1. Aarts M G M, Dirkse W G, Stiekema W J, Pereira A (1993). Transposon tagging of a male sterility gene in Arabidopsis. Nature, 363(6431): 715–717. doi:10.1038/363715a0
2. Alleman M, Freeling M (1986). The Mu transposable elements of maize: evidencefor transposition and copy number regulation during development. Genetics, 112(1): 107–119
3. Alleman M, Sidorenko L, McGinnis K, Seshadri V, Dorweiler J E, White J, Sikkink K, Chandler V L (2006). An RNA-dependentRNA polymerase is required for paramutation in maize. Nature, 442(7100): 265–298. doi:10.1038/nature04884
4. Ambrose B A, Lerner D R, Ciceri P, Padilla C M, Yanofsky M F, Schmidt R J (2000). Molecular and genetic analyses ofthe Silky1 gene reveal conservationin floral organ specification between eudicots and monocots. Mol Cell, 5(3): 569–579. doi:10.1016/S1097-2765(00)80450-5
5. Barker R F, Thompson D V, Talbot D R, Swanson J, Bennetzen J L (1984). Nucleotidesequence of the maize transposable element Mu1. Nucleic Acids Res, 12(15): 5955–5967. doi:10.1093/nar/12.15.5955
6. Becraft P W, Freeling M (1994). Geneticanalysis of Rough sheath1 developmentalmutants of maize. Genetics, 136(1): 295–311
7. Becraft P W, Stinard P S, McCarty D R (1996). CRINKLY4: A TNFR-Like receptor kinaseinvolved in maize epidermal differentiation. Science, 273(5280): 1406–1409. doi:10.1126/science.273.5280.1406
8. Benito M I, Walbot V (1997). Characterizationof the maize Mutator transposableelement MURA transposase as a DNA-binding protein. Mol Cell Biol, 17(9): 5165–5175
9. Bennetzen J L (1996). The Mutator transposableelement system of maize. Curr Top MicrobiolImmunol, 204(1): 195–229
10. Bennetzen J L (2005). Transposable elements, gene creation and genome rearrangementin flowering plants. Curr Opin Genet Dev, 15(6): 621–627. doi:10.1016/j.gde.2005.09.010
11. Bennetzen J L, Springer P S, Cresse A D, Hendrickx M (1993). Specificity and regulation of the Mutator transposable element system in maize. Crit Rev Plant Sci, 12(1): 57–95. doi:10.1080/713608042
12. Bensen R J, Johal G S, Crane V C, Tossberg J T, Schnable P S, Meeley R B, Briggs S P (1995). Cloning and characterization of the maize An1 gene. Plant Cell, 7(1): 75–84. doi:10.1105/tpc.7.1.75
13. Blauth S L, Kim K N, Klucinec J, Shannon J C, Thompson D, Guiltinan M (2002). Identification of Mutator insertional mutants of starch-branchingenzyme 1 (sbe1) in Zea mays L. Plant Mol Biol, 48(3): 287–297. doi:10.1023/A:1013335217744
14. Blauth S L, Yao Y, Klucinec J D, Shannon J C, Thompson D B, Guilitinan M J (2001). Identification of Mutator insertional mutants of starch-branchingenzyme 2a in corn. Plant Physiol, 125(3): 1396–1405. doi:10.1104/pp.125.3.1396
15. Bommert P, Lunde C, Nardmann J, Vollbrecht E, Running M, Jackson D, Hake S, Werr W (2005). Thick tassel dwarf1 encodes a putative maize orthologof the Arabidopsis CLAVATA1 leucine-richrepeat receptor-like kinase. Development, 132(6): 1235–1245. doi:10.1242/dev.01671
16. Brutnell T P (2002). Transposon tagging in maize. Funct Integr Genomics, 2(1): 4–12. doi:10.1007/s10142-001-0044-0
17. Brutnell T P, Sawers R J H, Mant A, Langdale J A (1999). BUNDLE SHEATH DEFECTIVE2, a novel protein required forpost-translational regulation of the rbcL gene of maize. Plant Cell, 11(5): 849–864. doi:10.1105/tpc.11.5.849
18. Buckner B, Kelson T L, Robertson D S (1990). Cloning of the y1 locus of maize, a gene involved in the biosynthesisof carotenoids. Plant Cell, 2(9): 867–876. doi:10.1105/tpc.2.9.867
19. Carey C C, Strahle J T, Selinger D A, Chandler V L (2004). Mutations in the pale aleuronecolor1 regulatory gene of the Zeamays anthocyanin pathway have distinct phenotypes relativeto the functionally similar TRANSPARENT TESTAGLABRA1 gene in Arabidopsis thaliana. Plant Cell, 16(2): 450–464. doi:10.1105/tpc.018796
20. Chalvet F, Grimaldi C, Kaper F, Langin T, Daboussi M J (2003). Hop, an active Mutator-like element in the genome of the fungus Fusarium oxysporum. Mol BiolEvol, 20(8): 1362–1375. doi:10.1093/molbev/msg155
21. Chandler V L, Walbot V (1986). DNA modificationof a maize transposable element correlates with loss of activity. Proc Natl Acad Sci USA, 83(6): 1767–1771. doi:10.1073/pnas.83.6.1767
22. Ching A, Dhugga K S, Appenzeller L, Meeley R, Bourett T M, Howard R J, Rafalski A (2006). Brittle stalk 2 encodes a putative glycosylphosphatidylinositol-anchoredprotein that affects mechanical strength of maize tissues by alteringthe composition and structure of secondary cell walls. Planta, 224(5): 1174–1184. doi:10.1007/s00425-006-0299-8
23. da Costa e Silva O, Lorbiecke R, Garg P, Müller L, Waβmann M, Lauert P, Scanlon M, Hsia A P, Schnable P S, Krupinska K, Wienand U (2004). The Etched1 gene of Zeamays L. encodes a zinc ribbon protein that belongs to thetranscriptionally active chromosome (TAC) of plasmids and is similarto the transcription factor TFII S. PlantJ, 38(6): 923–939. doi:10.1111/j.1365-313X.2004.02094.x
24. Diao X M, Freeling M, Lisch D R (2006). Horizontal transfer of a plant transposon. PLoS Biol, 4(1): e5. doi: 10.1371/journal.pbio.0040005
25. Dooner H K, Weil C F (2007). Give-and-take:interactions between DNA transposons and their host plant genomes. Curr Opin Genet Dev, 17(1): 1–7. doi:10.1016/j.gde.2006.12.013
26. Edwards D, Coghill J, Batley J, Holdsworth M, Edwards K J (2002). Amplificationand detection of transposon insertion flanking sequences using fluorescent MuAFLP. Biotechniques, 32(5): 1090–1097
27. Fedoroff N V (2001). How jumping genes were discovered. Nat Struct Biol, 8(4): 300–301. doi:10.1038/86161
28. Fisk D G, Walker M B, Barkan A (1999). Molecular cloning of the maize gene crp1 reveals similarity between regulatorsof mitochondrial and chloroplast gene expression. EMBO J, 18(9): 2621–2630. doi:10.1093/emboj/18.9.2621
29. Foster T, Yamaguchi J, Wong B C, Veit B, Hake S (1999). Gnarley1 is a dominant mutation in the knox4 homeobox gene affecting cell shapeand identity. Plant Cell, 11(7): 1239–1252. doi:10.1105/tpc.11.7.1239
30. Fu S, Meeley R, Scanlon M J (2002). empty pericarp2 encodes a negative regulator of the heat shock response and is requiredfor maize embryogenesis. Plant Cell, 14(12): 3119–3132. doi:10.1105/tpc.006726
31. Gao M, Wanat J, Stinard P S, James M G, Myers A M (1998). Characterizationof dull1, a maize gene coding fora novel starch synthase. Plant Cell, 10(3): 399–412. doi:10.1105/tpc.10.3.399
32. Gray J, Close P S, Briggs S P, Johal G S (1997). A novel suppressor of cell death in plants encoded by the Lls1 gene of maize. Cell, 89(1): 25–31. doi:10.1016/S0092-8674(00)80179-8
33. Gupta S, Gallavotti A, Stryker G A, Schmidt R J, Lal S K (2005). A novelclass of Helitron-related transposableelements in maize contain portions of multiple pseudogenes. Plant Mol Biol, 57(1): 115–127. doi:10.1007/s11103-004-6636-z
34. Han C, Coe E H Jr, Martienssen R A (1992). Molecular cloning and characterizationof iojap (ij), a pattern striping gene of maize. EMBO J, 11(11): 4037–4046
35. Hanley S, Edwards D, Stevenson D, Haines S, Hegarty M, Schuch W, Edwards K J (2000). Identificationof transposon-tagged genes by the random sequencing of Mutator-tagged DNA fragments from Zea mays. PlantJ, 22(6): 557–566. doi:10.1046/j.1365-313x.2000.00830.x
36. Hansen J D, Pyee J, Xia Y, Wen T J, Robertson D S, Kolattukudy P E, Nikolau B J, Schnable P S (1997). The glossy1 locus of maize and an epidermis-specificcDNA from KIeinia odora definea class of receotor-like proteins required for the normal accumulationof cuticular waxes. Plant Physiol, 113(4): 1091–1100. doi:10.1104/pp.113.4.1091
37. Hardeman K J, Chandler V L (1993). Two maizegenes are each targeted predominantly by distinct classes of Mu elements. Genetics, 135(4): 1141–1150
38. Hochholdinger F, Park W J, Feix G H (2001). Cooperative action of SLR1 and SLR2 is required for lateral root-specific cell elongation in maize. Plant Physiol, 125(3): 1529–1539. doi:10.1104/pp.125.3.1529
39. Hoen D R, Park K C, Elrouby N, Yu Z H, Mohabir N, Cowan R K, Bureau T E (2006). Transposon-mediatedexpansion and diversification of a family of ULP-like genes. Mol Biol Evol, 23(6): 1254–1268. doi:10.1093/molbev/msk015
40. Hu G S, Yalpani N, Briggs S P, Johal G S (1998). A porphyrin pathway impairment is responsible for the phenotype ofa dominant disease lesion mimic mutant of maize. Plant Cell, 10(7): 1095–1105. doi:10.1105/tpc.10.7.1095
41. James M G, Robertson D S, Myers A M (1995). Characterization of the maize gene sugary1, a determinant of starch compositionin kernels. Plant Cell, 7(4): 417–429. doi:10.1105/tpc.7.4.417
42. Jane Hershberger R, Benito M I, Hardeman K J, Warren C, Chandlert V L, Walbot V (1995). Characterization of the major transcriptsencoded by the regulatory MuDR transposableelement of maize. Genetics, 140(3): 1087–1098
43. Jeddeloh J A, Bender J, Richards E J (1998). The DNA methylation locus DDM1 is required for maintenance of genesilencing in Arabidopsis. Genes Dev, 12(11): 1714–1725. doi:10.1101/gad.12.11.1714
44. Jeong D H, An S, Kang H G, Moon S, Han J J, Park S, Lee H S, An K, An G (2002). T-DNA insertional mutagenesis for activation tagging in rice. Plant Physiol, 130(4): 1636–1644. doi:10.1104/pp.014357
45. Jiang N, Bao Z R, Zhang X Y, Eddy S R, Wessler S R (2004). Pack-MULE transposableelements mediate gene evolution in plants. Nature, 431(7008): 569–573. doi:10.1038/nature02953
46. Jones D A, Thomas C M, Hammond-Kosack K E, Balint-Kurti P J, Jones J D (1994). Isolationof the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging. Science, 266(5186): 789–793. doi:10.1126/science.7973631
47. Juretic N, Hoen D R, Huynh M L, Harrison P M, Bureau T E (2005). The evolutionaryfate of MULE-mediated duplications of host gene fragments in rice. Genome Res, 15(9): 1292–1297. doi:10.1101/gr.4064205
48. Keith Slotkin R, Freeling M, Lisch D R (2003). Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays. Genetics, 165(2): 781–797
49. Kumar C S, Wing R A, Sundaresan V (2005). Efficient insertional mutagenesisin rice using the maize En/Spm elements. Plant J, 44(5): 879–892. doi:10.1111/j.1365-313X.2005.02570.x
50. Lai J S, Li Y B, Messing J, Dooner H K (2005). Gene movement by Helitron transposonscontributes to the haplotype variability of maize. Proc Natl Acad Sci USA, 102(25): 9068–9073. doi:10.1073/pnas.0502923102
51. Lai J S, Ma J X, Swigoňová Z, Ramakrishna W, Linton E, Llaca V, Tanyolac B, Park Y J, Jeong O Y, Bennetzen J L, Messing J (2004). Geneloss and movement in the maize genome. Genome Res, 14(10): 1924–1931. doi:10.1101/gr.2701104
52. Lisch D R (2002). Mutator transposons. Trends Plant Sci, 7(11): 498–504. doi:10.1016/S1360-1385(02)02347-6
53. Lisch D R (2005). Pack-MULEs: theft on a massive scale. Bioessays, 27(4): 353–355. doi:10.1002/bies.20219
54. Lisch D R, Carey C C, Dorweiler J E, Chandler V L (2002). A mutation that prevents paramutation in maize alsoreverses Mutator transposon methylationand silencing. Proc Natl Acad Sci USA, 99(9): 6130–6135. doi:10.1073/pnas.052152199
55. Lisch D R, Chomet P, Freeling M (1995). Genetic characterization of the Mutator system in maize: behavior and regulationof Mu transposons in a minimalline. Genetics, 139(4): 1777–1796
56. Lisch D R, Freeling M, Langham R J, Choy M Y (2001). Mutator transposase is widespreadin the grasses. Plant Physiol, 125(3): 1293–1303.. doi: 10.1104/pp.125.3.1293
57. Lisch D R, Girard L, Donlin M, Freeling M (1999). Functional analysis of deletion derivatives of the maizetransposon MuDR delineates rolesfor the MURA and MURB proteins. Genetics, 151(1): 331–341
58. Lunde C F, Morrow D J, Roy L M, Walbot V (2003). Progress in maize gene discovery: a project update. Funct Integr Genomics, 3(1): 25–32
59. Martienssen R A, Barkan A, Freeling M, Taylor W C (1989). Molecular cloning of a maize gene involved in photosynthetic membraneorganization that is regulated by Robertson's Mutator. EMBO J, 8(6): 1633–1639
60. May B P, Liu H, Vollbrecht E, Senior L, Rabinowicz P D, Roh D, Pan X K, Stein L, Freeling M, Alexander D, Martienssen R A (2003). Maize-targeted mutagenesis: a knockoutresource for maize. Proc Natl Acad SciUSA, 100(20): 11541–11546. doi:10.1073/pnas.1831119100
61. McCarty D R, Carson C B, Stinard P S, Robertson D S (1989). Molecular analysis of viviparous-1: an abscisic acid insensitive mutant of maize. Plant Cell, 1(5): 523–532. doi:10.1105/tpc.1.5.523
62. McCarty D R, Mark Settles A, Suzuki M, Tan B C, Latshaw S, Porch T, Robin K, Baier J, Avigne W, Lai J S, Messing J, Koch K E, Curtis Hannah L (2005). Steady-state transposon mutagenesisin inbred maize. Plant J, 44(1): 52–61. doi:10.1111/j.1365-313X.2005.02509.x
63. McLaughlin M, Walbot V (1987). Cloningof a mutable bz2 allele of maizeby transposon tagging and differential hybridization. Genetics, 117(4): 771–776
64. Mena M, Ambrose B A, Meeley R B, Briggs S P, Yanofsky M F, Schmidt R J (1996). Diversification of C-function activity in maize flowerdevelopment. Science, 274(5292): 1537–1540. doi:10.1126/science.274.5292.1537
65. Muehlbauer G J, Fowler J E, Girard L, Tyers R, Harper L, Freeling M (1999). Ectopic expression of the maize homeobox gene Liguleless3 alters cell fates in the leaf. Plant Physiol, 119(2): 651–662. doi:10.1104/pp.119.2.651
66. Okamoto H, Hirochika H (2001). Silencingof transposable elements in plants. TrendsPlant Sci, 6(11): 527–534. doi:10.1016/S1360-1385(01)02105-7
67. Porch T G, Tseung C W, Schmelz E A, Mark Settles A (2006). The maize Viviparous10/Viviparous13 locus encodes the Cnx1 gene required for molybdenum cofactorbiosynthesis. Plant J, 45(2): 250–263. doi:10.1111/j.1365-313X.2005.02621.x
68. Robertson D S (1978). Characterization of a Mutator system in maize. Mutat Res, 51(1): 21–28
69. Robertson D S (1980). The timing of Mu activityin maize. Genetics, 94(4): 969–978
70. Rudenko G N, Walbot V (2001). Expressionand post-transcriptional regulation of maize transposable element MuDR and its derivatives. Plant Cell, 13(3): 553–570. doi:10.1105/tpc.13.3.553
71. Ryder E, Russell S (2003). Transposableelements as tools for genomics and genetics in Drosophila. Brief Funct GenomicProteomic, 2(1): 57–71. doi:10.1093/bfgp/2.1.57
72. Scanlon M J, Myers A M (1998). Phenotypicanalysis and molecular cloning of discolored-1 (dsc1), a maize gene requiredfor early kernel development. Plant MolBiol, 37(3): 483–493. doi:10.1023/A:1005998830723
73. Schnable P S, Peterson P A (1989). Geneticevidence of a relationship between two maize transposable elementsystems: Cy and Mutator. Mol GenGenet, 215(2): 317–321. doi:10.1007/BF00339735
74. Schnable P S, Wise R P (1994). Recoveryof heritable, transposon-induced, mutant alleles of the rf2 nuclear restorer of T-cytoplasm maize. Genetics, 136(3): 1171–1185
75. Shen B, Li C, Min Z, Meeley R B, Tarczynski M C, Olsen O A (2003). sal1 determines the number of aleurone cell layers in maize endospermand encodes a class E vacuolar sorting protein. Proc Natl Acad Sci USA, 100(11): 6552–6557. doi:10.1073/pnas.0732023100
76. Singer T, Yordan C, Martienssen R A (2001). Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes Dev, 15(5): 591–602. doi:10.1101/gad.193701
77. Smith L G, Gerttula S M, Han S, Levy J (2001). TANGLED1: a microtubule binding protein required for the spatialcontrol of cytokinesis in maize. J CellBiol, 152(1): 231–236. doi:10.1083/jcb.152.1.231
78. Stinard P S, Robertson D S, Schnable P S (1993). Genetic isolation, cloning, and analysisof a Mutator-induced, dominantantimorph of the maize amylose extender1 locus. Plant Cell, 5(11): 1555–1566. doi:10.1105/tpc.5.11.1555
79. Suzuki M, Mark Settles. A, Tseung C W, Li Q B, Latshaw S, Wu S, Porch T G, Schmelz E A, James M G, McCarty D R (2006). The maize viviparous15 locus encodes the molybdopterinsynthase small subunit. Plant J, 45(2): 264–274. doi:10.1111/j.1365-313X.2005.02620.x
80. Taguchi-Shiobara F, Yuan Z, Hake S, Jackson D (2001). The fasciated ear2 gene encodes a leucine-rich repeat receptor-like protein that regulatesshoot meristem proliferation in maize. Genes Dev, 15(20): 2755–2766. doi:10.1101/gad.208501
81. Talbert L E, Chandler V L (1988). Characterizationof a highly conserved sequence related to Mutator transposable elements in maize. Mol Biol Evol, 5(5): 519–529
82. Tan B C, Schwartz S H, Zeevaart J A D, McCarty D R (1997). Genetic control of abscisic acid biosynthesis in maize. Proc Natl Acad Sci USA, 94(22): 12235–12240. doi:10.1073/pnas.94.22.12235
83. Timmermans M C P, Hudson A, Becraft P W, Nelson T (1999). ROUGH SHEATH2: A Myb protein that represses knox homeobox genes in maize lateral organ primordia. Science, 284(5411): 151–153. doi:10.1126/science.284.5411.151
84. van Leeuwen H, Monfort A, Puigdomenech P (2007). Mutator-like elements identified in melon, Arabidopsis and rice contain ULP1 protease domains. Mol Genet Genomics, 277(4): 357–364. doi:10.1007/s00438-006-0194-9
85. Veit B, Briggs S P, Schmidt R J, Yanofsky M F, Hake S (1998). Regulationof leaf initiation by the terminal ear1 gene of maize. Nature, 393(6681): 166–168. doi:10.1038/30239
86. Walsh J, Waters C A, Freeling M (1997). The maize gene liguleless2 encodes a basic leucine zipper protein involvedin the establishment of the leaf blade-sheath boundary. Genes Dev, 11(2): 208–218
87. Winkler R G, Helentjaris T (1995). The maize Dwarf3 gene encodes a cytochrome P450-mediatedearly step in gibberellin biosynthesis. Plant Cell, 7(8): 1307–1317. doi:10.1105/tpc.7.8.1307
88. Woodhouse M R, Freeling M, Lisch D R (2006a). Initiation, establishment, and maintenanceof heritable MuDR transposon silencingin maize are mediated by distinct factors. PLoS Biol, 4(10): e339. doi: 10.1371/journal.pbio.0040339
89. Woodhouse M R, Freeling M, Lisch D R (2006b). The mop1 (mediator of paramutation1) mutantprogressively reactivates one of the two genes encoded by the MuDR transposon in maize. Genetics, 172(1): 579–592. doi:10.1534/genetics.105.051383
90. Xu X, Dietrich C R, Delledonne M, Xia Y, Wen T J, Robertson D S, Nikolau B J, Schnable P S (1997). Sequence analysis of the cloned glossy8 gene of maize suggests that it maycode for a β-ketoacyl reductase required for the biosynthesisof cuticular waxes. Plant Physiol, 115(2): 501–510. doi:10.1104/pp.115.2.501
91. Yu Z H, Wright S I, Bureau T E (2000). Mutator-like elements in Arabidopsis thaliana: structure, diversity and evolution. Genetics, 156(4): 2019–2031