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Abstract
Sustainable biomineralization technologies rely on the efficient hydrolysis of urea, typically catalyzed by urease-producing microorganisms or purified enzymes. However, conventional approaches such as microbially induced calcium carbonate precipitation (MICP) and enzyme induced calcium carbonate precipitation (EICP) face limitations related to biosafety risks and high costs, respectively. In this study, soybean, an abundant and low-cost agricultural resource, was utilized to extract urease through a soaking and centrifugation process. A geometric modeling approach using tri-axial ellipsoid theory was introduced to explain how soybean grain size affects sieved powder yield. The effects of soybean grain size, powder concentration, temperature, pH, and storage conditions on the urease activity were systematically evaluated. Results showed that smaller soybean particle sizes resulted in lower extraction efficiency, whereas medium-grain soybeans provided the most cost-effective source due to their higher sieved powder yield and lower market price. Urease activity was positively correlated with both powder concentration and temperature within the tested range and reached its maximum at approximately pH 8. Additionally, storage at 4 °C significantly preserved the enzyme's initial activity over 72 h compared to room temperature conditions. These findings establish a practical foundation for the cost-effective production of plant-derived urease, promoting broader application of biomineralization techniques in sustainable geotechnical engineering.
Keywords
Soybean urease
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Soybean grain size
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Temperature
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PH
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Storage period
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Yuyuan Chen, Hemanta Hazarika.
Extraction efficiency and activity determinants of soybean urease for sustainable biomineralization technology.
Smart Construction and Sustainable Cities, 2025, 3(1): DOI:10.1007/s44268-025-00056-8
| [1] |
ParkSS, ChoiSG, NamIH. Effect of plant-induced calcite precipitation on the strength of sand. J Mater Civ Eng, 2014, 26806014017.
|
| [2] |
NamIH, ChonCM, JungKY, ChoiSG, ChoiH, ParkSS. Calcite precipitation by ureolytic plant (Canavalia ensiformis) extracts as effective biomaterials. KSCE J Civ Eng, 2015, 19: 1620-1625.
|
| [3] |
HamdanN, KavazanjianEJr. Enzyme-induced carbonate mineral precipitation for fugitive dust control. Géotechnique, 2016, 66(7): 546-555.
|
| [4] |
YasuharaH, NeupaneD, HayashiK, OkamuraM. Experiments and predictions of physical properties of sand cemented by enzymatically-induced carbonate precipitation. Soils Found, 2012, 52(3): 539-549.
|
| [5] |
Martinez BC, DeJong JT, Ginn TR, Montoya BM, Barkouki TH Hunt C, & Major D (2013) Experimental optimization of microbial-induced carbonate precipitation for soil improvement. J. Geotech. Geoenviron. Eng 139(4), 587–598. https://doi.org/10.1061/(ASCE)GT.1943-5606.0000787
|
| [6] |
MengH, ShuS, GaoY, YanB, HeJ. Multiple-phase enzyme-induced carbonate precipitation (EICP) method for soil improvement. Eng Geol, 2021, 294. 106374
|
| [7] |
Cui MJ, Lai HJ, Wu SF, & Chu J (2022) Comparison of soil improvement methods using crude soybean enzyme, bacterial enzyme or bacteria-induced carbonate precipitation. Geotechnique 1–9. https://doi.org/10.1680/jgeot.21.00131
|
| [8] |
Cui M, Xiong H, Zheng J, Lv S, Cui M, Fu X, Han S (2023) Variable research on engineering characteristics of soybean urease reinforced sand. KSCE J. Civ. Eng. 1–10. https://doi.org/10.1007/s12205-023-1959-y
|
| [9] |
ZhuX, LiW, ZhanL, HuangM, ZhangQ, AchalV. The large-scale process of microbial carbonate precipitation for nickel remediation from an industrial soil. Environ Pollut, 2016, 219: 149-155.
|
| [10] |
BhattacharyaA, NaikSN, KhareSK. Harnessing the bio-mineralization ability of urease producing Serratia marcescens and Enterobacter cloacae EMB19 for remediation of heavy metal cadmium (II). J Environ Manag, 2018, 215: 143-152.
|
| [11] |
ChenM, LiY, JiangX, ZhaoD, LiuX, ZhouJ, PanX. Study on soil physical structure after the bioremediation of Pb pollution using microbial-induced carbonate precipitation methodology. J Hazard Mater, 2021, 411. 125103
|
| [12] |
HangL, GaoY, van PaassenLA, HeJ, WangL, LiC. Microbially induced carbonate precipitation for improving the internal stability of silty sand slopes under seepage conditions. Acta Geotech, 2023, 18(5): 2719-2732.
|
| [13] |
JongvivatsakulP, JanprasitK, NuaklongP, PungrasmiW, LikitlersuangS. Investigation of the crack healing performance in mortar using microbially induced calcium carbonate precipitation (MICP) method. Constr Build Mater, 2019, 212: 737-744.
|
| [14] |
IntarasoontronJ, PungrasmiW, NuaklongP, JongvivatsakulP, LikitlersuangS. Comparing performances of MICP bacterial vegetative cell and microencapsulated bacterial spore methods on concrete crack healing. Constr Build Mater, 2021, 302. 124227
|
| [15] |
LiuS, YuJ, PengX, CaiY, TuB. Preliminary study on repairing tabia cracks by using microbially induced carbonate precipitation. Construct Build Mater, 2020, 248. 118611
|
| [16] |
KhushnoodRA, QureshiZA, ShaheenN, AliS. Bio-mineralized self-healing recycled aggregate concrete for sustainable infrastructure. Sci Total Environ, 2020, 703. 135007
|
| [17] |
SunX, MiaoL, YuanJ, WangH, WuL. Application of enzymatic calcification for dust control and rainfall erosion resistance improvement. Sci Total Environ, 2021, 759. 143468
|
| [18] |
SunX, MiaoL, WangH, YuanJ, WuL. Research on freeze–thaw and dry–wet durability of enzymatic calcification for surface protection. Environ Sci Pollut Control Ser, 2022, 29(11): 16762-16771.
|
| [19] |
Wang YJ, Jiang NJ, Han XL, Liu K, Du YJ Biochemical, strength and erosional characteristics of coral sand treated by bio-stimulated microbial induced calcite precipitation, Acta Geotechnica (2022) 1–13. https://doi.org/10.1007/s11440-022-01491-y
|
| [20] |
GhasemiP, MontoyaBM. Field implementation of microbially induced calcium carbonate precipitation for surface erosion reduction of a coastal plain sandy slope. J Geotech Geoenviron Eng, 2022, 148904022071.
|
| [21] |
HoangT, AllemanJ, CetinB, ChoiSG. Engineering properties of biocementation coarse-and fine-grained sand catalyzed by bacterial cells and bacterial enzyme. J Mater Civ Eng, 2020, 32404020030.
|
| [22] |
LeeS, KimJ. An experimental study on enzymatic-induced carbonate precipitation using yellow soybeans for soil stabilization. KSCE J Civ Eng, 2020, 24(7): 2026-2037.
|
| [23] |
Xu K, Huang M, Cui M, & Li S (2023) Retarding effect of cementation solution concentration on cementation ability of calcium carbonate crystal induced using crude soybean enzyme. Acta Geotechnica 1–17. https://doi.org/10.1007/s11440-023-01987-1
|
| [24] |
AlmajedA, Khodadadi TirkolaeiH, KavazanjianEJr. Baseline investigation on enzyme-induced calcium carbonate precipitation. Journal of Geotechnical and Geoenvironmental Engineering, 2018, 1441104018081.
|
| [25] |
GaoY, HeJ, TangX, ChuJ. Calcium carbonate precipitation catalyzed by soybean urease as an improvement method for fine-grained soil. Soils Found, 2019, 59(5): 1631-1637.
|
| [26] |
Ossai R, Rivera L, & Bandini P (2020, February) Experimental study to determine an EICP application method feasible for field treatment for soil erosion control. In Geo-congress 2020 (pp. 205–213). Reston, VA: American Society of Civil Engineers. https://doi.org/10.1061/9780784482834.023
|
| [27] |
Kavazanjian E, & Hamdan N (2015) Enzyme induced carbonate precipitation (EICP) columns for ground improvement. In IFCEE 2015 (pp. 2252–2261). https://doi.org/10.1061/9780784479087.209
|
| [28] |
Wang Y, Wang Z, Chen Y, Cao T, Yu X, Rui P (2023) Experimental study on bio-treatment effect of the dredged Yellow River silt based on soybean urease induced calcium carbonate precipitation. J. Build. Eng. 75
|
| [29] |
Polacco JC, & Holland MA (1993) Roles of urease in plant cells. In International review of cytology (vol. 145, pp. 65–103). Academic Press. https://doi.org/10.1016/S0074-7696(08)60425-8
|
| [30] |
WitteCP. Urea metabolism in plants. Plant Sci, 2011, 180(3): 431-438.
|
| [31] |
Krajewska B (2009) Ureases I. Functional, catalytic and kinetic properties: a review. Journal of molecular catalysis B: Enzymatic, 59(1–3), 9–21. https://doi.org/10.1016/j.molcatb.2009.01.003
|
| [32] |
CuiMJ, LaiHJ, HoangT, ChuJ. One-phase-low-pH enzyme induced carbonate precipitation (EICP) method for soil improvement. Acta Geotech, 2021, 16: 481-489.
|
| [33] |
AlmajedA, AbbasH, ArabM, AlsabhanA, HamidW, Al-SalloumY. Enzyme-Induced Carbonate Precipitation (EICP)-Based methods for ecofriendly stabilization of different types of natural sands. J Clean Prod, 2020, 274. 122627
|
| [34] |
MoghalAAB, LateefMA, MohammedAS, S., Ahmad, M., Usman, A. R., & Almajed, A. . Heavy metal immobilization studies and enhancement in geotechnical properties of cohesive soils by EICP technique. Appl Sci, 2020, 10217568.
|
| [35] |
DilrukshiRAN, NakashimaK, KawasakiS. Soil improvement using plant-derived urease-induced calcium carbonate precipitation. Soils Found, 2018, 58(4): 894-910.
|
| [36] |
ImranMA, NakashimaK, KawasakiS. Bio-mediated soil improvement using plant derived enzyme in addition to magnesium ion. Crystals, 2021, 115516.
|
| [37] |
Javadi N, Khodadadi H, Hamdan N, & Kavazanjian Jr E (2018) EICP treatment of soil by using urease enzyme extracted from watermelon seeds. In IFCEE 2018 (pp. 115–124)
|
| [38] |
HoangT, AllemanJ, CetinB, IkumaK, ChoiSG. Sand and silty-sand soil stabilization using bacterial enzyme–induced calcite precipitation (BEICP). Can Geotech J, 2019, 56(6): 808-822.
|
| [39] |
ZhangJ, WangX, ShiL, YinY. Enzyme-induced carbonate precipitation (EICP) combined with lignin to solidify silt in the Yellow River flood area. Constr Build Mater, 2022, 339. 127792
|
| [40] |
WhiffinVS, Van PaassenLA, HarkesMP. Microbial carbonate precipitation as a soil improvement technique. Geomicrobiol J, 2007, 24(5): 417-423.
|
| [41] |
van PaassenLA, GhoseR, van der LindenTJ, van der StarWR, van LoosdrechtMC. Quantifying biomediated ground improvement by ureolysis: large-scale biogrout experiment. Journal of geotechnical and geoenvironmental engineering, 2010, 136(12): 1721-1728.
|
| [42] |
Chu J, Ivanov V, Stabnikov V, & Li B (2014) Microbial method for construction of an aquaculture pond in sand. In Bio-and Chemo-Mechanical Processes in Geotechnical Engineering: Géotechnique Symposium in Print 2013 (pp. 215–219) ICE Publishing. https://doi.org/10.1680/bcmpge.60531.020
|
| [43] |
JiangNJ, SogaK, KuoM. Microbially induced carbonate precipitation for seepage-induced internal erosion control in sand–clay mixtures. Journal of Geotechnical and Geoenvironmental Engineering, 2017, 143304016100.
|
| [44] |
Whiffin VS (2004) Microbial CaCO3 precipitation for the production of biocement (Doctoral dissertation, Murdoch University)
|
Funding
Japan Science and Technology Agency(JPMJSP2136)
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