EGDB: A comprehensive multi-omics database for energy grasses and the epigenomic atlas of pearl millet

Lin Luo; Dongmei Lin; Jinhui Li; Hao Chen; Qi Qu; Lin Zhang; Yuan Luo; Jiaming Chen; Dingkun Jiang; Peitao Lü; Wenjun Zhu; Hui Lin; Ensi Shao; Haidong Yan; Yarong Jin; Guodong Lu; Zhanxi Lin; LuLu Xun; Fangjie Zhu; Linkai Huang; Jiajing Xiao

doi:10.1002/imt2.263

iMeta ›› 2025, Vol. 4 ›› Issue (1) :e263 DOI: 10.1002/imt2.263

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EGDB: A comprehensive multi-omics database for energy grasses and the epigenomic atlas of pearl millet

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Lin Luo, Dongmei Lin, Jinhui Li, Hao Chen, Qi Qu, Lin Zhang, Yuan Luo, Jiaming Chen, Dingkun Jiang, Peitao Lü, Wenjun Zhu, Hui Lin, Ensi Shao, Haidong Yan, Yarong Jin, Guodong Lu, Zhanxi Lin, LuLu Xun, Fangjie Zhu, Linkai Huang, Jiajing Xiao. EGDB: A comprehensive multi-omics database for energy grasses and the epigenomic atlas of pearl millet. iMeta, 2025, 4(1): e263 DOI:10.1002/imt2.263

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References

Publishing order | Descend order by publishing year | Descend order by cited within

[1]	Lask, Jan, Elena Magenau, Andrea Ferrarini, Andreas Kiesel, Moritz Wagner, and Iris Lewandowski. 2020. “Perennial Rhizomatous Grasses: Can They Really Increase Species Richness and Abundance in Arable Land?−A Meta-Analysis.” GCB Bioenergy 12: 968-978. https://doi.org/10.1111/gcbb.12750

[2]	Yu, Ziyue, Fan Zhang, Chenzhen Gao, Eugenio Mangi, and Cheshmehzangi Ali. 2024. “The Potential for Bioenergy Generated on Marginal Land to Offset Agricultural Greenhouse Gas Emissions in China.” Renewable and Sustainable Energy Reviews 189: 113924. https://doi.org/10.1016/j.rser.2023.113924

[3]	Bai, Yongfei, and M. Francesca Cotrufo. 2022. “Grassland Soil Carbon Sequestration: Current Understanding, Challenges, and Solutions.” Science 377: 603-608. https://doi.org/10.1126/science.abo2380

[4]	Næss, Jan Sandstad, Otavio Cavalett, and Francesco Cherubini. 2021. “The Land-Energy-Water Nexus of Global Bioenergy Potentials From Abandoned Cropland.” Nature Sustainability 4: 525-536. https://doi.org/10.1038/s41893-020-00680-5

[5]	Wen, Chenjin, Zhen Yuan, Xiaotian Zhang, Hao Chen, Lin Luo, Wanying Li, Tian Li, et al. 2023. “Sea-ATI Unravels Novel Vocabularies of Plant Active Cistrome.” Nucleic Acids Research 51: 11568-11583. https://doi.org/10.1093/nar/gkad853

[6]	Li, Yin, Weizhen Liu, Xingtan Zhang, Shouchuang Wang, Ramin Yadegari, and Jianping Wang. 2023. “Editorial: Advances in Crop Biomass Production Based on Multi-Omics Approach.” Frontiers in Plant Science 14: 1155442. https://doi.org/10.3389/fpls.2023.1155442

[7]	Zhao, Lun, Liang Xie, Qing Zhang, Weizhi Ouyang, Li Deng, Pengpeng Guan, Meng Ma, et al. 2020. “Integrative Analysis of Reference Epigenomes in 20 Rice Varieties.” Nature Communications 11: 2658. https://doi.org/10.1038/s41467-020-16457-5

[8]	Zhang, Qing, Pengpeng Guan, Lun Zhao, Meng Ma, Liang Xie, Yue Li, Ruiqin Zheng, et al. 2021. “Asymmetric Epigenome Maps of Subgenomes Reveal Imbalanced Transcription and Distinct Evolutionary Trends in Brassica napus.” Molecular Plant 14: 604-619. https://doi.org/10.1016/j.molp.2020.12.020

[9]	Li, Zijuan, Meiyue Wang, Kande Lin, Yilin Xie, Jingyu Guo, Luhuan Ye, Yili Zhuang, et al. 2019. “The Bread Wheat Epigenomic Map Reveals Distinct Chromatin Architectural and Evolutionary Features of Functional Genetic Elements.” Genome Biology 20: 139. https://doi.org/10.1186/s13059-019-1746-8

[10]	Sun, Min, Haidong Yan, Aling Zhang, Yarong Jin, Chuang Lin, Lin Luo, Bingchao Wu, et al. 2023. “Milletdb: A Multi-Omics Database to Accelerate the Research of Functional Genomics and Molecular Breeding of Millets.” Plant Biotechnology Journal 21: 2348-2357. https://doi.org/10.1111/pbi.14136

[11]	Yan, Haidong, Min Sun, Zhongren Zhang, Yarong Jin, Ailing Zhang, Chuang Lin, Bingchao Wu, et al. 2023. “Pangenomic Analysis Identifies Structural Variation Associated with Heat Tolerance in Pearl Millet.” Nature Genetics 55: 507-518. https://doi.org/10.1038/s41588-023-01302-4

[12]	Marand, Alexandre P., Andrea L. Eveland, Kerstin Kaufmann, and Nathan M. Springer. 2023. “cis-Regulatory Elements in Plant Development, Adaptation, and Evolution.” Annual Review of Plant Biology 74: 111-137. https://doi.org/10.1146/annurev-arplant-070122-030236

[13]	Satyavathi, C. Tara, Supriya Ambawat, Vikas Khandelwal, and Rakesh K. Srivastava. 2021. “Pearl Millet: A Climate-Resilient Nutricereal for Mitigating Hidden Hunger and Provide Nutritional Security.” Frontiers in Plant Science 12: 659938. https://doi.org/10.3389/fpls.2021.659938

[14]

Li, Zijuan, Yuyun Zhang, Ci-Hang Ding, Yan Chen, Haoyu Wang, Jinyu Zhang, Songbei Ying, et al. 2023. “LHP1-Mediated Epigenetic Buffering of Subgenome Diversity and Defense Responses Confers Genome Plasticity and Adaptability in Allopolyploid Wheat.” Nature Communications 14: 7538. https://doi.org/10.1038/s41467-023-43178-2

[15]	Shi, Xiaoli, Changqing Zhang, Dae Kwan Ko, and Z. Jeffrey Chen. 2015. “Genome-Wide Dosage-Dependent and -Independent Regulation Contributes to Gene Expression and Evolutionary Novelty in Plant Polyploids.” Molecular Biology and Evolution 32: 2351-2366. https://doi.org/10.1093/molbev/msv116