academy of Sciences, Beijing, China
68. Institute of Biotechnology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
69. National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Jiangsu, China
70. College of Animal Science, Anhui Science and Technology University, Chuzhou, China
71. State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
72. State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, China
73. China CDC Key Laboratory of Environment and Population Health, National Institute of Environmental Health, Chinese Center for Disease Control and Prevention, Beijing, China
74. College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China
75. Key Laboratory of Agro-Ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha, China
76. Institute of Ecological Conservation and Restoration, Chinese Academy of Forestry, Beijing, China
77. State Key Laboratory for Ecological Security of Regions and Cities, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
78. Center of Liver Diseases Division 3, Beijing Ditan Hospital, Capital Medical University, Beijing, China
79. State Key Laboratory for Biology of Plant Diseases and Insect Pests, Key Laboratory of Invasive Alien Species Control of Ministry of Agriculture and Rural Affairs, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
80. Guangzhou University of Chinese Medicine, Guangzhou, China
81. Key Laboratory of Livestock Biology, Northwest A&F University, Yangling, Shaanxi, China
82. College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
83. CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
84. School of Food Science and Technology, Shihezi University, Shihezi, Xinjiang, China
85. College of Biochemical Engineering, Beijing Union University, Beijing, China
86. College of Resources and Environmental Sciences, Henan Agricultural University, Zhengzhou, China
87. Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, Zhejiang, China
88. College of Environmental Science and Engineering, Tongji University, Shanghai, China
89. Zhanjiang Key Laboratory of Human Microecology and Clinical Translation Research, the Marine Biomedical Research Institute, College of Basic Medicine, Guangdong Medical University, Zhanjiang, Guangdong, China
90. State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, China
91. School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou, Guangdong, China
92. Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China
93. School of Traditional Chinese Medicine, Southern Medical University, Guangzhou, Guangdong, China
94. Department of Animal Sciences, Purdue University, West Lafayette, Indiana, USA
95. College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, China
96. LifeX Institute, School of Medical Technology, Gannan Medical University, Ganzhou, China
97. Faculty of Data Science, City University of Macau, Macau, China
98. Jiangxi Provincial Key Laboratory of Conservation Biology, College of Forestry, Jiangxi Agricultural University, Nanchang, Jiangxi, China
chentong_biology@163.com
taowen@njau.edu.cn
chen@haplox.com
guoliangli2016@gmail.com
gaoyunyun@caas.cn
liuyongxin@caas.cn
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