Kinetics of the exchange reaction catalyzed by 2-amino-3- ketobutyrate CoA ligase

Farrukh Jamil

Front. Biol. ›› 2015, Vol. 10 ›› Issue (6) : 503 -507.

PDF (370KB)
Front. Biol. ›› 2015, Vol. 10 ›› Issue (6) : 503 -507. DOI: 10.1007/s11515-015-1378-7
RESEARCH ARTICLE
RESEARCH ARTICLE

Kinetics of the exchange reaction catalyzed by 2-amino-3- ketobutyrate CoA ligase

Author information +
History +
PDF (370KB)

Abstract

2-Amino-3-ketobutyrate CoA ligase (KBL) of Escherichia coli is a member of the α-oxoamine synthase family; it catalyzes the condensation reaction between glycine and acetyl CoA to yield 2-amino-3-ketobutyrate. We have previously shown that KBL catalyzes the exchange of pro-R hydrogen of glycine with protons in the medium; however, the kinetics of this reaction has never been determined. In this study, we calculated the kinetic parameters of this exchange reaction by using different concentrations of [2RS- 3H2: 2-14C] glycine. The rate of the exchange reaction was determined by measuring the 3H/14C ratio in recovered [2S- 3H: 2-14C]glycine. The Lineweaver-Burk plot showed that Km and kcat of this reaction were 3.8 ×10-3 M and 0.22 S-1, respectively. On the other hand, Km and kcat values of the overall KBL-mediated catalysis were correspondingly 1.23 × 10-2 M and 1.19 S-1. Thus, the rate of the exchange reaction was almost five times lower than that of overall KBL catalysis.

Keywords

enzyme / 2-amino-3-ketobutyrate CoA ligase / kinetics / exchange reaction

Cite this article

Download citation ▾
Farrukh Jamil. Kinetics of the exchange reaction catalyzed by 2-amino-3- ketobutyrate CoA ligase. Front. Biol., 2015, 10(6): 503-507 DOI:10.1007/s11515-015-1378-7

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Alexeev DAlexeeva MBaxter R LCampopiano D JWebster S PSawyer L (1998). The crystal structure of 8-amino-7-oxononanoate synthase: a bacterial PLP-dependent, acyl-CoA-condensing enzyme. J Mol Biol284(2): 401–419

[2]

Bashir QRashid NAkhtar M (2006). Mechanism and substrate stereochemistry of 2-amino-3-oxobutyrate CoA ligase: implications for 5-aminolevulinate synthase and related enzymes. Chem Commun (Camb), (48): 5065–5067

[3]

Edgar A JPolak J M (2000). Molecular cloning of the human and murine 2-amino-3-ketobutyrate coenzyme A ligase cDNAs. Eur J Biochem267(6): 1805–1812

[4]

Gable KSlife HBacikova DMonaghan EDunn T M (2000). Tsc3p is an 80-amino acid protein associated with serine palmitoyltransferase and required for optimal enzyme activity. J Biol Chem275(11): 7597–7603

[5]

Gibson K DLaver W GNeuberger A (1958). Initial stages in the biosynthesis of porphyrins. 2. The formation of delta-aminolaevulic acid from glycine and succinyl-coenzyme A by particles from chicken erythrocytes. Biochem J70(1): 71–81

[6]

Hanada KHara TFukasawa MYamaji AUmeda MNishijima M (1998). Mammalian cell mutants resistant to a sphingomyelin-directed cytolysin. Genetic and biochemical evidence for complex formation of the LCB1 protein with the LCB2 protein for serine palmitoyltransferase. J Biol Chem273(50): 33787–33794

[7]

Hanada KHara TNishijima M (2000). Purification of the serine palmitoyltransferase complex responsible for sphingoid base synthesis by using affinity peptide chromatography techniques. J Biol Chem275(12): 8409–8415

[8]

Jamil FGardner Q ABashir QRashid NAkhtar M (2010). Mechanistic and stereochemical studies of glycine oxidase from Bacillus subtilis strain R5. Biochemistry49(34): 7377–7383

[9]

Kerbarh OCampopiano D JBaxter R L (2006). Mechanism of -oxoamine synthases: identification of the intermediate Claisen product in the 8-amino-7-oxononanoate synthase reaction. Chem. Comm, 60–62

[10]

Marcus J PDekker E E (1993). Threonine formation via the coupled activity of 2-amino-3-ketobutyrate coenzyme A lyase and threonine dehydrogenase. J Bacteriol175(20): 6505–6511

[11]

Mukherjee J JDekker E E (1987). Purification, properties, and N-terminal amino acid sequence of homogeneous Escherichia coli 2-amino-3-ketobutyrate CoA ligase, a pyridoxal phosphate-dependent enzyme. J Biol Chem262(30): 14441–14447

[12]

Ploux OMarquet A (1996). Mechanistic studies on the 8-amino-7-oxopelargonate synthase, a pyridoxal-5′-phosphate-dependent enzyme involved in biotin biosynthesis. Eur J Biochem236(1): 301–308

[13]

Riddle R DYamamoto MEngel J D (1989). Expression of d-aminolevulinate synthase in avian cells: separate genes encode erythroid-specific and nonspecific isozymes. Proc Natl Acad Sci USA86(3): 792–796

[14]

Schmidt ASivaraman JLi YLarocque RBarbosa J ASmith CMatte ASchrag J DCygler M (2001). Three-dimensional structure of 2-amino-3-ketobutyrate CoA ligase from Escherichia coli complexed with a PLP-substrate intermediate: inferred reaction mechanism. Biochemistry40(17): 5151–5160

RIGHTS & PERMISSIONS

Higher Education Press and Springer-Verlag Berlin Heidelberg

AI Summary AI Mindmap
PDF (370KB)

Supplementary files

FIB-10378-OF-FJ_suppl_1

659

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/