Unlocking the potential of whole-profile carbon sequestration in agricultural soils

Zhongkui LUO , Mingming WANG , Guocheng WANG

Front. Earth Sci. ›› 2026, Vol. 20 ›› Issue (1) : 39 -47.

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Front. Earth Sci. ›› 2026, Vol. 20 ›› Issue (1) :39 -47. DOI: 10.1007/s11707-025-1168-8
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Unlocking the potential of whole-profile carbon sequestration in agricultural soils
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Abstract

Agricultural soils have great potential to sequester carbon, mitigating climate change while enhancing soil health. Subsoil layers are particularly promising for long-term carbon storage due to their lower carbon density and slower carbon turnover compared to topsoil. The reduced subsoil carbon density primarily results from limited carbon inputs at depth, while slower turnover is driven by 1) stronger physiochemical constraints on microbial decomposition, and 2) limited availability of high-quality, energy-rich substrates. These factors underscore the opportunities to target management practices that either increase carbon inputs to subsoil layers or reduce carbon turnover rates to enhance subsoil carbon sequestration. Advancing this field requires understanding the vertical distribution of carbon input quality and quantity, as well as the processes driven vertical carbon transport within soil profiles. Additionally, it is critical to elucidate how substrate properties (e.g., energy and nutrient content) and vertical environmental constraints (e.g., hydrothermal regimes and oxygen availability) influence microbial efficiency. Addressing these knowledge gaps will enable the design of effective management practices, unlocking the full potential of whole-profile carbon sequestration in agricultural systems.

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Keywords

carbon sequestration / carbon turnover / carbon input / agricultural soils / subsoil

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Zhongkui LUO, Mingming WANG, Guocheng WANG. Unlocking the potential of whole-profile carbon sequestration in agricultural soils. Front. Earth Sci., 2026, 20(1): 39-47 DOI:10.1007/s11707-025-1168-8

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References

[1]

Allison S D, Martiny J B (2008). Resistance, resilience, and redundancy in microbial communities.Proc Natl Acad Sci USA, 105(supplement_1): 11512–11519

[2]

Amarnath K, Narla A V, Pontrelli S, Dong J, Reddan J, Taylor B R, Caglar T, Schwartzman J, Sauer U, Cordero O X, Hwa T (2023). Stress-induced metabolic exchanges between complementary bacterial types underly a dynamic mechanism of inter-species stress resistance.Nat Commun, 14(1): 3165

[3]

Angers D, Eriksen-Hamel N (2008). Full-inversion tillage and organic carbon distribution in soil profiles: a meta-analysis.Soil Sci Soc Am J, 72(5): 1370–1374

[4]

Batjes N H, Ribeiro E, van Oostrum A (2020). Standardised soil profile data to support global mapping and modelling (WoSIS snapshot 2019).Earth Syst Sci Data, 12(1): 299–320

[5]

Begill N, Don A, Poeplau C (2023). No detectable upper limit of mineral-associated organic carbon in temperate agricultural soils.Glob Change Biol, 29(16): 4662–4669

[6]

Blossfeld S, Gansert D, Thiele B, Kuhn A J, Lösch R (2011). The dynamics of oxygen concentration, pH value, and organic acids in the rhizosphere of Juncus spp.Soil Biol Biochem, 43(6): 1186–1197

[7]

Blouin M, Hodson M E, Delgado E A, Baker G, Brussaard L, Butt K R, Dai J, Dendooven L, Pérès G, Tondoh J, Cluzeau D, Brun J J (2013). A review of earthworm impact on soil function and ecosystem services.Eur J Soil Sci, 64(2): 161–182

[8]

Bordoli J M, Mallarino A P (1998). Deep and shallow banding of phosphorus and potassium as alternatives to broadcast fertilization for no-till corn.Agron J, 90(1): 27–33

[9]

Busch W, Miller C (2022). The greenest revolution – harnessing the power of plants to help combat climate change.Biochemist (Lond), 44(3): 13–18

[10]

Buss W, Hasemer H, Sokol N W, Rohling E J, Borevitz J (2024). Applying minerals to soil to draw down atmospheric carbon dioxide through synergistic organic and inorganic pathways.Commun Earth Environ, 5(1): 602

[11]

Button E S, Pett-Ridge J, Murphy D V, Kuzyakov Y, Chadwick D R, Jones D L (2022). Deep-C storage: biological, chemical and physical strategies to enhance carbon stocks in agricultural subsoils.Soil Biol Biochem, 170: 108697

[12]

Canarini A, Schmidt H, Fuchslueger L, Martin V, Herbold C W, Zezula D, Gündler P, Hasibeder R, Jecmenica M, Bahn M, Richter A (2021). Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community.Nat Commun, 12(1): 5308

[13]

Celestina C, Hunt J R, Sale P W, Franks A E (2019). Attribution of crop yield responses to application of organic amendments: a critical review.Soil Tillage Res, 186: 135–145

[14]

Chen Y J, Leung P M, Wood J L, Bay S K, Hugenholtz P, Kessler A J, Shelley G, Waite D W, Franks A E, Cook P L M, Greening C (2021). Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem.ISME J, 15(10): 2986–3004

[15]

Cooper V S, Lenski R E (2000). The population genetics of ecological specialization in evolving Escherichia coli populations.Nature, 407(6805): 736–739

[16]

Cotrufo M, Ranalli M G, Haddix M L, Six J, Lugato E (2019). Soil carbon storage informed by particulate and mineral-associated organic matter.Nat Geosci, 12(12): 989–994

[17]

Doetterl S, Berhe A A, Nadeu E, Wang Z G, Sommer M, Fiener P (2016). Erosion, deposition and soil carbon: a review of process-level controls, experimental tools and models to address C cycling in dynamic landscapes.Earth Sci Rev, 154: 102–122

[18]

Dove N C, Barnes M E, Moreland K, Graham R C, Berhe A A, Hart S C (2021). Depth dependence of climatic controls on soil microbial community activity and composition.ISME Commun, 1(1): 78

[19]

Eckardt N A, Ainsworth E A, Bahuguna R N, Broadley M R, Busch W, Carpita N C, Castrillo G, Chory J, DeHaan L R, Duarte C M, Henry A, Jagadish S V K, Langdale J A, Leakey A D B, Liao J C, Lu K J, McCann M C, McKay J K, Odeny D A, Jorge de Oliveira E, Platten J D, Rabbi I, Rim E Y, Ronald P C, Salt D E, Shigenaga A M, Wang E, Wolfe M, Zhang X (2023). Climate change challenges, plant science solutions.Plant Cell, 35(1): 24–66

[20]

Elnahal A S, El-Saadony M T, Saad A M, Desoky E S M, El-Tahan A M, Rady M M, AbuQamar S F, El-Tarabily K A (2022). The use of microbial inoculants for biological control, plant growth promotion, and sustainable agriculture: a review.Eur J Plant Pathol, 162(4): 759–792

[21]

Fierer N, Schimel J P, Holden P A (2003). Variations in microbial community composition through two soil depth profiles.Soil Biol Biochem, 35(1): 167–176

[22]

Fontaine S, Barot S, Barré P, Bdioui N, Mary B, Rumpel C (2007). Stability of organic carbon in deep soil layers controlled by fresh carbon supply.Nature, 450(7167): 277–280

[23]

García-Palacios P, Bradford M A, Benavente-Ferraces I, de Celis M, Delgado-Baquerizo M, García-Gil J C, Gaitán J J, Goñi-Urtiaga A, Mueller C W, Panettieri M, Rey A, Sáez-Sandino T, Schuur E A G, Sokol N W, Tedersoo L, Plaza C (2024). Dominance of particulate organic carbon in top mineral soils in cold regions.Nat Geosci, 17(2): 145–150

[24]

Garland G, Edlinger A, Banerjee S, Degrune F, García-Palacios P, Pescador D S, Herzog C, Romdhane S, Saghai A, Spor A, Wagg C, Hallin S, Maestre F T, Philippot L, Rillig M C, van der Heijden M G A (2021). Crop cover is more important than rotational diversity for soil multifunctionality and cereal yields in European cropping systems.Nat Food, 2(1): 28–37

[25]

Gaudaré U, Kuhnert M, Smith P, Martin M, Barbieri P, Pellerin S, Nesme T (2023). Soil organic carbon stocks potentially at risk of decline with organic farming expansion.Nat Clim Chang, 13(7): 719–725

[26]

Georgiou K, Jackson R B, Vindušková O, Abramoff R Z, Ahlström A, Feng W, Harden J W, Pellegrini A F A, Polley H W, Soong J L, Riley W J, Torn M S (2022). Global stocks and capacity of mineral-associated soil organic carbon.Nat Commun, 13(1): 3797

[27]

Gregorich E, Greer K, Anderson D, Liang B (1998). Carbon distribution and losses: erosion and deposition effects.Soil Tillage Res, 47(3−4): 291–302

[28]

Guidi C, Frey B, Brunner I, Meusburger K, Vogel M E, Chen X, Stucky T, Gwiazdowicz D J, Skubala P, Bose A K, Schaub M, Rigling A, Hagedorn F (2022). Soil fauna drives vertical redistribution of soil organic carbon in a long-term irrigated dry pine forest.Glob Change Biol, 28(9): 3145–3160

[29]

Jobbágy E G, Jackson R B (2000). The vertical distribution of soil organic carbon and its relation to climate and vegetation.Ecol Appl, 10(2): 423–436

[30]

Jurburg S D, Nunes I, Brejnrod A, Jacquiod S, Priemé A, Sørensen S J, Van Elsas J D, Salles J F (2017). Legacy effects on the recovery of soil bacterial communities from extreme temperature perturbation.Front Microbiol, 8: 1823

[31]

Kaiser K, Kalbitz K (2012). Cycling downwards - dissolved organic matter in soils.Soil Biol Biochem, 52: 29–32

[32]

Kang E, Li Y, Zhang X, Yan Z, Wu H, Li M, Yan L, Zhang K, Wang J, Kang X (2021). Soil pH and nutrients shape the vertical distribution of microbial communities in an alpine wetland.Sci Total Environ, 774: 145780

[33]

Kang J, Qu C, Chen W, Cai P, Chen C, Huang Q (2024). Organo–organic interactions dominantly drive soil organic carbon accrual.Glob Change Biol, 30(1): e17147

[34]

Karhu K, Hilasvuori E, Fritze H, Biasi C, Nykänen H, Liski J, Vanhala P, Heinonsalo J, Pumpanen J (2016). Priming effect increases with depth in a boreal forest soil.Soil Biol Biochem, 99: 104–107

[35]

Kirschbaum M U, Don A, Beare M H, Hedley M J, Pereira R C, Curtin D, McNally S R, Lawrence-Smith E J (2021). Sequestration of soil carbon by burying it deeper within the profile: a theoretical exploration of three possible mechanisms.Soil Biol Biochem, 163: 108432

[36]

Kleber M, Bourg I C, Coward E K, Hansel C M, Myneni S C B, Nunan N (2021). Dynamic interactions at the mineral–organic matter interface.Nat Rev Earth Environ, 2(6): 402–421

[37]

Lal R (2005). Soil erosion and carbon dynamics.Soil Tillage Res, 81(2): 137–142

[38]

Lawrence-Smith E J, Curtin D, Beare M H, McNally S R, Kelliher F M, Calvelo Pereira R, Hedley M J (2021). Full inversion tillage during pasture renewal to increase soil carbon storage: New Zealand as a case study.Glob Change Biol, 27(10): 1998–2010

[39]

Li Y, Chen Z, Chen J, Castellano M J, Ye C, Zhang N, Miao Y, Zheng H, Li J, Ding W (2022). Oxygen availability regulates the quality of soil dissolved organic matter by mediating microbial metabolism and iron oxidation.Glob Chang Biol, 28: 7410–7427

[40]

Liu L, Zhou W, Guan K, Peng B, Xu S, Tang J, Zhu Q, Till J, Jia X, Jiang C, Wang S, Qin Z, Kong H, Grant R, Mezbahuddin S, Kumar V, Jin Z (2024). Knowledge-guided machine learning can improve carbon cycle quantification in agroecosystems.Nat Commun, 15(1): 357

[41]

Liu P, Yan H, Xu S, Lin X, Wang W, Wang D (2022). Moderately deep banding of phosphorus enhanced winter wheat yield by improving phosphorus availability, root spatial distribution, and growth.Soil Tillage Res, 220: 105388

[42]

Liu Q, Kawai T, Inukai Y, Aoki D, Feng Z, Xiao Y, Fukushima K, Lin X, Shi W, Busch W, Matsushita Y, Li B (2023). A lignin-derived material improves plant nutrient bioavailability and growth through its metal chelating capacity.Nat Commun, 14(1): 4866

[43]

Luo Z, Wang E, Sun O J (2010a). Can no-tillage stimulate carbon sequestration in agricultural soils? A meta-analysis of paired experiments.Agric Ecosyst Environ, 139(1−2): 224–231

[44]

Luo Z, Wang E, Sun O J (2010b). Soil carbon change and its responses to agricultural practices in Australian agro-ecosystems: a review and synthesis.Geoderma, 155(3−4): 211–223

[45]

Luo Z, Wang G, Wang E (2019). Global subsoil organic carbon turnover times dominantly controlled by soil properties rather than climate.Nat Commun, 10(1): 3688

[46]

Luo Z, Zhang S, Zhao Z, Minasny B, Chang J, Huang J, Li B, Shi Z, Wang E, Wang M, Wu Y, Xiao L, Ye S (2024). Soil-smart cropping for climate-smart production.Geoderma, 451: 117061

[47]

Lynch J P, Mooney S J, Strock C F, Schneider H M (2022). Future roots for future soils.Plant Cell Environ, 45(3): 620–636

[48]

Mariappan S, Hartley I P, Cressey E L, Dungait J A J, Quine T A (2022). Soil burial reduces decomposition and offsets erosion-induced soil carbon losses in the Indian Himalaya.Glob Change Biol, 28(4): 1643–1658

[49]

Noyce G L, Smith A J, Kirwan M L, Rich R L, Megonigal J P (2023). Oxygen priming induced by elevated CO2 reduces carbon accumulation and methane emissions in coastal wetlands.Nat Geosci, 16(1): 63–68

[50]

Ortiz M, Leung P M, Shelley G, Jirapanjawat T, Nauer P A, Van Goethem M W, Bay S K, Islam Z F, Jordaan K, Vikram S, Chown S L, Hogg I D, Makhalanyane T P, Grinter R, Cowan D A, Greening C (2021). Multiple energy sources and metabolic strategies sustain microbial diversity in Antarctic desert soils.Proc Natl Acad Sci USA, 118(45): e2025322118

[51]

Owens J, Clough T J, Laubach J, Hunt J E, Venterea R T, Phillips R L (2016). Nitrous oxide fluxes, soil oxygen, and denitrification potential of urine-and non-urine-treated soil under different irrigation frequencies.J Environ Qual, 45(4): 1169–1177

[52]

Paustian K, Lehmann J, Ogle S, Reay D, Robertson G P, Smith P (2016). Climate-smart soils.Nature, 532(7597): 49–57

[53]

Ritchie J C, McCarty G W, Venteris E R, Kaspar T (2007). Soil and soil organic carbon redistribution on the landscape.Geomorphology, 89(1−2): 163–171

[54]

Sanderman J, Hengl T, Fiske G J (2017). Soil carbon debt of 12, 000 years of human land use.Proc Natl Acad Sci USA, 114(36): 9575–9580

[55]

Schmidt M W I, Torn M S, Abiven S, Dittmar T, Guggenberger G, Janssens I A, Kleber M, Kögel-Knabner I, Lehmann J, Manning D A C, Nannipieri P, Rasse D P, Weiner S, Trumbore S E (2011). Persistence of soil organic matter as an ecosystem property.Nature, 478(7367): 49–56

[56]

Schweizer S A, Mueller C W, Höschen C, Ivanov P, Kögel-Knabner I (2021). The role of clay content and mineral surface area for soil organic carbon storage in an arable toposequence.Biogeochemistry, 156(3): 401–420

[57]

Shi Z, Allison S D, He Y, Levine P A, Hoyt A M, Beem-Miller J, Zhu Q, Wieder W R, Trumbore S, Randerson J T (2020). The age distribution of global soil carbon inferred from radiocarbon measurements.Nat Geosci, 13(8): 555–559

[58]

Sierra C A, Ahrens B, Bolinder M A, Braakhekke M C, von Fromm S, Kätterer T, Luo Z, Parvin N, Wang G (2024). Carbon sequestration in the subsoil and the time required to stabilize carbon for climate change mitigation.Glob Change Biol, 30(1): e17153

[59]

Sierra C A, Muller M, Metzler H, Manzoni S, Trumbore S E (2017). The muddle of ages, turnover, transit, and residence times in the carbon cycle.Glob Change Biol, 23(5): 1763–1773

[60]

Skole D L, Mbow C, Mugabowindekwe M, Brandt M S, Samek J H (2021). Trees outside of forests as natural climate solutions.Nat Clim Chang, 11(12): 1013–1016

[61]

Sun T, Wang Y, Hui D, Jing X, Feng W (2020). Soil properties rather than climate and ecosystem type control the vertical variations of soil organic carbon, microbial carbon, and microbial quotient.Soil Biol Biochem, 148: 107905

[62]

Thomas E, Prabha V S, Kurien V T, Thomas A (2020). The potential of earthworms in soil carbon storage: a review.Environ Exp Biol, 18: 61–75

[63]

Tonneijck F H, Jongmans A G (2008). The influence of bioturbation on the vertical distribution of soil organic matter in volcanic ash soils: a case study in northern Ecuador.Eur J Soil Sci, 59(6): 1063–1075

[64]

van Noordwijk M, Coe R, Sinclair F L, Luedeling E, Bayala J, Muthuri C W, Cooper P, Kindt R, Duguma L, Lamanna C, Minang P A (2021). Climate change adaptation in and through agroforestry: four decades of research initiated by Peter Huxley.Mitig Adapt Strategies Glob Change, 26(5): 18

[65]

Wang G Wang M, Xiao L, Sierra C A, Chang J, Shi Z, Luo Z (2024). Fast transit of carbon inputs in global soil profiles regardless of entering depth.Earth's Future, 12: e2023EF003982

[66]

Wang G, Xiao L, Lin Z, Zhang Q, Guo X, Cowie A, Zhang S, Wang M, Chen S, Zhang G, Shi Z, Sun W, Luo Z (2023). Most root-derived carbon inputs do not contribute to long-term global soil carbon storage.Sci China Earth Sci, 66(5): 1072–1086

[67]

Weng Z, Van Zwieten L, Singh B P, Tavakkoli E, Joseph S, Macdonald L M, Rose T J, Rose M T, Kimber S W L, Morris S, Cozzolino D, Araujo J R, Archanjo B S, Cowie A (2017). Biochar built soil carbon over a decade by stabilizing rhizodeposits.Nat Clim Chang, 7: 371–376

[68]

Werth M, Kuzyakov Y (2010). 13C fractionation at the root–microorganisms–soil interface: a review and outlook for partitioning studies.Soil Biol Biochem, 42(9): 1372–1384

[69]

Wordell-Dietrich P, Wotte A, Rethemeyer J, Bachmann J, Helfrich M, Kirfel K, Leuschner C, Don A (2020). Vertical partitioning of CO2 production in a forest soil.Biogeosciences, 17(24): 6341–6356

[70]

Xiao L, Wang G, Chang J, Chen Y, Guo X, Mao X, Wang M, Zhang S, Shi Z, Luo Y, Cheng L, Yu K, Mo F, Luo Z (2023a). Global depth distribution of belowground net primary productivity and its drivers.Glob Ecol Biogeogr, 32(8): 1435–1451

[71]

Xiao L, Wang G, Wang E, Liu S, Chang J, Zhang P, Zhou H, Wei Y, Zhang H, Zhu Y, Shi Z, Luo Z (2024). Spatiotemporal co-optimization of agricultural management practices towards climate-smart crop production.Nat Food, 5(1): 59–71

[72]

Xiao L, Wang G, Wang M, Zhang S, Sierra C A, Guo X, Chang J, Shi Z, Luo Z (2022). Younger carbon dominates global soil carbon efflux.Glob Change Biol, 28(18): 5587–5599

[73]

Xiao L J, Wang G C, Chang J F, Chen Y Y, Guo X W, Mao X L, Wang M M, Zhang S, Shi Z, Luo Y Q, Cheng L, Yu K L, Mo F, Luo Z K (2023b). Global depth distribution of belowground net primary productivity and its drivers.Glob Ecol Biogeogr, 32(8): 1435–1451

[74]

Yang H, Zhou J, Feng J, Zhai S, Chen W, Liu J, Bian X (20192019. Chapter Five - Ditch-buried straw return: a novel tillage practice combined with tillage rotation and deep ploughing in rice-wheat rotation systems. In: Sparks D L, ed. Advances in Agronomy. Academic Press, 257–290

[75]

Zeglin L H (2015). Stream microbial diversity in response to environmental changes: review and synthesis of existing research.Front Microbiol, 6: 454

[76]

Zhu F, Lin X, Guan S, Dou S (2022). Deep incorporation of corn straw benefits soil organic carbon and microbial community composition in a black soil of Northeast China.Soil Use Manage, 38(2): 1266–1279

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