INTRODUCTION
THE MET1-UB SYSTEM
Unique features of E3 ligase complex LUBAC
1 Met1-Ub system. A Schematic diagram of the LUBAC subunits, HOIP, HOIL-1L and SHARPIN. Arrows indicate interactions. B The model that LUBAC conjugates Met1-Ub to the substrate. E1 activates ubiquitin and leads to the formation of a thioester bond between the C terminus of ubiquitin and the catalytic cysteine of E1 (E1~Ub). Then the activated ubiquitin is transferred to the catalytic cysteine of E2 to form the E2~Ub thioester intermediate. Concomitantly, LUBAC binds E2~Ub and substrate to facilitate the transfer of ubiquitin molecules to the substrate. Arrows indicate the transfer of ubiquitin molecular. C Schematic diagram of LUBAC-associated DUBs, OTULIN and CYLD-SPATA2. Arrows indicate interactions. PUB, peptide:N-glycanase/ubiquitin-associated UBA-containing or UBX-containing protein; ZF, zinc finger; NZF, Npl4-like zinc finger; UBA, ubiquitin-associated; RING, really interesting new gene; IBR, in-between-RING; LDD, linear ubiquitin chain-determining domain; PH, pleckstrin homology; LTM, LUBAC-tethering motif; UBL, ubiquitin-like; PIM, PUB-interacting motif; OTU, ovarian tumour; CAP-Gly, cytoskeleton-associated protein glycine-rich; USP, Ubiquitin specific protease; B-box, B-box type zinc finger |
The assembly of Met1-Ub
The disassembly of Met1-Ub
CELLULAR FUNCTIONS OF MET1-UB
1 The substrates of LUBAC |
Substrate | Function of Met1-Ub | Reference |
NEMO | Facilitating IKK activation | Tokunaga et al. (2009) |
LUBAC | Destabilizing LUBAC components and impairing its ability | Keusekotten et al. (2013), Heger et al. (2018) |
TRIM25 | InducingTRIM25 degradation and inhibiting TRIM25 interaction with RIG-I. | Inn et al. (2011) |
RIPK1 | Promoting the recruitment of A20 to the TNF-RSC | Gerlach et al. (2011), Draber et al. (2015) |
RIPK2 | Promoting the recruitment of NEMO to facilitate IKK activation | Fiil et al. (2013) |
TNFR | Promoting the recruitment of A20 to the TNF-RSC | Draber et al. (2015) |
TRADD | Promoting the recruitment of A20 to the TNF-RSC | Draber et al. (2015) |
IRAK1 | Activating the canonical IKK complex | Emmerich et al. (2013) |
IRAK4 | Activating the canonical IKK complex | Emmerich et al. (2013) |
MyD88 | Activating the canonical IKK complex | Emmerich et al. (2013) |
ASC | Regulating NLRP3 inflammasome activation | Rodgers et al. (2014) |
FADD | Unknown (may affect cell survival and death.) | Goto and Tokunaga (2017) |
Caspase-8 | Unknown (may directly or indirectly inhibit caspase-8 activity) | Lafont et al. (2017) |
ATG13 | Stabilizing ATG13 protein and activating autophagy. | Chu et al. (2021) |
cFLIP | Stabilizing cFLIP and protecting cells from TNFα-induced apoptosis | Tang et al. (2018) |
PKC | Promoting degradation of activated PKC | Nakamura et al. (2006) |
BCL10 | Required for the association of BCL10 with NEMO and NF-κB activation | Yang et al. (2016) |
STAT1 | Inhibiting STAT1 binding to IFNAR2 and restricting STAT1 activation | Zuo et al. (2020) |
STAT3 | Inhibiting STAT3 activity by recruitment of the phosphatase TC-PTP to STAT3 | Du et al. (2023) |
Htt-polyQ | Promoting Htt-polyQ degradation and decreasing proteotoxicity | van Well et al. (2019) |
Ago2 | Restraining miRNA-mediated gene silencing | Zhang et al. (2021) |
ALK1 | Inhibiting ALK1 enzyme activity and Smad1/5 activation | Fu et al. (2021) |
PTEN | Inhibiting PTEN phosphatase activity and promoting prostate cancer progression | Guo et al. (2022) |
LKB1 | Promoting LKB1 activity and AMPK activation | Chen et al. (2023) |
GPX4 | Stabilizing GPX4 | Dong et al. (2022) |
CENP-E | Facilitating the anchoring of CENP-E by KNL1 at attached kinetochores to promote chromosome congression and alignment | Wu et al. (2019) |
HIF1α | Stabilizing HIF1α protein and promoting angiogenesis and lung tumorigenesis | Jin et al. (2024) |
2 Functions of Met1-Ub in cell signaling. Various upstream stimuli lead to multiple regulation events that activate LUBAC. Then, LUBAC conjugates Met1-Ub on downstream substrates that are involved in the regulation of diverse cellular functions. The cell signaling regulated by Met1-Ub and a partial list of known substrates is shown at the bottom |
NF-κB signaling
3 Met1-Ub plays a central role in TNF-induced NF-кB signaling and cell death. TNF stimulation triggers the recruitment of LUBAC to complex-I where it mediates the Met1-Ub of NEMO and other components of TNF-RSC. Met1-Ub of NEMO activates IKK and subsequent NF-кB signaling. Met1-Ub of the components of TNF-RSC prevents the formation of complex-II, thereby suppressing TNF-induced cell death, apoptosis and necroptosis. DUBs such as OTULIN and CYLD antagonize the actions of LUBAC by restricting the accumulation of Met1-Ub. LUBAC recruitment also ensures the full activation of the MAPK pathway. Different ubiquitin linkage types are indicated in the figure |