OmicShare tools: A zero-code interactive online platform for biological data analysis and visualization

References

[1] Nagalakshmi, Ugrappa, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, and Michael Snyder. 2008. “The Transcriptional Landscape of the Yeast Genome Defined By RNA Sequencing.” Science 320: 1344-1349. https://doi.org/10.1126/science.1158441

[2] Ren, Yi, Guo Yu, Caiping Shi, Linmeng Liu, Quan Guo, Chang Han, Dan Zhang, et al. 2022. “Majorbio Cloud: A One-Stop, Comprehensive Bioinformatic Platform for Multiomics Analyses.” iMeta 1: e12. https://doi.org/10.1002/imt2.12

[3] Shen, Weitao, Ziguang Song, Xiao Zhong, Mei Huang, Danting Shen, Pingping Gao, Xiaoqian Qian, et al. 2022. “Sangerbox: A Comprehensive, Interaction-Friendly Clinical Bioinformatics Analysis Platform.” iMeta 1: e36. https://doi.org/10.1002/imt2.36

[4] Chen, Tong, Yong-Xin Liu, and Luqi Huang. 2022. “ImageGP: An Easy-to-Use Data Visualization Web Server for Scientific Researchers.” iMeta 1: e5. https://doi.org/10.1002/imt2.5

[5] Gao, Yunyun, Guoxing Zhang, Shunyao Jiang, and Yong-Xin Liu. 2024. “Wekemo Bioincloud: A User-Friendly Platform for Meta-Omics Data Analyses.” iMeta 3: e175. https://doi.org/10.1002/imt2.175

[6] Yang, Mei, Tong Chen, Yong-Xin Liu, and Luqi Huang. 2024. “Visualizing Set Relationships: EVenn's Comprehensive Approach to Venn Diagrams.” iMeta 3: e184. https://doi.org/10.1002/imt2.184

[7] Chen, Chengjie, Ya Wu, and Rui Xia. 2022. “A Painless Way to Customize Circos Plot: From Data Preparation to Visualization Using TBtools.” iMeta 1: e35. https://doi.org/10.1002/imt2.35

[8] Gu, Zuguang. 2022. “Complex Heatmap Visualization.” iMeta 1: e43. https://doi.org/10.1002/imt2.43

[9] Gao, Chun-Hui, Chengjie Chen, Turgut Akyol, Adrian Dusa, Guangchuang Yu, Bin Cao, and Peng Cai. 2024. “ggVennDiagram: Intuitive Venn Diagram Software Extended.” iMeta 3: e177. https://doi.org/10.1002/imt2.177

[10] Chen, Chengjie, Hao Chen, Yi Zhang, Hannah R. Thomas, Margaret H. Frank, Yehua He, and Rui Xia. 2020. “TBtools: an Integrative Toolkit Developed for Interactive Analyses of Big Biological Data.” Molecular Plant 13: 1194-1202. https://doi.org/10.1016/j.molp.2020.06.009

[11] Lan, Cong, Caiyu Chen, Shuang Qu, Nian Cao, Hao Luo, Cheng Yu, Na Wang, et al. 2022. “Inhibition of DYRK1A, Via Histone Modification, Promotes Cardiomyocyte Cell Cycle Activation and Cardiac Repair after Myocardial Infarction.” EBioMedicine 82: 104139. https://doi.org/10.1016/j.ebiom.2022.104139

[12] Huang, Yan, Min Qin, Jinlong Lai, Juncheng Liang, Xuegang Luo, and Chen Li. 2023. “Assessing OBT Formation and Enrichment: ROS Signaling Is Involved in the Radiation Hormesis Induced By Tritium Exposure in Algae.” Journal of Hazardous Materials 443: 130159. https://doi.org/10.1016/j.jhazmat.2022.130159

[13] Zhang, Fuyang, Guangyu Hu, Xiyao Chen, Ling Zhang, Lanyan Guo, Congye Li, Hang Zhao, et al. 2022. “Excessive Branched-Chain Amino Acid Accumulation Restricts Mesenchymal Stem Cell-Based Therapy Efficacy in Myocardial Infarction.” Signal Transduction and Targeted Therapy 7: 171. https://doi.org/10.1038/s41392-022-00971-7

[14] Lai, Jin-Long, Zhan-Guo Li, Yi Wang, Hai-Ling Xi, and Xue-Gang Luo. 2023. “Tritium and Carbon-14 Contamination Reshaping the Microbial Community Structure, Metabolic Network, and Element Cycle in the Seawater Environment.” Environmental Science & Technology 57: 5305-5316. https://doi.org/10.1021/acs.est.3c00422

[15] Liu, Jingjing, Wanghui Jing, Tianyu Wang, Zhe Hu, and Haitao Lu. 2023. “Functional Metabolomics Revealed the Dual-Activation of cAMP-AMP Axis Is a Novel Therapeutic Target of Pancreatic Cancer.” Pharmacological Research 187: 106554. https://doi.org/10.1016/j.phrs.2022.106554

[16] Fu, Qian, Jin-Long Lai, Xiao-Hui Ji, Zhong-Xu Luo, Guo Wu, and Xue-Gang Luo. 2022. “Alterations of the Rhizosphere Soil Microbial Community Composition and Metabolite Profiles of Zea Mays By Polyethylene-Particles of Different Molecular Weights.” Journal of Hazardous Materials 423: 127062. https://doi.org/10.1016/j.jhazmat.2021.127062

[17] Zhang, Hao, Xiaonan Gou, Liangchuan Ma, Xiaojun Zhang, Jianzhou Qu, Xiaoyue Wang, Wenjie Huang, et al. 2024. “Reveal the Kernel Dehydration Mechanisms in Maize Based on Proteomic and Metabolomic Analysis.” BMC Plant Biology 24(1): 15. https://doi.org/10.1186/s12870-023-04692-z

[18] Liu, Wenqian, Qing Wang, Ruoyan Zhang, Mengshuang Liu, Cuicui Wang, Zixi Liu, Chenggang Xiang, et al. 2022. “Rootstock-Scion Exchanging mRNAs Participate in the Pathways of Amino Acid and Fatty Acid Metabolism in Cucumber under Early Chilling Stress.” Horticulture Research 9: uhac031. https://doi.org/10.1093/hr/uhac031

[19] Zhang, Tao, Dong Yan, Zhongqiang Ji, Xiufei Chen, and Liyan Yu. 2022. “A Comprehensive Assessment of Fungal Communities in Various Habitats From an Ice-Free Area of Maritime Antarctica: Diversity, Distribution, and Ecological Trait.” Environmental Microbiome 17: 54. https://doi.org/10.1186/s40793-022-00450-0

[20] Zheng, Sheng, Yi-Wang Wang, Jin-Long Lai, Yu Zhang, and Xue-Gang Luo. 2023. “Effects of Long-Term Herbaceous Plant Restoration on Microbial Communities and Metabolic Profiles in Coal Gangue-Contaminated Soil.” Environmental Research 234: 116491. https://doi.org/10.1016/j.envres.2023.116491

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