Molecular genetic diagnosis of autosomal dominant polycystic kidney disease – A systematic review

Natalie Ciantar , Edith Said

Global Medical Genetics ›› 2026, Vol. 13 ›› Issue (02) : 100099

PDF (1049KB)
Global Medical Genetics ›› 2026, Vol. 13 ›› Issue (02) :100099 DOI: 10.1016/j.gmg.2026.100099
Research article
research-article
Molecular genetic diagnosis of autosomal dominant polycystic kidney disease – A systematic review
Author information +
History +
PDF (1049KB)

Abstract

Background: Autosomal dominant polycystic kidney disease (ADPKD) is a genetically heterogeneous disorder primarily caused by pathogenic variants in PKD1 and PKD2. Although molecular testing has revolutionized diagnosis, variability persists in testing strategies and diagnostic yields. This review aims to evaluate molecular genetic techniques used in ADPKD diagnosis and summarize evidence on their diagnostic performance. Method: Following a predefined protocol and PRISMA 2020 guidelines, PubMed, Scopus, and Web of Science were searched for studies published between January 2015 and August 2025. Eligible studies included ≥ 30 clinically diagnosed ADPKD participants and reported patient-level diagnostic data. Two investigators independently extracted information on testing methods, diagnostic yield, and identified genes. Results: From 23,718 records, 20 studies met inclusion criteria, with sample sizes ranging from 32 to 634 participants. Diagnostic methods included Sanger sequencing (SS), multiplex ligand-probe amplification (MLPA), long-range PCR (LR-PCR), targeted next-generation sequencing (NGS) panels, whole-exome sequencing (WES), and whole-genome sequencing (WGS). Detection rates ranged from 61% (LR-PCR) to 92% (targeted NGS). PKD1 and PKD2 variants accounted for 79.9% and 15.9% of cases, respectively. Additional variants were identified in GANAB, HNF1B, IFT140, PRKCSH, and PKHD1. Conclusion: Targeted NGS panels provided the highest diagnostic accuracy and cost-effectiveness for ADPKD. Complementary use of MLPA and LR-PCR improved detection of complex variants. Further optimization of sequencing workflows and variant interpretation will enhance diagnostic precision and clinical application. This review provides an evidence-based foundation for current diagnostic practices in ADPKD.

Keywords

ADPKD / Polycystic kidney / Autosomal dominant / Genotyping / PKD1 / PKD2

Cite this article

Download citation ▾
Natalie Ciantar, Edith Said. Molecular genetic diagnosis of autosomal dominant polycystic kidney disease – A systematic review. Global Medical Genetics, 2026, 13 (02) : 100099 DOI:10.1016/j.gmg.2026.100099

登录浏览全文

4963

注册一个新账户 忘记密码

CRediT authorship contribution statement

N.C. and E.S. contributed equally to this work. Conceptualization, E.S.; methodology, N.C. and E.S.; literature search and data extraction, N.C. and E.S.; formal analysis, N.C. and E.S.; writing—original draft preparation, N.C. and E.S.; writing—review and editing, N.C. and E.S.; visualization, N.C. and E.S.; supervision, N.C. All authors have read and agreed to the published version of the manuscript.

Institutional review board statement

Not applicable

Funding

None

Declaration of Competing Interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Appendix A. Supporting information

Supplementary data associated with this article can be found in the online version at doi:10.1016/j.gmg.2026.100099.

References

[1]

F.T. Chebib, V.E. Torres, Autosomal dominant polycystic kidney disease: core curriculum 2016, Am. J. Kidney Dis. 67 (5) (2016) 792-810, https://doi.org/10.1053/j.ajkd.2015.07.037

[2]

E. Cornec—Le Gall, M.P. Audrezet, J.M. Chen, M. Hourmant, M.P. Morin, R. Perrichot, C. Charasse, B. Whebe, E. Renaudineau, P. Jousset, et al., Type of PKD1 Mutation influences renal outcome in ADPKD, J. Am. Soc. Nephrol. 24 (6) (2013) 1006-1013, https://doi.org/10.1681/ASN.2012070650

[3]

E.M. Spithoven, A. Kramer, E. Meijer, B. Orskov, C. Wanner, J.M. Abad, N. Aresté, R.A. de la Torre, F. Caskey, C. Cauchoud, et al., Renal replacement therapy for autosomal dominant polycystic kidney disease (ADPKD) in Europe: prevalence and survival—an analysis of data from the ERA—EDTA registry, Nephrol. Dial. Transpl. 29 (4) (2014) iv15-iv25, https://doi.org/10.1093/ndt/gfu017

[4]

E. Cornec—Le Gall, V.E. Torres, P.C. Harris, Genetic complexity of autosomal dominant polycystic kidney and liver diseases, J. Am. Soc. Nephrol. 29 (1) (2018) 13-23, https://doi.org/10.1681/ASN.2017050483

[5]

The European Polycystic Kidney Disease Consortium, The Polycystic Kidney Disease 1 Gene Encodes a 14 kb Transcript and Lies within a Duplicated Region on Chromosome 16, Cell 77 (6) (1994) 881-894, https://doi.org/10.1016/0092—8674(94)90137—6

[6]

T. Mochizuki, G. Wu, T. Hayashi, S.L. Xenophontos, B. Veldhuisen, J.J. Saris, D.M. Reynolds, Y. Cai, P.A. Gabow, A. Pierides, et al., PKD2, a gene for polycystic kidney disease that encodes an integral membrane protein, Science 272 (5266) (1996) 1339-1342, https://doi.org/10.1126/science.272.5266.1339

[7]

B. Porath, V.G. Gainullin, E. Cornec—Le Gall, E.K. Dillinger, C.M. Heyer, K. Hopp, M.E. Edwards, C.D. Madsen, S.R. Mauritz, C.J. Banks, et al., Mutations in GANAB, encoding the glucosidase iiα subunit, cause autosomal—dominant polycystic kidney and liver disease, Am. J. Hum. Genet 98 (6) (2016) 1193-1207, https://doi.org/10.1016/j.ajhg.2016.05.004

[8]

W. Besse, A.R. Chang, J.Z. Luo, W.J. Triffo, B.S. Moore, A. Gulati, D.N. Hartzel, S. Mane, V.E. Torres, S. Somlo, T. Mirshahi, ALG9 mutation carriers develop kidney and liver cysts, J. Am. Soc. Nephrol. 30 (11) (2019) 2091-2102, https://doi.org/10.1681/ASN.2019030298

[9]

S.R. Senum, Y.S.M. Li, K.A. Benson, G. Joli, E. Olinger, S. Lavu, C.D. Madsen, A.V. Gregory, R. Neatu, T.L. Kline, et al., Monoallelic IFT140 pathogenic variants are an important cause of the autosomal dominant polycystic kidney—spectrum phenotype, Am. J. Hum. Genet 109 (1) (2022) 136-156, https://doi.org/10.1016/j.ajhg.2021.11.016

[10]

F. Sanger, S. Nicklen, A.R. Coulson, DNA sequencing with chain—terminating inhibitors, Proc. Natl. Acad. Sci. USA 74 (12) (1977) 5463-5467, https://doi.org/10.1073/pnas.74.12.5463

[11]

C.A. Hutchison III, DNA sequencing: bench to bedside and beyond, Nucleic Acids Res. 35 (18) (2007) 6227-6237, https://doi.org/10.1093/nar/gkm688

[12]

S. Behjati, P.S. Tarpey, What is next generation sequencing? Arch. Dis. Child. Educ. Pract. Ed. 98 (6) (2013) 236-238, https://doi.org/10.1136/archdischild—2013—304340

[13]

Y. Tan, A. Michaeel, J. Blumenfeld, S. Donahue, T. Parker, D. Levine, H. Rennert, A Novel Long—Range PCR Sequencing Method for Genetic Analysis of the Entire PKD1 Gene, J. Mol. Diagn. 14 (4) (2012) 305-313, https://doi.org/10.1016/j.jmoldx.2012.02.007

[14]

H. Ali, F. Al—Mulla, N. Hussain, M. Naim, A.M. Asbeutah, A. AlSahow, M. Abu—Farha, J. Abubaker, A. Al Madhoun, S. Ahmad, P.C. Harris, PKD1 duplicated regions limit clinical utility of whole—exome sequencing for genetic diagnosis of ADPKD, Sci. Rep. 9 (1) (2019) 4141, https://doi.org/10.1038/s41598—019—40761—w

[15]

M.B. Lanktree, A. Haghighi, I. di Bari, X. Song, Y. Pei, Insights into autosomal dominant polycystic kidney disease from genetic studies, Clin. J. Am. Soc. Nephrol. 16 (5) (2021) 790-799, https://doi.org/10.2215/CJN.02320220

[16]

E. Cornec—Le Gall, P.C. Harris, The Underestimated Burden of Monogenic Diseases in Adult—Onset ESRD, J. Am. Soc. Nephrol. 29 (6) (2018) 1583-1584, https://doi.org/10.1681/ASN.2018040441

[17]

A.C. Mallawaarachchi, Y. Hort, M.J. Cowley, M.J. McCabe, A. Minoche, M.E. Dinger, J. Shine, T.J. Furlong, Whole—Genome Sequencing Overcomes Pseudogene Homology to Diagnose ADPKD, Eur. J. Hum. Genet 24 (11) (2016) 1584-1590, https://doi.org/10.1038/ejhg.2016.48

[18]

H.L. Rehm, S.J. Bale, P. Bayrak—Toydemir, J.S. Berg, K.K. Brown, J.L. Deignan, M.J. Friez, B.H. Funke, M.R. Hegde, E. Lyon, ACMG Clinical Laboratory Standards for Next—Generation Sequencing, Genet. Med. 15 (9) (2013) 733-747, https://doi.org/10.1038/gim.2013.92

[19]

S.E. Wallace, Genetic Testing: Current Approaches, National Center for Biotechnology Information (US), Bethesda, MD, 2018https://www.ncbi.nlm.nih.gov/books/NBK279899/#app5.Multigene_Panels〉.

[20]

C.J. Bell, D.L. Dinwiddie, N.A. Miller, S.L. Hateley, E.E. Ganusova, J. Mudge, R.J. Langley, L. Zhang, C.C. Lee, F.D. Schilkey, et al., Carrier Testing for Severe Childhood Recessive Diseases by Next—Generation Sequencing, Sci. Transl. Med. 3 (65) (2011) 65ra4, https://doi.org/10.1126/scitranslmed.3001756

[21]

C. Yu, A. Lee, S. Kohl, M. Lin, S.M. Cheng, C. Hung, J. Chang, Y. Chiu, S. Hwang, E.A. Otto, et al., PKD2 Founder Mutation Is the Most Common Mutation of Polycystic Kidney Disease in Taiwan, NPJ Genom. Med. 7 (1) (2022) 40, https://doi.org/10.1038/s41525—022—00309—w

[22]

A.C. Mallawaarachchi, B. Lundie, Y. Hort, N. Schonrock, S.R. Senum, V. Gayevskiy, A.E. Minoche, G. Hollway, T. Ohnesorg, M. Hinchcliffe, C. Patel, M. Tchan, A. Mallett, M.E. Dinger, G. Rangan, M.J. Cowley, P.C. Harris, L. Burnett, J. Shine, T.J. Furlong, Genomic Diagnostics in Polycystic Kidney Disease: An Assessment of Real—World Use of Whole—Genome Sequencing, Eur. J. Hum. Genet 29 (5) (2021) 760-770, https://doi.org/10.1038/s41431—020—00796—4

[23]

L.K. Conlin, E. Aref—Eshghi, D.A. McEldrew, M. Luo, R. Rajagopalan, Long—Read Sequencing for Molecular Diagnostics in Constitutional Genetic Disorders, Hum. Mutat. 43 (11) (2022) 1531-1544, https://doi.org/10.1002/humu.24465

[24]

P. Carrera, S. Calzavara, R. Magistroni, J.T. den Dunnen, F. Rigo, S. Stenirri, F. Testa, P. Messa, R. Cerutti, F. Scolari, C. Izzi, A. Edefonti, S. Negrisolo, E. Benetti, M.T. Alibrandi, P. Manunta, A. Boletta, M. Ferrari, Deciphering Variability of PKD1 and PKD2 in an Italian Cohort of 643 Patients with Autosomal Dominant Polycystic Kidney Disease (ADPKD), Sci. Rep. 6 (2016) 30850, https://doi.org/10.1038/srep30850

[25]

C.H. Lindemann, A. Wenzel, F. Erger, L. Middelmann, J. Borde, E. Hahnen, D. Krauß, S. Oehm, S. Arjune, P. Todorova, K. Burgmaier, M.C. Liebau, F. Grundmann, B.B. Beck, R.U. Müller, A low—cost sequencing platform for rapid genotyping in ADPKD and its impact on clinical care, Kidney Int. Rep. 8 (3) (2022) 455-466, https://doi.org/10.1016/j.ekir.2022.12.025

[26]

C.C. Yu, A.F. Lee, S. Kohl, M.Y. Lin, S.M. Cheng, C.C. Hung, J.M. Chang, Y.W. Chiu, S.J. Hwang, E.A. Otto, F. Hildebrandt, Taiwan PKD Consortium, D.Y. Hwang, PKD2 Founder Mutation Is the Most Common Mutation of Polycystic Kidney Disease in Taiwan , NPJ Genom. Med. 7 (1) (2022) 40, https://doi.org/10.1038/s41525—022—00309—w

[27]

Q. Sun, P. Xu, A. Mao, S. Huang, J. Li, L. Chen, J. Li, H. Kan, J. Huang, W. Ji, D. Si, J. Yan, Z.J. Chen, X. Gao, Y. Gao, Targeted Long—Read Sequencing Enables Higher Diagnostic Yield of ADPKD by Accurate PKD1 Genetic Analysis, NPJ Genom. Med. 10 (1) (2025) 22, https://doi.org/10.1038/s41525—025—00477—5

[28]

A.R. Chang, B.S. Moore, J.Z. Luo, G. Sartori, B. Fang, S. Jacobs, Y. Abdalla, M. Taher, D.J. Carey, W.J. Triffo, G. Singh, T. Mirshahi, Exome Sequencing of a Clinical Population for Autosomal Dominant Polycystic Kidney Disease, JAMA 328 (24) (2022) 2412-2421, https://doi.org/10.1001/jama.2022.22847

[29]

D. Clark, R. Burns, M.S. Bloom, K.P.H. Lim, L. Li, L.M. Vincent, J. Xie, Y. Xue, S. Punj, Heterozygous Loss—of—Function Variants in IFT140 Are Associated with Polycystic Kidney Disease, Am. J. Med. Genet. Part A 194 (12) (2024) e63841, https://doi.org/10.1002/ajmg.a.63841

[30]

S. Raj, R.G. Singh, P. Das, Mutational Screening of PKD2 Gene in North Indian Polycystic Kidney Disease Patients Revealed 28 Genetic Variations, J. Genet 96 (6) (2017) 885-893, https://doi.org/10.1007/s12041—017—0824—5

[31]

M. Abdelwahed, P. Hilbert, A. Ahmed, M. Dey, S. Bouomrani, H. Kamoun, L. Ammar—Keskes, N. Belguith, Autosomal dominant polycystic kidney disease (ADPKD) in Tunisia: from molecular genetics to the development of prognostic tools, Gene 817 (2022) 146174, https://doi.org/10.1016/j.gene.2021.146174

[32]

M.D. Elliott, L.C. James, E.L. Simms, P. Sharma, L.P. Girard, K. Cheema, M.J. Elliott, J.L. Lauzon, J. Chun, Mainstreaming genetic testing for adult patients with autosomal dominant polycystic kidney disease, Can. J. Kidney Health Dis. 8 (2021) 20543581211055001, https://doi.org/10.1177/20543581211055001

[33]

W. Li, G. Liu, X. Zhao, Y. Lu, H. Li, H. Zhang, G. Lin, Genetic testing, ultrasonography and preimplantation genetic testing of men with ADPKD in Hunan, China, Andrologia 54 (1) (2022) e14273, https://doi.org/10.1111/and.14273

[34]

M. Rafiee, M. Razipour, M. Keramatipour, J. Roozbeh, M. Entezam, Genetic Analysis of Autosomal Dominant Polycystic Kidney Disease in Iranian Families: A Combined Sanger and Next—Generation Sequencing Study (in press.), J. Appl. Genet (2025), https://doi.org/10.1007/s13353—024—00937—1

[35]

Y.H. Hwang, J. Conklin, W. Chan, N.M. Roslin, J. Liu, N. He, K. Wang, J.L. Sundsbak, C.M. Heyer, M. Haider, A.D. Paterson, P.C. Harris, Y. Pei, Refining Genotype—Phenotype Correlation in Autosomal Dominant Polycystic Kidney Disease, J. Am. Soc. Nephrol. 27 (6) (2016) 1861-1868, https://doi.org/10.1681/ASN.2015060648

[36]

W.B. He, W.J. Xiao, Y.Q. Tan, X.M. Zhao, W. Li, Q.J. Zhang, C.G. Zhong, X.R. Li, L. Hu, G.X. Lu, G. Lin, J. Du, Novel Mutations of PKD Genes in Chinese Patients Suffering from Autosomal Dominant Polycystic Kidney Disease and Seeking Assisted Reproduction, BMC Med. Genet 19 (1) (2018) 186, https://doi.org/10.1186/s12881—018—0693—7

[37]

S. Orisio, M. Noris, M. Rigoldi, E. Bresin, N. Perico, M. Trillini, R. Donadelli, A. Perna, A. Benigni, G. Remuzzi, Mutation Analysis of PKD1 and PKD2 Genes in a Large Italian Cohort Reveals Novel Pathogenic Variants Including a Novel Complex Rearrangement, Nephron 148 (5) (2024) 273-291, https://doi.org/10.1159/000530657

[38]

D. Brazdziunaite, G. Mazur, A. Kerpauskiene, R. Cerkauskiene, L. Vareikiene, M. Miglinas, A. Utkus, Genetic Characterization of Lithuanian Patients with Cystic Kidney (in press), Clin. Genet (2025), https://doi.org/10.1111/cge.70036

[39]

V. Mantovani, S. Bin, C. Graziano, I. Capelli, R. Minardi, V. Aiello, E. Ambrosini, C.P. Cristalli, A. Mattiaccio, M. Pariali, S. De Fanti, F. Faletra, E. Grosso, R. Cantone, E. Mancini, F. Mencarelli, A. Pasini, A. Wischmeijer, N. Sciascia, M. Seri, G. La Manna, Gene panel analysis in a large cohort of patients with autosomal dominant polycystic kidney disease allows the identification of 80 potentially causative novel variants and the characterization of a complex genetic architecture in a subset of families, Front. Genet 11 (2020) 464, https://doi.org/10.3389/fgene.2020.00464

[40]

T. Wang, Q. Li, S. Shang, G. Geng, Y. Xie, G. Cai, X. Chen, Identifying gene mutations of chinese patients with polycystic kidney disease through targeted next—generation sequencing technology, Mol. Genet. Genom. Med. 7 (6) (2019) e720, https://doi.org/10.1002/mgg3.720

[41]

H. Ali, M. Naim, S.R. Senum, A. AlSahow, Y. Bahbahani, M. Abu—Farha, J. Abubaker, A. Mohammad, A. Al—Hunayan, A.M. Asbeutah, M. Zayed, S. Devarajan, N. Hussain, S.E. John, A. Channanath, T.A. Thanaraj, M. Al—Ali, M. AlMousawi, F. Al—Mulla, P.C. Harris, The genetic landscape of autosomal dominant polycystic kidney disease in Kuwait, Clin. Kidney J. 16 (2) (2022) 355-366, https://doi.org/10.1093/ckj/sfac236

[42]

A. Domingo—Gallego, M. Pybus, G. Bullich, M. Furlano, L. Ejarque—Vila, L. Lorente—Grandoso, P. Ruiz, G. Fraga, M. López González, J.A. Piñero—Fernández, L. Rodríguez—Peña, I. Llano—Rivas, R. Sáez, A. Bujons—Tur, G. Ariceta, L. Guirado, R. Torra, E. Ars, Clinical Utility of Genetic Testing in Early—Onset Kidney Disease: Seven Genes Are the Main Players, Nephrol. Dial. Transpl. 37 (4) (2022) 687-696, https://doi.org/10.1093/ndt/gfab019

[43]

E.A.E. Elhassan, S.L. Murray, D.M. Connaughton, C. Kennedy, S. Cormican, C. Cowhig, C. Stapleton, M.A. Little, K. Kidd, A.J. Bleyer, M. Živná, S. Kmoch, N.K. Fennelly, B. Doyle, A. Dorman, M.D. Griffin, L. Casserly, P.C. Harris, F. Hildebrandt, G.L. Cavalleri, K.A. Benson, P.J. Conlon, The utility of a genetic kidney disease clinic employing a broad range of genomic testing platforms: experience of the irish kidney gene project, J. Nephrol. 35 (6) (2022) 1655-1665, https://doi.org/10.1007/s40620—021—01236—2

[44]

M. Hosseinpour, F. Ardalani, M. Mohseni, M. Beheshtian, S. Arzhangi, S. Ossareh, H. Najmabadi, A. Nobakht, K. Kahrizi, B. Broumand, Targeted Next Generation Sequencing Revealed Novel Variants in the PKD1 and PKD2 Genes of Iranian Patients with Autosomal Dominant Polycystic Kidney Disease, Arch. Iran. Med. 25 (9) (2022) 600-608, https://doi.org/10.34172/aim.2022.95

[45]

E. Nigro, M. Amicone, D. D’Arco, G. Sellitti, O. De Marco, M. Guarino, E. Riccio, A. Pisani, A. Daniele, Molecular Diagnosis and Identification of Novel Pathogenic Variants in a Large Cohort of Italian Patients Affected by Polycystic Kidney Diseases, Genes (Basel) 14 (6) (2023) 1236, https://doi.org/10.3390/genes14061236

[46]

N. Ciantar, G. Zahra, J. Delicata, F. Sammut, J. Calleja—Agius, E. Farrugia, E. Said, Genotype—Phenotype of Autosomal Dominant Polycystic Kidney Disease in Malta, Eur. J. Med. Genet 69 (2024) 104934, https://doi.org/10.1016/j.ejmg.2024.104934

[47]

C. Dordoni, L. Zeni, D. Toso, C. Mazza, F. Mescia, R. Cortinovis, L. Econimo, G. Savoldi, F. Alberici, F. Scolari, C. Izzi, Monoallelic Pathogenic IFT140 Variants Are a Common Cause of Autosomal Dominant Polycystic Kidney Disease—Spectrum Phenotype, Clin. Kidney J. 17 (2) (2024) sfae026, https://doi.org/10.1093/ckj/sfae026

[48]

Y. Suzuki, K. Katayama, R. Saiki, Y. Hirabayashi, T. Murata, E. Ishikawa, M. Ito, K. Dohi, Mutation analysis of autosomal—dominant polycystic kidney disease patients, Genes 14 (2) (2023) 443, https://doi.org/10.3390/genes14020443

PDF (1049KB)

0

Accesses

0

Citation

Detail

Sections
Recommended

/