p-Coumaric acid (p-CA) is a valuable phenolic compound widely applied in food, pharmaceutical, and cosmetic industries. While the chemolithoautotrophic Cupriavidus necator H16 is a potent host for converting CO2 into biochemicals, its potential for synthesizing aromatic-derived compounds remains to be fully explored. In this study, p-CA was selected as a model compound to systematically engineer the metabolic network of C. necator H16 for aromatic biosynthesis from fructose and CO2. We first established a tyrosine-derived pathway and subsequently enhanced the metabolic flux by identifying and overexpressing key pathway genes—aroG1, aroQ1, and aroC. Then, the carbon flux was redirected towards tyrosine by replacing the native prephenate dehydratase (PheA) with Escherichia coli prephenate dehydrogenase (TyrA). Furthermore, we introduced the E. coli nicotinamide nucleotide transhydrogenase to increase cofactor availability and optimized the process by substituting ammonium chloride with urea. These systematic modifications resulted in an engineered strain producing 25.4 mg/L of p-CA from fructose, a 1,593.3% increase compared to the initial strain. Significantly, under autotrophic conditions, the strain enabled de novo synthesis of p-CA from CO2, reaching 3.1 mg/L. This work not only demonstrates the first light-independent p-CA biosynthesis from CO2 but also validates the feasibility of using C. necator H16 as a sustainable platform for the production of aromatic chemicals.
| [1] |
Abanades JC, Rubin ES, Mazzotti M, Herzog HJ. On the climate change mitigation potential of CO2 conversion to fuels. Energy Environ Sci, 2017, 10(12): 2491-2499.
|
| [2] |
Calderon CG, Gentina JC, Evrard O, Guzman L. Bioconversion of L-Tyrosine into p-coumaric acid by tyrosine ammonia-lyase heterologue of Rhodobacter sphaeroides produced in Pseudomonas putida KT2440. Curr Issues Mol Biol, 2024, 46(9): 10112-10129.
|
| [3] |
Chen RB, Gao JQ, Yu W, Chen XH, Zhai XX, Chen Y, et al.. Engineering cofactor supply and recycling to drive phenolic acid biosynthesis in yeast. Nat Chem Biol, 2022, 18(5): 520.
|
| [4] |
Cruz P, Lebrero R, Vergara-Fernández A, Muñoz R. Airlift Taylor flow bioreactors as a novel platform to enhance H2-assisted CO2 bioconversion processes. Chem Eng J, 2025, 522: 167871.
|
| [5] |
Gao EB, Kyere-Yeboah K, Wu JH, Qiu HY. Photoautotrophic production of p-coumaric acid using genetically engineered Synechocystis sp. Pasteur culture collection 6803. Algal Res, 2021.
|
| [6] |
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA, Smith HO. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods, 2009, 6(5): 343-345.
|
| [7] |
Gruenberg M, Irla M, Myllek S, Draths K. Characterization of two 3-deoxy-d-Arabino-Heptulosonate 7-phosphate synthases from Bacillusmethanolicus. Protein Expr Purif, 2021, 188: 105972.
|
| [8] |
Hirasawa T, Satoh Y, Koma D. Production of aromatic amino acids and their derivatives by Escherichia coli and Corynebacterium glutamicum. World J Microbiol Biotechnol, 2025, 41(2): 65.
|
| [9] |
Hughes TP, Kerry JT, Alvarez-Noriega M, Alvarez-Romero JG, Anderson KD, Baird AH, et al.. Global warming and recurrent mass bleaching of corals. Nature, 2017, 543(7645): 373-377.
|
| [10] |
Jahn M, Crang N, Janasch M, Hober A, Forsstrom B, Kimler K, et al.. Protein allocation and utilization in the versatile chemolithoautotroph Cupriavidus necator. Elife, 2021, 10: e69019.
|
| [11] |
Jang Y, Lee YJ, Gong G, Lee SM, Um Y, Kim KH, et al.. Carbon dioxide valorization into resveratrol via lithoautotrophic fermentation using engineered Cupriavidus necator H16. Microb Cell Factories, 2024, 23(1): 122.
|
| [12] |
Jeong C, Han SH, Lim CG, Kim SC, Jeong KJ. Metabolic engineering of Escherichia coli for enhanced production of p-coumaric acid via L-phenylalanine biosynthesis pathway. Bioprocess Biosyst Eng, 2025, 48(4): 565-576.
|
| [13] |
Ji A, Zou D, Ma A, Wei X. Rational design of DAHP synthase and prephenate dehydrogenase for metabolic engineering of Bacillus amyloliquefaciens to produce L-tyrosine. Int J Biol Macromol, 2025, 307(Pt 2): 142076.
|
| [14] |
Joshi SHN, Yong CT, Gyorgy A. Inducible plasmid copy number control for synthetic biology in commonly used E. coli strains. Nat Commun, 2022.
|
| [15] |
Kukil K, Englund E, Crang N, Hudson EP, Lindberg P. Laboratory evolution of Synechocystis sp. PCC 6803 for phenylpropanoid production. Metab Eng, 2023, 79: 27-37.
|
| [16] |
Lambauer V, Hagenbuchner C, Graber M, Wiltsche H, Subotic V, Hochenauer C, et al.. Cost-efficient autotrophic high-cell-density cultivation of Cupriavidus necator enabled by model-based gas supply. Biotechnol Bioeng, 2026, 123(1): 92-103.
|
| [17] |
Larroude M, Nicaud JM, Rossignol T. Yarrowia lipolytica chassis strains engineered to produce aromatic amino acids via the shikimate pathway. Microb Biotechnol, 2021, 14(6): 2420-2434.
|
| [18] |
Lee J, Yu HE, Lee SY. Metabolic engineering of microorganisms for carbon dioxide utilization. Curr Opin Biotechnol, 2025, 91: 103244.
|
| [19] |
Li B, Jin P, Zhang Y. Powering up protein: how hydrogel-coated electrodes enhance biohybrid production. Water Res, 2025, 278: 123341.
|
| [20] |
Liu Q, Yu T, Li X, Chen Y, Campbell K, Nielsen J. Rewiring carbon metabolism in yeast for high level production of aromatic chemicals. Nat Commun, 2019, 10(1): 4976.
|
| [21] |
Liu MS, Wang C, Ren XF, Gao S, Yu SQ, Zhou JW. Remodelling metabolism for high-level resveratrol production in Yarrowia lipolytica. Biores Technol, 2022.
|
| [22] |
Liu H, Chen Y, Zhang Y, Zhao W, Guo H, Wang S, et al.. Enhanced production of polyhydroxyalkanoates in Pseudomonas putida KT2440 by a combination of genome streamlining and promoter engineering. Int J Biol Macromol, 2022, 209(Pt A): 117-124.
|
| [23] |
Liu Z, Deng Z, Davis SJ, Ciais P. Global carbon emissions in 2023. Nat Rev Earth Environ, 2024, 5(4): 253-254.
|
| [24] |
Mutz M, Kösters D, Wynands B, Wierckx N, Marienhagen J. Microbial synthesis of the plant natural product precursor p-coumaric acid with Corynebacterium glutamicum. Microb Cell Fact, 2023.
|
| [25] |
Nakamura K, Nagaki K, Matsutani M, Adachi O, Kataoka N, Ano Y, et al.. Relocation of dehydroquinate dehydratase to the periplasmic space improves dehydroshikimate production with Gluconobacter oxydans strain NBRC3244. Appl Microbiol Biotechnol, 2021, 105(14–15): 5883-5894.
|
| [26] |
Nishikura-Imamura S, Matsutani M, Insomphun C, Vangnai AS, Toyama H, Yakushi T, et al.. Overexpression of a type II 3-dehydroquinate dehydratase enhances the biotransformation of quinate to 3-dehydroshikimate in Gluconobacter oxydans. Appl Microbiol Biotechnol, 2014, 98(7): 2955-2963.
|
| [27] |
Novoveska L, Nielsen SL, Eroldogan OT, Haznedaroglu BZ, Rinkevich B, Fazi S, et al.. Overview and challenges of large-scale cultivation of photosynthetic microalgae and cyanobacteria. Mar Drugs, 2023.
|
| [28] |
Pan H, Wang J, Wu H, Li Z, Lian J. Synthetic biology toolkit for engineering Cupriviadus necator H16 as a platform for CO2 valorization. Biotechnol Biofuels, 2021, 14(1): 212.
|
| [29] |
Pavan M, Reinmets K, Garg S, Mueller AP, Marcellin E, Kopke M, et al.. Advances in systems metabolic engineering of autotrophic carbon oxide-fixing biocatalysts towards a circular economy. Metab Eng, 2022, 71: 117-141.
|
| [30] |
Peng X, Kelly RM, Han Y. Sequential processing with fermentative Caldicellulosiruptor kronotskyensis and chemolithoautotrophic Cupriavidus necator for converting rice straw and CO2 to polyhydroxybutyrate. Biotechnol Bioeng, 2018, 115(6): 1624-1629.
|
| [31] |
Peyrot C, Peru AAM, Mouterde LMM, Allais F. Proline-mediated Knoevenagel-Doebner condensation in ethanol: a sustainable access to p-hydroxycinnamic acids. ACS Sustain Chem Eng, 2019, 7(10): 9422-9427.
|
| [32] |
Ping JR, Wang L, Qin ZJ, Zhou ZM, Zhou JW. Synergetic engineering of Escherichia coli for efficient production of L-tyrosine. Synth Syst Biotechnol, 2023, 8(4): 724-731.
|
| [33] |
Plaggenborg R, Overhage J, Steinbuchel A, Priefert H. Functional analyses of genes involved in the metabolism of ferulic acid in Pseudomonas putida KT2440. Appl Microbiol Biotechnol, 2003, 61(5–6): 528-535.
|
| [34] |
Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, et al.. Genome sequence of the bioplastic-producing "Knallgas" bacterium Ralstonia eutropha H16. Nat Biotechnol, 2006, 24(10): 1257-1262.
|
| [35] |
Pu X, Weng C, Li Y, Geng B, Yang H, Peng X, et al.. Engineering mixotrophy in the chemolithoautotrophic Cupriavidus necator through hydrogenase induction. ACS Synth Biol, 2026, 15(2): 773-788.
|
| [36] |
Rehm N, Georgi T, Hiery E, Degner U, Schmiedl A, Burkovski A, et al.. L-Glutamine as a nitrogen source for Corynebacterium glutamicum: derepression of the AmtR regulon and implications for nitrogen sensing. Microbiology (Reading), 2010, 156(Pt 10): 3180-3193.
|
| [37] |
Reifenrath M, Boles E. Engineering of hydroxymandelate synthases and the aromatic amino acid pathway enables de novo biosynthesis of mandelic and 4-hydroxymandelic acid with Saccharomyces cerevisiae. Metab Eng, 2018, 45: 246-254.
|
| [38] |
Rodriguez A, Kildegaard KR, Li MJ, Borodina I, Nielsen J. Establishment of a yeast platform strain for production of p-coumaric acid through metabolic engineering of aromatic amino acid biosynthesis. Metab Eng, 2015, 31: 181-188.
|
| [39] |
Santos CNS, Koffas M, Stephanopoulos G. Optimization of a heterologous pathway for the production of flavonoids from glucose. Metab Eng, 2011, 13(4): 392-400.
|
| [40] |
Sauer U, Canonaco F, Heri S, Perrenoud A, Fischer E. The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. J Biol Chem, 2004, 279(8): 6613-6619.
|
| [41] |
Shan BY, Mo J, Yang JY, Qin XC, Yu HA. Cloning and functional characterization of a cinnamate 4-hydroxylase gene from the hornwort Anthoceros angustus. Plant Sci, 2024.
|
| [42] |
Shen J, Liu PF, Zhang B, Ye BC, Xu SQ, Su WK, et al.. Expanding the application of tyrosine: engineering microbes for the production of tyrosine and its derivatives. Front Bioeng Biotechnol, 2025.
|
| [43] |
Sova M, Saso L. Natural sources, pharmacokinetics, biological activities and health benefits of hydroxycinnamic acids and their metabolites. Nutrients, 2020.
|
| [44] |
Tang R, Yuan X, Yang J. Problems and corresponding strategies for converting CO2 into value-added products in Cupriavidus necator H16 cell factories. Biotechnol Adv, 2023, 67: 108183.
|
| [45] |
Tang R, Xu R, Gao X, Dai C, Qin X, Yang J. Production of alpha-amylase from gluconate and carbon dioxide by protein synthesis and secretion optimization in Cupriavidus necator H16. Bioresource Technol, 2025, 416: 131744.
|
| [46] |
Wang ZW, Jian XY, Zhao YC, Li S, Sui ZW, Li L, et al.. Functional characterization of cinnamate 4-hydroxylase from Helianthus annuus Linn using a fusion protein method. Gene, 2020.
|
| [47] |
Wang YH, Cui L, Ding LJ, Su XY, Luo HY, Huang HQ, et al.. Unlocking the potential of Cupriavidus necator H16 as a platform for bioproducts production from carbon dioxide. World J Microbiol Biotechnol, 2024, 40(12): 389.
|
| [48] |
Wang Y, Tian Y, Xu D, Cheng S, Li WW, Song H. Recent advances in synthetic biology toolkits and metabolic engineering of Ralstonia eutropha H16 for production of value-added chemicals. Biotechnol Adv, 2025, 79: 108516.
|
| [49] |
Weng C, Pu X, Tang R, Han Y. Biosynthesis of melanin from lignin hydrolysates by metabolically engineered Cupriavidus necator. Sci China Life Sci, 2026, 69(1): 285-292.
|
| [50] |
Wu SJ, Chen WJ, Lu SJ, Zhang HL, Yin LH. Metabolic engineering of Shikimic acid biosynthesis pathway for the production of shikimic acid and its branched products in microorganisms: advances and prospects. Molecules, 2022.
|
| [51] |
Xu X, Gu X, Wang Z, Shatner W, Wang Z. Progress, challenges and solutions of research on photosynthetic carbon sequestration efficiency of microalgae. Renew Sustain Energy Rev, 2019, 110: 65-82.
|
| [52] |
Yang XY, Xu MY, Zou RS, Angelidaki I, Zhang YF. Microbial protein production from CO2, H2, and recycled nitrogen: focusing on ammonia toxicity and nitrogen sources. J Clean Prod, 2021, 291: 125921.
|
| [53] |
Yang HQ, Jia XJ, Han YJ. Microbial redox coenzyme engineering and applications in biosynthesis. Trends Microbiol, 2022, 30(4): 318-321.
|
| [54] |
Yang Q, Wang Y, Zhao X. Microbial cell factories for phenylethanoid glycosides: a review on engineering strategies and perspectives. Fermentation, 2026.
|
| [55] |
Yu J, Munasinghe P. Gas fermentation enhancement for chemolithotrophic growth of Cupriavidus necator on carbon dioxide. Fermentation, 2018.
|
| [56] |
Zhang QS, Wu BF, Han LL, Yu D, Liang T, Wang Y, et al.. Functional characterization of two 3-dehydroquinases of AroQ1 and AroQ2 in the shikimate pathway and expression of genes for the type III secretion system in Ralstonia solanacearum. Front Microbiol, 2023, 14: 1186688.
|
| [57] |
Zhang RZ, Shah AA, Wang BN, Gong CJ. Current progress of p-coumaric acid production using bioengineering technologies. Food Biosci, 2025, 71: 107109.
|
| [58] |
Zhu JR, Yang S, Cao Q, Li XY, Jiao LC, Shi YX, et al.. Engineering Yarrowia lipolytica as a cellulolytic cell factory for production of p-coumaric acid from cellulose and hemicellulose. J Agric Food Chem, 2024, 72(11): 5867-5877.
|
Funding
Natural Science Foundation of Shandong Province(ZR2023QB137)
Science and Technology Support Plan for Youth Innovation of Colleges and Universities of Shandong Province of China(2022KJ167)
RIGHTS & PERMISSIONS
Jiangnan University