CRISPR-Cas System for RNA Detection and Imaging

Siyu Chen , Rujia Wang , Chunyang Lei , Zhou Nie

Chemical Research in Chinese Universities ›› 2020, Vol. 36 ›› Issue (2) : 157 -163.

PDF
Chemical Research in Chinese Universities ›› 2020, Vol. 36 ›› Issue (2) : 157 -163. DOI: 10.1007/s40242-019-0030-5
Review

CRISPR-Cas System for RNA Detection and Imaging

Author information +
History +
PDF

Abstract

The system of clustered regularly interspaced short palindromic repeats(CRISPR) and CRISPR-associated endonucleases(Cas) have been widely used in gene editing, disease treatment, molecular diagnosis and chromosome imaging. On account of the programmable target recognition of CRISPR-Cas system and the specific targeting function toward RNA of type VI class II Cas proteins, CRISPR-Cas system has been deployed as RNA recognition and detection tools, exhibiting promising application potentials in the field of RNA detection and imaging. In this review, we summarize the latest research progresses as well as development prospects of CRISPR-Cas system in RNA diagnosis and live cell RNA imaging.

Keywords

Clustered regularly interspaced short palindromic repeats-associated endonucleases(CRISPR-Cas) / RNA detection / RNA imaging / Collateral cleavage

Cite this article

Download citation ▾
Siyu Chen, Rujia Wang, Chunyang Lei, Zhou Nie. CRISPR-Cas System for RNA Detection and Imaging. Chemical Research in Chinese Universities, 2020, 36(2): 157-163 DOI:10.1007/s40242-019-0030-5

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Horvath P, Barrangou R. Science, 2010, 327(5962): 167.

[2]

Makarova K S, Haft D H, Barrangou R, Brouns S J J, Charpentier E, Horvath P, Moineau S, Mojica F J M, Wolf Y I, Yakunin A F, van der Oost J, Koonin E V. Nature Reviews Microbiology, 2011, 9(6): 467.

[3]

Zetsche B, Gootenberg Jonathan S, Abudayyeh Omar O, Slaymaker Ian M, Makarova Kira S, Essletzbichler P, Volz Sara E, Joung J, van der Oost J, Regev A, Koonin Eugene V, Zhang F. Cell, 2015, 163(3): 759.

[4]

Makarova K S, Wolf Y I, Alkhnbashi O S, Costa F, Shah S A, Saunders S J, Barrangou R, Brouns S J J, Charpentier E, Haft D H, Horvath P, Moineau S, Mojica F J M, Terns R M, Terns M P, White M F, Yakunin A F, Garrett R A, van der Oost J, Backofen R, Koonin E V. Nature Reviews Microbiology, 2015, 13: 722.

[5]

Nuñez J K, Kranzusch P J, Noeske J, Wright A V, Davies C W, Doudna J A. Nature Structural & Molecular Biology, 2014, 21: 528.

[6]

Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna J A, Charpentier E. Science, 2012, 337(6096): 816.

[7]

Cong L, Ran F A, Cox D, Lin S, Barretto R, Habib N, Hsu P D, Wu X, Jiang W, Marraffini L A, Zhang F. Science, 2013, 339(6121): 819.

[8]

Wu W, Yang Y, Lei H. Medicinal Research Reviews, 2019, 39(2): 665.

[9]

Knott G J, Doudna J A. Science, 2018, 361(6405): 866.

[10]

Shmakov S, Abudayyeh Omar O, Makarova Kira S, Wolf Yuri I, Gootenberg Jonathan S, Semenova E, Minakhin L, Joung J, Konermann S, Severinov K, Zhang F, Koonin Eugene V. Molecular Cell, 2015, 60(3): 385.

[11]

Mintz R L, Gao M A, Lo K, Lao Y H, Li M, Leong K W. Advanced Biosystems, 2018, 2(11): 1800132.

[12]

Shi K, Lei C Y, Nie Z. Journal of Instrumental Analysis, 2018, 37(10): 1217.

[13]

Chen J S, Ma E, Harrington L B, Da Costa M, Tian X, Palefsky J M, Doudna J A. Science, 2018, 360(6387): 436.

[14]

Abudayyeh O O, Gootenberg J S, Konermann S, Joung J, Slaymaker I M, Cox D B T, Shmakov S, Makarova K S, Semenova E, Minakhin L, Severinov K, Regev A, Lander E S, Koonin E V, Zhang F. Science, 2016, 353(6299): aaf5573.

[15]

Gilbert Luke A, Larson Matthew H, Morsut L, Liu Z, Brar Gloria A, Torres Sandra E, Stern-Ginossar N, Brandman O, Whitehead Evan H, Doudna Jennifer A, Lim Wendell A, Weissman Jonathan S, Qi Lei S. Cell, 2013, 154(2): 442.

[16]

Yamano T, Nishimasu H, Zetsche B, Hirano H, Slaymaker Ian M, Li Y, Fedorova I, Nakane T, Makarova Kira S, Koonin Eugene V, Ishitani R, Zhang F, Nureki O. Cell, 2016, 165(4): 949.

[17]

East-Seletsky A, O’Connell M R, Knight S C, Burstein D, Cate J H D, Tjian R, Doudna J A. Nature, 2016, 538: 270.

[18]

Cooper T A, Wan L, Dreyfuss G. Cell, 2009, 136(4): 777.

[19]

Dong H, Lei J, Ding L, Wen Y, Ju H, Zhang X. Chemical Reviews, 2013, 113(8): 6207.

[20]

Ray S, Widom J R, Walter N G. Chemical Reviews, 2018, 118(8): 4120.

[21]

Wang S, Wei S, Wang S, Zhu X, Lei C, Huang Y, Nie Z, Yao S. Analytical Chemistry, 2019, 91(2): 1651.

[22]

Wang S, Song W, Wei S, Zeng S, Yang S, Lei C, Huang Y, Nie Z, Yao S. Analytical Chemistry, 2019, 91(13): 8622.

[23]

Liu L, Li X, Ma J, Li Z, You L, Wang J, Wang M, Zhang X, Wang Y. Cell, 2017, 170(4): 714.

[24]

Knott G J, East-Seletsky A, Cofsky J C, Holton J M, Charles E, O’Connell M R, Doudna J A. Nature Structural & Molecular Biology, 2017, 24: 825.

[25]

O’Connell M R. Journal of Molecular Biology, 2019, 431(1): 66.

[26]

Qin P, Park M, Alfson K J, Tamhankar M, Carrion R, Patterson J L, Griffiths A, He Q, Yildiz A, Mathies R, Du K. ACS Sensors, 2019, 4(4): 1048.

[27]

Chen Y, Yang S, Peng S, Li W, Wu F, Yao Q, Wang F, Weng X, Zhou X. Chemical Science, 2019, 10: 2975.

[28]

Saliminejad K, Khorram Khorshid H R, Soleymani Fard S, Ghaf-fari S H. Journal of Cellular Physiology, 2019, 234(5): 5451.

[29]

Shan Y, Zhou X, Huang R, Xing D. Analytical Chemistry, 2019, 91(8): 5278.

[30]

Yuan C. Q., Tian T., Sun J., Hu M. L., Wang X. S., Xiong E. H., Cheng M., Bao Y. J., Lin W., Jiang J. M., Yang C. W., Chen Q., Wang H., Wang X. R., Deng X. B., Liao X. P., Liu Y. H., Zhang G. H., Zhou X. M., bioRxiv, 2019, 615724

[31]

Piepenburg O, Williams C H, Stemple D L, Armes N A. PLoS Biology, 2006, 4(7): e204.

[32]

Zhao Y, Chen F, Li Q, Wang L, Fan C. Chemical Reviews, 2015, 115(22): 12491.

[33]

Gootenberg J S, Abudayyeh O O, Lee J W, Essletzbichler P, Dy A J, Joung J, Verdine V, Donghia N, Daringer N M, Freije C A, Myhrvold C, Bhattacharyya R P, Livny J, Regev A, Koonin E V, Hung D T, Sabeti P C, Collins J J, Zhang F. Science, 2017, 356(6336): 438.

[34]

Myhrvold C, Freije C A, Gootenberg J S, Abudayyeh O O, Metsky H C, Durbin A F, Kellner M J, Tan A L, Paul L M, Parham L A, Garcia K F, Barnes K G, Chak B, Mondini A, Nogueira M L, Isern S, Michael S F, Lorenzana I, Yozwiak N L, MacInnis B L, Bosch I, Gehrke L, Zhang F, Sabeti P C. Science, 2018, 360(6387): 444.

[35]

Gootenberg J S, Abudayyeh O O, Kellner M J, Joung J, Collins J J, Zhang F. Science, 2018, 360(6387): 439.

[36]

Qiu X Y, Zhu L Y, Zhu C S, Ma J X, Hou T, Wu X M, Xie S S, Min L, Tan D A, Zhang D Y, Zhu L. ACS Synthetic Biology, 2018, 7(3): 807.

[37]

Hirosawa M, Fujita Y, Saito H. ACS Synthetic Biology, 2019, 8(7): 1575.

[38]

Li Y, Teng X, Zhang K, Deng R, Li J. Analytical Chemistry, 2019, 91(6): 3989.

[39]

Holt C E, Bullock S L. Science, 2009, 326(5957): 1212.

[40]

Martin K C, Ephrussi A. Cell, 2009, 136(4): 719.

[41]

Lunde B M, Moore C, Varani G. Nature Reviews Molecular Cell Biology, 2007, 8(6): 479.

[42]

Santangelo P J. Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology, 2010, 2(1): 11.

[43]

Filipovska A, Razif M F M, Nygård K K A, Rackham O. Nature Chemical Biology, 2011, 7: 425.

[44]

Fouts D E, True H L, Celander D W. Nucleic Acids Research, 1997, 25(22): 4464.

[45]

O’Connell M R, Oakes B L, Sternberg S H, East-Seletsky A, Kaplan M, Doudna J A. Nature, 2014, 516: 263.

[46]

Batra R, Nelles D A, Pirie E, Blue S M, Marina R J, Wang H, Chaim I A, Thomas J D, Zhang N, Nguyen V, Aigner S, Markmiller S, Xia G, Corbett K D, Swanson M S, Yeo G W. Cell, 2017, 170(5): 899.

[47]

Nelles David A, Fang Mark Y, O’Connell Mitchell R, Xu Jia L, Markmiller Sebastian J, Doudna Jennifer A, Yeo Gene W. Cell, 2016, 165(2): 488.

[48]

Abudayyeh O O, Gootenberg J S, Essletzbichler P, Han S, Joung J, Belanto J J, Verdine V, Cox D B T, Kellner M J, Regev A, Lander E S, Voytas D F, Ting A Y, Zhang F. Nature, 2017, 550: 280.

[49]

Wang H, Nakamura M, Abbott T R, Zhao D, Luo K, Yu C, Nguyen C M, Lo A, Daley T P, La Russa M, Liu Y, Qi L S. Science, 2019, 365(6459): 1301.

[50]

Hanewich-Hollatz M H, Chen Z, Hochrein L M, Huang J, Pierce N A. ACS Central Science, 2019, 5(7): 1241.

[51]

Liu J, Zhang Y, Xie H, Zhao L, Zheng L, Ye H. Small, 2019, 15(42): 1902989.

AI Summary AI Mindmap
PDF

237

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/