Metabolic engineering of Escherichia coli for biosynthesis of inosinic acid

Xiaoxi Li , Wenwen Yu , Baoyuan Guo , Xutao Lang , Xianhao Xu , Yanfeng Liu , Jianghua Li , Guocheng Du , Xueqin Lv , Long Liu

Systems Microbiology and Biomanufacturing ›› : 1 -13.

PDF
Systems Microbiology and Biomanufacturing ›› :1 -13. DOI: 10.1007/s43393-025-00390-z
Original Article
research-article

Metabolic engineering of Escherichia coli for biosynthesis of inosinic acid

Author information +
History +
PDF

Abstract

Microbial fermentation is one of the primary approaches for inosinic acid (IMP) production. However, most IMP-producing strains are non-model organisms, which limits the application of genetic engineering for further strain improvement. Additionally, these strains require expensive substrates as feedstock, increasing production costs. In this study, we engineered Escherichia coli, a well-characterized model microorganism, as the chassis for IMP biosynthesis from glucose by systematically optimizing its metabolic network. First, we reprogrammed the metabolic flux of the pentose phosphate pathway to increase the intracellular availability of phosphoribosyl pyrophosphate (PRPP), a key precursor of IMP, achieving an IMP titer of 484.6 mg/L. Then, the alleviation of feedback inhibition in the purine biosynthetic pathway increased the IMP titer to 562.0 mg/L. Furthermore, by identifying the rate-limiting steps in the purine synthesis pathway and knocking out competing pathways for IMP synthesis, we further increased the IMP titer to 1409.6 mg/L. Finally, by enhancing the supply of cofactor N10-formyl-tetrahydrofolate, the titer of IMP reached 2.1 g/L in shake-flasks and 3.1 g/L in 5-L bioreactors. This study provides new insights for the construction of cell factories for the synthesis of nucleotide derivatives.

Keywords

Inosinic acid / Escherichia coli / Metabolic engineering / N10-formyl-tetrahydrofolate

Cite this article

Download citation ▾
Xiaoxi Li, Wenwen Yu, Baoyuan Guo, Xutao Lang, Xianhao Xu, Yanfeng Liu, Jianghua Li, Guocheng Du, Xueqin Lv, Long Liu. Metabolic engineering of Escherichia coli for biosynthesis of inosinic acid. Systems Microbiology and Biomanufacturing 1-13 DOI:10.1007/s43393-025-00390-z

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

KawaiM. Taste enhancements between various amino acids and IMP. Chem Senses, 2002, 27(8): 739-45

[2]

Ledesma-AmaroR, JiménezA, SantosMA, RevueltaJL. Biotechnological production of feed nucleotides by microbial strain improvement. Process Biochem, 2013, 48(9): 1263-70

[3]

TaktakishviliM, NairV. A new method for the phosphorylation of nucleosides. Tetrahedron Lett, 2000, 41(37): 7173-6

[4]

FuruyaA, AbeS, KinoshitaS. Production of nucleic acid-Related substances by fermentative processes: XIX. Accumulation of 5′-Inosinic acid by a mutant of Brevibacterium ammoniagenes. Appl Microbiol, 1968, 16(7): 981-7

[5]

PeiferS, BarduhnT, ZimmetS, VolmerDA, HeinzleE, SchneiderK. Metabolic engineering of the purine biosynthetic pathway in Corynebacterium glutamicum results in increased intracellular pool sizes of IMP and hypoxanthine. Microb Cell Factories, 2012, 111138

[6]

PontrelliS, ChiuT-Y, LanEI, ChenFY-H, ChangP, LiaoJC. Escherichia coli as a host for metabolic engineering. Metab Eng, 2018, 50: 16-46

[7]

LiuM, FuY, GaoW, XianM, ZhaoG. Highly efficient biosynthesis of hypoxanthine in Escherichia coli and Transcriptome-Based analysis of the purine metabolism. ACS Synth Biol, 2020, 9(3): 525-35

[8]

ZhaoZ, YouJ, ShiX, CaiM, ZhuR, YangF, XuM, ShaoM, ZhangR, ZhaoY, RaoZ. Multi-Module engineering to guide the development of an efficient L-Threonine-Producing cell factory. Bioresour Technol, 2025, 416131802

[9]

MengLM, NygaardP. Identification of hypoxanthine and guanine as the Co-Repressors for the purine Regulon genes of Escherichia coli. Mol Microbiol, 1990, 4(12): 2187-92

[10]

WillemoësM, Hove-JensenB, LarsenS. Steady state kinetic model for the binding of substrates and allosteric effectors to Escherichia. J Biol Chem, 2000, 275(45): 35408-12

[11]

MessengerLJ, ZalkinH. Glutamine phosphoribosylpyrophosphate amidotransferase from Escherichia coli. Purification and properties. J Biol Chem, 1979, 254(9): 3382-92

[12]

ZhuX, WuY, LvX, LiuY, DuG, LiJ, LiuL. Combining CRISPR–Cpf1 and recombineering facilitates fast and efficient genome editing in Escherichia coli. ACS Synth Biol, 2022, 11(5): 1897-907

[13]

YuL, ZhuH, WangZ, HuangJ, ZhuY, FanG, WangY, ChenX, ZhouG. Circular RNA circfirre drives osteosarcoma progression and metastasis through Tumorigenic-Angiogenic coupling. Mol Cancer, 2022, 211167

[14]

WuY, LiuY, LvX, LiJ, DuG, LiuL. CAMERS-B: CRISPR/Cpf1 assisted Multiple‐genes editing and regulation system for Bacillus subtilis. Biotechnol Bioeng, 2020, 117(6): 1817-25

[15]

SpiliotisM, Inverse FusionPCR, CloningPLoS ONE, 2012, 74e35407

[16]

Law RC, Nurwono G, Park JO. A parallel glycolysis provides a selective advantage through rapid growth acceleration. Nat Chem Biol. 2024;20(3):314–322.

[17]

ShimaokaM, TakenakaY, KurahashiO, KawasakiH, MatsuiH. Feedback regulation and coordination of the main metabolism for bacterial growth and metabolic engineering for amino acid fermentation. J Biosci Bioeng, 2007, 103(3): 255-61

[18]

ShimaokaM, TakenakaY, KurahashiO, KawasakiH, MatsuiH. Effect of amplification of desensitized PurF and Prs on inosine accumulation in Escherichia coli. J Biosci Bioeng, 2007, 103(3): 255-61

[19]

ZhouG, SmithJL, ZalkinH. Binding of purine nucleotides to two regulatory sites results in synergistic feedback Inhibition of glutamine 5-Phosphoribosylpyrophosphate amidotransferase. J Biol Chem, 1994, 269(9): 6784-9

[20]

TremblayLW, Dunaway-MarianoD, AllenKN. Structure and activity analyses of Escherichia coli K-12 NagD provide insight into the evolution of biochemical function in the Haloalkanoic acid dehalogenase superfamily. Biochemistry, 2006, 45(4): 1183-93

[21]

KuznetsovaE, ProudfootM, GonzalezCF, BrownG, OmelchenkoMV, BorozanI, CarmelL, WolfYI, MoriH, SavchenkoAV, ArrowsmithCH, KooninEV, EdwardsAM, YakuninAF. Genome-Wide analysis of substrate specificities of the Escherichia coli haloacid Dehalogenase-like phosphatase family. J Biol Chem, 2006, 281(47): 36149-61

[22]

HuoA, XiongX. PAICS as a potential target for cancer therapy linking purine biosynthesis to cancer progression. Life Sci, 2023, 331122070

[23]

TorresRJ, PriorC, PuigJG. Efficacy and safety of allopurinol in patients with Hypoxanthine-Guanine phosphoribosyltransferase deficiency. Metabolism, 2007, 56(9): 1179-86

[24]

MiyamotoT, FushinobuS, SaitohY, SekineM, KataneM, Sakai-KatoK, HommaH. Novel Tetrahydrofolate‐dependent d ‐serine dehydratase activity of Serine hydroxymethyltransferases. FEBS J, 2024, 291(2): 308-22

[25]

ShimizuK, MatsuokaY. Feedback regulation and coordination of the main metabolism for bacterial growth and metabolic engineering for amino acid fermentation. Biotechnol Adv, 2022, 55107887

[26]

AndersenJT, PoulsenP, JensenKF. Attenuation in the rph-pyrE Operon of Escherichia coli and processing of the dicistronic mRNA. Eur J Biochem, 1992, 206(2): 381-90

Funding

the National Key Research and Development Program of China(2022YFC3401303)

the Key Technological Project of Jiangxi Province(20244AFH82001)

the Key R&D Program of Shandong Province, China(2024CXGC010917)

RIGHTS & PERMISSIONS

Jiangnan University

PDF

86

Accesses

0

Citation

Detail

Sections
Recommended

/