Cloning, expression, and characterization of thermostable α-amylase of a thermophilic bacterium isolated from hot-spring of Sikkim and sustainable immobilization on coconut coir

Krishnendu Mondal , Prayatna Sharma , Ishfaq Nabi Najar , Shubhadeep Mondal , Santosh Kumar , Sonia Tamang , Suman Kumar Halder , Nagendra Thakur , Keshab Chandra Mondal

Systems Microbiology and Biomanufacturing ›› 2024, Vol. 4 ›› Issue (4) : 1298 -1312.

PDF
Systems Microbiology and Biomanufacturing ›› 2024, Vol. 4 ›› Issue (4) : 1298 -1312. DOI: 10.1007/s43393-024-00271-x
Original Article

Cloning, expression, and characterization of thermostable α-amylase of a thermophilic bacterium isolated from hot-spring of Sikkim and sustainable immobilization on coconut coir

Author information +
History +
PDF

Abstract

• The recombinant α-amylase AmyK2 is highly thermotolerant, stable in a wide range of pH and Ca+ 2 independent enzyme.

• The enzyme having low Km for starch; therefore, it exhibits high affinity for any starchy substrate.

• The enzyme was successfully immobilized at its native state with coconut coir and effective after successive reuse.

Keywords

Thermostable / Bacillus subtilis k2cm / Recombinant α-amylase / Immobilization / Specific activity

Cite this article

Download citation ▾
Krishnendu Mondal, Prayatna Sharma, Ishfaq Nabi Najar, Shubhadeep Mondal, Santosh Kumar, Sonia Tamang, Suman Kumar Halder, Nagendra Thakur, Keshab Chandra Mondal. Cloning, expression, and characterization of thermostable α-amylase of a thermophilic bacterium isolated from hot-spring of Sikkim and sustainable immobilization on coconut coir. Systems Microbiology and Biomanufacturing, 2024, 4(4): 1298-1312 DOI:10.1007/s43393-024-00271-x

登录浏览全文

4963

注册一个新账户 忘记密码

References

[1]

Sharma P, Mondal K, Mondal KC, Thakur N. Hunt for α-amylase from metagenome and strategies to improve its thermostability: a systematic review. World J Microbiol Biotechnol, 2022, 38(11): 203

[2]

Mondal S, Mondal K, Halder SK, Thakur N, Mondal KC. Microbial Amylase: Old but still at the forefront of all major industrial enzymes. Biocatal Agric Biotechnol. 2022;102509.

[3]

Jana M, Maity C, Samanta S, Pati BR, Islam SS, Mohapatra PKD, Mondal KC. Salt-independent thermophilic α-amylase from Bacillus megaterium VUMB109: an efficacy testing for preparation of maltooligosaccharides. Ind Crops Prod, 2013, 41: 386-91

[4]

Mondal S, Soren JP, Mondal J, Rakshit S, Halder SK, Mondal KC. Contemporaneous synthesis of multiple carbohydrate debranching enzymes from newly isolated Aspergillus Fumigatus SKF-2 under solid state fermentation: a unique enzyme mixture for proficient saccharification of plant bioresources. Ind Crops Prod, 2020, 150: 112409

[5]

Sindhu R, Binod P, Madhavan A, Beevi US, Mathew AK, Abraham A, Pandey A, Kumar V. Molecular improvements in microbial α-amylases for enhanced stability and catalytic efficiency. Bioresour Technol, 2017, 245: 1740-8

[6]

Gangadharan D, Jose A, Nampoothiri KM. Recapitulation of stability diversity of microbial α-amylases. Amylase, 2020, 4(1): 11-23

[7]

Das S, Najar I, Sherpa MT, Thakur N. Hot Springs of Sikkim: Biotechnological and sociological importance. Research on Biotechnology in India: some initiatives and accomplishments, 2016, New Delhi, India: New India Publishing Agency 149– 81

[8]

Najar IN, Sherpa MT, Das S, Das S, Thakur N. Microbial ecology of two Hot Springs of Sikkim: predominate population and geochemistry. Sci Total Environ, 2018, 637: 730-45

[9]

Gomes E, AR deS, GL O, R DS, TB deO, A R. Applications and benefits of thermophilic microorganisms and their enzymes for industrial biotechnology. Gene Expression Syst fungi: Advancements Appl, 2016, 459: 92

[10]

Mohamad NR, Marzuki NH, Buang NA, Huyop F, Wahab RA. An overview of technologies for immobilization of enzymes and surface analysis techniques for immobilized enzymes. Biotechnol Biotechnol Equip, 2015, 29(2): 205-20

[11]

Samanta S, Jana M, Maity C, Kar S, Mohapatra PK, Pati BR, Mondal KC. The potential of immobilized bacterial α-amylase on coconut coir, a smart carrier for biocatalysts. Biocatal Biotransform, 2009, 27(2): 131-5

[12]

de Castro HF, de Lima R, Roberto IC. Rice straw as a support for immobilization of microbial lipase. Biotechnol Prog, 2001, 17(6): 1061-4

[13]

Najar IN, Sherpa MT, Das S, Thakur N. Bacterial diversity and functional metagenomics expounding the diversity of xenobiotics, stress, defense and CRISPR gene ontology providing eco-efficiency to Himalayan Hot Springs. Funct Integr Genomics, 2020, 20: 479-96

[14]

Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol, 1987, 4(4): 406-25

[15]

Erickson K. The jukes-cantor model of molecular evolution. Primus, 2010, 20(5): 438-45

[16]

Tagomori BY, Dos Santos FC, Barbosa-Tessmann IP. Recombinant expression, purification, and characterization of an α-amylase from Massilia timonae. 3 Biotech, 2021, 11(1): 13

[17]

Caruso CS, de Fátima Travensolo R, de Campus Bicudo R, de Macedo Lemos EG, de Araújo AP, Carrilho E. α-Hydroxynitrile lyase protein from Xylella fastidiosa: Cloning, expression, and characterization. Microb Pathog, 2009, 47(3): 118-27

[18]

Classics Lowry O, Rosebrough N, Farr A, Randall R. Protein measurement with the Folin phenol reagent. J biol Chem, 1951, 193(1): 265-75

[19]

Mukherjee R, Paul T, Soren JP, Halder SK, Mondal KC, Pati BR, Das Mohapatra PK. Acidophilic α-amylase production from Aspergillus Niger RBP7 using potato peel as substrate: a waste to value added approach. WASTE BIOMASS VALORI, 2019, 10: 851-63

[20]

Hmidet N, Bayoudh A, Berrin JG, Kanoun S, Juge N, Nasri M. Purification and biochemical characterization of a novel α-amylase from Bacillus licheniformis NH1: cloning, nucleotide sequence and expression of amyN gene in Escherichia coli. Process Biochem, 2008, 43(5): 499-510

[21]

Gutarra ML, Godoy MG, Maugeri F, Rodrigues MI, Freire DM, Castilho LR. Production of an acidic and thermostable lipase of the mesophilic fungus Penicillium simplicissimum by solid-state fermentation. Bioresour Technol, 2009, 100(21): 5249-54

[22]

Varavinit S, Chaokasem N, Shobsngob S. Immobilization of a thermostable α-amylase. ScienceAsia, 2002, 28(3): 247-51

[23]

Roy JK, Borah A, Mahanta CL, Mukherjee AK. Cloning and overexpression of raw starch digesting α-amylase gene from Bacillus subtilis strain AS01a in Escherichia coli and application of the purified recombinant α-amylase (AmyBS-I) in raw starch digestion and baking industry. J Mol Catal B Enzym, 2013, 97: 118-29

[24]

Awasthi MK, Wong JW, Kumar S, Awasthi SK, Wang Q, Wang M, Ren X, Zhao J, Chen H, Zhang Z. Biodegradation of food waste using microbial cultures producing thermostable α-amylase and cellulase under different pH and temperature. Bioresour Technol, 2018, 248: 160-70

[25]

Burhanoğlu T, Sürmeli Y, Şanlı-Mohamed G. Identification and characterization of novel thermostable α-amylase from Geobacillus sp. GS33. Int J Biol Macromol, 2020, 164: 578-85

[26]

Zafar A, Aftab MN, Iqbal I, ud Din Z, Saleem MA. Pilot-scale production of a highly thermostable α-amylase enzyme from Thermotoga petrophila cloned into E. Coli and its application as a desizer in textile industry. RSC Adv, 2019, 9(2): 984-92

[27]

Shofiyah SS, Yuliani D, Widya N, Sarian FD, Puspasari F, Radjasa OK, Natalia D. Isolation, expression, and characterization of raw starch degrading α-amylase from a marine lake Bacillus megaterium NL3. Heliyon. 2020;6(12).

[28]

Wang Y, Pan S, Jiang Z, Liu S, Feng Y, Gu Z, Li C, Li Z. A novel maltooligosaccharide-forming amylase from Bacillus stearothermophilus. Food Biosci, 2019, 30: 100415

[29]

Zhang X, Li C, Chen X, Chio C, Shrestha S, Qin W. Bacillus velezensis identification and recombinant expression, purification, and characterization of its α-amylase. Fermentation, 2021, 7(4): 227

[30]

Fincan SA, Özdemir S, Karakaya A, Enez B, Mustafov SD, Ulutaş MS, Şen F. Purification and characterization of thermostable α-amylase produced from Bacillus licheniformis So-B3 and its potential in hydrolyzing raw starch. Life Sci, 2021, 264: 118639

[31]

Keskin Ş, Ertunga NS. Purification, immobilization and characterization of thermostable α-amylase from a thermophilic bacterium Geobacillus sp TF14. Turkish J Biochem, 2017, 42(6): 633-42

[32]

Ozdemir S, Fincan SA, Karakaya A, Enez B. A novel raw starch hydrolyzing thermostable α-amylase produced by newly isolated Bacillus mojavensis SO-10: purification, characterization and usage in starch industries. Braz Arch Biol Technol. 2018;61.

[33]

Abdel-Fattah YR, Soliman NA, El-Toukhy NM, El-Gendi H, Ahmed RS. Production, purification, and characterization of thermostable α-amylase produced by Bacillus licheniformis isolate AI20. J Chem. 2013;2013.

[34]

Xie F, Quan S, Liu D, Ma H, Li F, Zhou F, Chen G. Purification and characterization of a novel α-amylase from a newly isolated Bacillus methylotrophicus strain P11-2. Process Biochem, 2014, 49(1): 47-53

[35]

Soy S, Nigam VK, Sharma SR. Enhanced production and biochemical characterization of a thermostable amylase from thermophilic bacterium Geobacillus icigianus BITSNS038. J Taibah Univ Sci J TAIBAH UNIV SCI, 2021, 15(1): 730-45

[36]

Timilsina PM, Pandey GR, Shrestha A, Ojha M, Karki TB. Purification and characterization of a noble thermostable algal starch liquefying α-amylase from Aeribacillus pallidus BTPS-2 isolated from geothermal spring of Nepal. Biotechnol Rep, 2020, 28: e00551

[37]

Thakur M, Sharma N, Rai AK, Singh SP. A novel cold-active type I pullulanase from a hot-spring metagenome for effective debranching and production of resistant starch. Bioresour Technol, 2021, 320: 124288

[38]

Kohli I, Joshi NC, Varma A. Production, purification and applications of raw starch degrading and calcium-independent α-amylase from soil rich in extremophile. Int J Biol Macromol, 2020, 162: 873-81

[39]

Salem K, Elgharbi F, Ben Hlima H, Perduca M, Sayari A, Hmida-Sayari A. Biochemical characterization and structural insights into the high substrate affinity of a dimeric and Ca2 + independent Bacillus subtilis α‐amylase. Biotechnol Prog, 2020, 36(4): e2964

[40]

Xian L, Wang F, Luo X, Feng YL, Feng JX. Purification and characterization of a highly efficient calcium-independent α-amylase from Talaromyces pinophilus 1–95. PLoS ONE, 2015, 10(3): e0121531

[41]

Paul JS, Lall BM, Jadhav SK, Tiwari KL. Parameter’s optimization and kinetics study of α-amylase enzyme of Bacillus sp MB6 isolated from vegetable waste. Process Biochem, 2017, 52: 123-9

[42]

Sudan SK, Kumar N, Kaur I, Sahni G. Production, purification and characterization of raw starch hydrolyzing thermostable acidic α-amylase from Hot Springs, India. Int J Biol Macromol. 2018;117:831–9.

[43]

Chi MC, Chen YH, Wu TJ, Lo HF, Lin LL. Engineering of a truncated α-amylase of Bacillus sp. strain TS-23 for the simultaneous improvement of thermal and oxidative stabilities. J Biosci Bioeng. 2010;109(6):531–8.

[44]

Lin LL, Huang CC, Lo HF. Impact of Arg210-Ser211 deletion on thermostability of a truncated Bacillus sp strain TS-23 α-amylase. Process Biochem. 2008;43(5):559–65.

[45]

Nwagu TN, Okolo B, Aoyagi H. Immobilization of raw starch saccharifying amylase on glutaraldehyde activated chitin flakes increases the enzyme operation range. Bioresour Technol Rep, 2021, 13: 100645

[46]

Hu Q, Liu J. Production of α-Amylase by Bacillus subtilis QM3 and its enzymatic properties. OALib J. 2021;8(3):1–8.

[47]

Dey G, Nagpal V, Banerjee R. Immobilization of α-amylase from Bacillus circulans GRS 313 on coconut fiber. Appl Biochem Biotechnol, 2002, 102: 303-13

[48]

Nwagu TN, Okolo BN, Aoyagi H. Stabilization of a raw-starch-digesting amylase by multipoint covalent attachment on glutaraldehyde-activated amberlite beads. J Microbiol Biotechnol, 2012, 22(5): 628-36

[49]

Torabizadeh H, Tavakoli M, Safari M. Immobilization of thermostable α-amylase from Bacillus licheniformis by cross-linked enzyme aggregates method using calcium and sodium ions as additives. J Mol Catal B Enzym, 2014, 108: 13-20

[50]

Yassin SN, Jiru TM, Indracanti M. Screening and characterization of thermostable amylase-producing bacteria isolated from soil samples of afdera, Afar region, and molecular detection of amylase-coding gene. Int J Microbiol, 2021, 2021: 1-4

AI Summary AI Mindmap
PDF

452

Accesses

0

Citation

Detail

Sections
Recommended

AI思维导图

/