Deciphering the near-complete genome and conducting pan-genome analysis of Brassica oleracea

Abstract

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Acknowledgments

This work was supported by the National Natural Science Foundation of China (32172583), S&T Program of Tangshan (24130219C), Hebei Province Higher Education Institutions Science and Technology Research Project (BJK2023022), and Tangshan Normal University Research Project (20256111019).

Authors contributions

X.S. and Q.L. conceived the project and was responsible for the initiation of the project. X.S., Q.L., X.M., and Y.S. supervised and managed the project and research. Data generation and collection were performed by Q.L., Y.F., X.M., Y.W., Y.Z., G.Z., Y.D., L.G., and S.A. Bioinformatics analysis was led by X.S., C.Z., Y.F., and X.M. The manuscript was organized, written, and revised by X.S., Q.L., Y.F., C.Z., X.M., and Y.S. All the authors read and revised the manuscript.

Data availability

All genome and annotated data related to this study are available in our TBGR database (http://www.tbgr.org.cn) [3].

Conflict of interest statement:

The authors declare no competing interests.

References

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[2] Guo N, Wang S, Wang T. et al. A graph-based pan-genome of Brassica oleracea provides new insights into its domestication and morphotype diversification. Plant Commun. 2024; 5:100791

[3] LiuZ, LiN, YuT. et al. The Brassicaceae genome resource (TBGR): a comprehensive genome platform for Brassicaceae plants. Plant Physiol. 2022; 190:226-37

[4] Feng S, Liu Z, Chen H. et al. PHGD: an integrative and user-friendly database for plant hormone-related genes. iMeta. 2024; 3:e164

[5] Wang X, Wang H, Wang J. et al. The genome of the mesopolyploid crop species Brassica rapa. Nat Genet. 2011; 43:1035-9