Metabolic engineering of Escherichia coli to enhance L-tryptophan biosynthesis

Minglei Hou , Shengqi Gao , Jing Wu , Sheng Chen , Kang Zhang

Systems Microbiology and Biomanufacturing ›› 2025, Vol. 5 ›› Issue (2) : 622 -634.

PDF
Systems Microbiology and Biomanufacturing ›› 2025, Vol. 5 ›› Issue (2) : 622 -634. DOI: 10.1007/s43393-025-00338-3
Original Article

Metabolic engineering of Escherichia coli to enhance L-tryptophan biosynthesis

Author information +
History +
PDF

Abstract

L-tryptophan is an essential aromatic amino acid, which is also a precursor for the synthesis of multiple important bioactive compounds and is widely used in food additives, medicine and animal feed. There are many studies on the synthesis of L-tryptophan by microbial cell factories; however, further development has been limited by problems such as low conversion rates from glucose to L-tryptophan and dependence on antibiotics and inducers during the fermentation process. In this study, to enhance the L-tryptophan synthesis level for increasing demands, combinations of feedback-resistant enzymes AroG, TrpE and SerA were optimized, 13 synthesis-related genes (including ppsA, yddG and etc.) were overexpressed. And then the optimized aroGS211F, trpEQ71K/S94N/C465Y-trpABCD and serAH344A/N364A expression cassette was integrated into the genome with the CRISPR-associated transposases system. The copy numbers of the expression cassette were optimized to balance the cell growth and L-tryptophan synthesis, yielding a producing strain without plasmids. To further optimize carbon flux and facilitate L-tryptophan biosynthesis, the yddG and prsL135I was knocked in, and poxB was knocked out with CRISPR-Cas9 system. Finally, the accumulation of L-tryptophan reached 5.1 g/L in shake flask culture for 48 h, the total L-tryptophan production of the optimal strain reached 43.0 g/L (extracellular production was 30.9 g/L) under conditions of no antibiotics, inducers and other extra addition at 35 h in a 3 L bioreactor, and the total conversion rate reached 0.180 g L-tryptophan/g glucose.

Keywords

L-tryptophan / Escherichia coli / CRISPR-associated transposases system / Metabolic engineering

Cite this article

Download citation ▾
Minglei Hou, Shengqi Gao, Jing Wu, Sheng Chen, Kang Zhang. Metabolic engineering of Escherichia coli to enhance L-tryptophan biosynthesis. Systems Microbiology and Biomanufacturing, 2025, 5(2): 622-634 DOI:10.1007/s43393-025-00338-3

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

MIT, JIAJIAY, TIANJINY, QISHENGS, SHURANJ, MEIJUANX, XUEWEIP, ZHIMINGR. Application of modern synthetic biology technology in aromatic amino acids and derived compounds biosynthesis. Bioresour Technol, 2024, 406: 131050-131050.

[2]

NIUH, LIR, LIANGQ, QIQ, LIQ, GUP. Metabolic engineering for improving L-tryptophan production in Escherichia coli. J Ind Microbiol Biotechnol, 2019, 46: 55-65.

[3]

XUEC, LIG, GUZHENGQ, SHIX, CHUQSUY, YUANQ, BAOX, LUZ, LIL. Tryptophan metabolism in health and disease. Cell Metabol, 2023, 35: 1304-26.

[4]

DINGS, CHENX, GAOC, LIUL. Modular engineering of Escherichia coli for high-level production of L-tryptophan. Chin J Biotechnol, 2023, 39: 2359-74.

[5]

GUOL, DINGS, LIUY, GAOC, SONGHUG, CHENWLIUJ. LIU, L. Enhancing tryptophan production by balancing precursors in Escherichia coli. Biotechnol Bioeng, 2022, 119: 983-93.

[6]

DINGD, BAID, LIJ, MAOZ, ZHUY, LIUP, MALINJ. ZHANG, D. analyzing the genetic characteristics of a tryptophan-overproducing Escherichia coli. Bioprocess Biosyst Eng, 2021, 44: 1685-97.

[7]

DOROSHENKOV, AIRICHL, VITUSHKINAM, KOLOKOLOVAA, LIVSHITSV, MASHKOS. YddG from Escherichia coli promotes export of aromatic amino acids. FEMS Microbiol Lett, 2007, 275: 312-8.

[8]

DUL, ZHANGZ, XUQ, CHENN. Central metabolic pathway modification to improve L-tryptophan production in Escherichia coli. Bioengineered, 2019, 10: 59-70.

[9]

LIUS, XUWANGB-B, ZHANGW-G. Engineering of shikimate pathway and terminal branch for efficient production of L-Tryptophan in Escherichia coli. Int J Mol Sci, 2023, 24: 11866.

[10]

STRECKERJ, LADHAA, GARDNERZ, SCHMID-BURGKJL, KOONINMAKAROVAKS, ZHANGF. RNA-guided DNA insertion with CRISPR-associated transposases. Science, 2019, 365: 48-53.

[11]

KLOMPESE, VOPLH, HALPIN-HEALYTS, STERNBERGSH. Transposon-encoded CRISPR-Cas systems direct RNA-guided DNA integration. Nature, 2019, 571: 219-25.

[12]

ZHANGY, SUNX, WANGQ, XUJ, DONGF, YANGS, YANGJ, ZHANGZ, ILANY, CHENJ, ZHANGJ, LIUY, TAOR, JIANGY, YANGJ, YANGS. Multicopy chromosomal integration using CRISPR-associated transposases. ACS Synth Biol, 2020, 9: 2860-2860.

[13]

ZHOUX, ZHANGZHOUS, YANGS. CRISPR-associated transposases and their applications in bacterial genome editing. Biotechnol Bull, 2023, 39: 49-58.

[14]

LIUL, CHENS, WUJ. Phosphoenolpyruvate:glucose phosphotransferase system modification increases the conversion rate during L-tryptophan production in Escherichia coli. J Ind Microbiol Biotechnol, 2017, 44: 1385-95.

[15]

LIU L, DUAN X, WU J. L-Tryptophan production in Escherichia coli improved by weakening the Pta-AckA pathway. PLoS ONE. 2016;11. https://doi.org/10.1371/journal.pone.0158200

[16]

LIUL, DUANX, WUJ. Modulating the direction of carbon flow in Escherichia coli to improve L-tryptophan production by inactivating the global regulator FruR. J Biotechnol, 2016, 231: 141-8.

[17]

MENGWEIZ, KANGZ, TONGLEL, LUYAOW, MENGPINGW, SHENGQIG, BOHANC, FENGSHANZ, LINGQIAS, JINGW. High-level production of lacto-N-neotetraose in Escherichia coli by stepwise optimization of the biosynthetic pathway. J Agric Food Chem, 2023, 71: 16212-20.

[18]

CHENL, ZENGA-P. Rational design and metabolic analysis of Escherichia coli for effective production of L-tryptophan at high concentration. Appl Microbiol Biotechnol, 2017, 101: 559-68.

[19]

LIX. Metabolic engineering of Escherichia coli for L-serine production. Tianjin Univ Sci Technol, 2021.

[20]

PETERS-WENDISCHP, EGGELINGNETZERR, SAHMH. 3-Phosphoglycerate dehydrogenase from Corynebacterium glutamicum: the C-terminal domain is not essential for activity but is required for inhibition by L-serine. Appl Microbiol Biotechnol, 2002, 60: 437-41.

[21]

HUANG X, DU SUNM, PAN M, ZHANG Y, ZHANG X, XV Y, JU NLIUJ, J., WEI L. Directed evolution of 3-phosphoglycerate dehydrogenase from Corynebacterium glutamicum. Food Ferment Industries. 2024;1–11. https://doi.org/10.13995/j.cnki.11-1802/ts.038795

[22]

CHENY, LIUY, DINGD, CONGL, ZHANGD. Rational design and analysis of an Escherichia coli strain for high-efficiency tryptophan production. J Ind Microbiol Biotechnol, 2018, 45: 357-67.

[23]

ZHANGX, JARBOEJANTAMAKMOOREJC. INGRAM, L. O. Metabolic evolution of energy-conserving pathways for succinate production in Escherichia coli. Appl Biol Sci, 2009, 106: 20180-5.

[24]

CHANDRANSS, YIJ, DRATHSKM, DAENIKENVON, WEBERR, FROSTJW. Phosphoenolpyruvate availability and the biosynthesis of shikimic acid. Biotechnol Prog, 2003, 19: 808-14.

[25]

XIAOM, ZHANGL, LIUS, SHIG. Transformation of phosphotransferase system in Escherichia coli. Chin J Biotechnol, 2014, 30: 1561-72.

[26]

TANGJ, ZHUX, LUJ, LIUP, XUH, TANZ, ZHANGX. Recruiting alternative glucose utilization pathways for improving succinate production. Appl Microbiol Biotechnol, 2013, 97: 2513-20.

[27]

XIONGB. Metabolic optimization of engineered Escherichia coli for L-tryptophan production. Tianjin Univ Sci Technol, 2021.

[28]

LIUQ, ZHANGJ, WEIX-X, OUYANGS-P, WUQ, CHENG-Q. Microbial production of L-glutamate and L-glutamine by recombinant Corynebacterium glutamicum harboring Vitreoscilla hemoglobin gene vgb. Appl Microbiol Biotechnol, 2008, 77: 1297-304.

[29]

ZAKATAEVANP, ROMANENKOVDV, SKRIPNIKOVAVS, VITUSHKINAMV, NOVIKOVAAE. Wild-type and feedback-resistant phosphoribosyl pyrophosphate synthetases from Bacillus amyloliquefaciens: purification, characterization, and application to increase purine nucleoside production. Appl Microbiol Biotechnol, 2012, 93: 2023-33.

[30]

FRIEHSK. Plasmid copy number and plasmid stability. New trends and developments in biochemical engineering. Adv Biochem Eng Biotechnol, 2004, 86: 47-82.

[31]

TYOKEJ, STEPHANOPOULOSG. Stabilized gene duplication enables long-term selection-free heterologous pathway expression. Nat Biotechnol, 2009, 27: 760-5.

[32]

GOORMANSAR, SNOECKN, VERMEULENDECADTH, PETERSK, COUSSEMENTG, VAN HERPEP, DEDBEAUPREZJJ, MAESENEIRESL, SOETAERTWK. Comprehensive study on Escherichia coli genomic expression: does position really matter?. Metab Eng, 2020, 62: 10-9.

[33]

ABDEL-HAMIDAM, ATTWOODMM, GUESTJR. Pyruvate oxidase contributes to the aerobic growth efficiency of Escherichia coli. Microbiology, 2001, 147: 1483-98.

[34]

PINGJ, WANGL, QINZ, ZHOUZ, ZHOUJ. Synergetic engineering of Escherichia coli for efficient production of L-tyrosine. Synth Syst Biotechnol, 2023, 8: 724-31.

Funding

National Natural Science Foundation of China(32272264)

Jiangsu Provincial Key Research and Development Program(BE2023686)

Fundamental Research Funds for the Central Universities(JUSRP122012)

Shenzhen Institute of Synthetic Biology Scientific Research Program(DWKF20210004)

RIGHTS & PERMISSIONS

Jiangnan University

AI Summary AI Mindmap
PDF

329

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/