Efficient Extracellular Production of Phospholipase D in Escherichia coli via Genetic and Process Engineering Modification

Huan Liu , Yang Yang , Tianyi Wang , Yuchen Ning , Li Deng , Fang Wang

Synth. Biol. Eng. ›› 2025, Vol. 3 ›› Issue (2) : 10006

PDF (844KB)
Synth. Biol. Eng. ›› 2025, Vol. 3 ›› Issue (2) :10006 DOI: 10.70322/sbe.2025.10006
research-article
Efficient Extracellular Production of Phospholipase D in Escherichia coli via Genetic and Process Engineering Modification
Author information +
History +
PDF (844KB)

Abstract

Phospholipase D (PLD) is the key enzyme in the catalytic production of rare phospholipids including phosphatidylserine. It was considered a promising method via genetic manipulation for the heterologous production of PLD in the model chassis. Few works focused on the extracellular production of PLD in engineered microbes. Herein, genetic and process engineering modification strategies were developed to achieve secretory production of PLD in Escherichia coli. The N-terminal fusion secretion signal peptide OmpA and the plasmid pBAD-gⅢC with pBAD promoter were proven to be the most effective in promoting the secretory production of PLD. Given the limitation of the cell membrane, the regulation of the key protein expression in the cell membrane as well as the addition of surfactants, were explored to accelerate the secretory production of PLD further. It was indicated that adding 0.5% (w/v) Triton X-100 was more conducive to producing PLD. Finally, fed-batch fermentation was conducted, and the maximum extracellular PLD activity achieved was 33.25 U/mL, which was the highest level reported so far. Our work demonstrated the effectiveness of genetic and process engineering strategies for the secretory production of PLD in E. coli, which provided an alternative platform for the industrial production of PLD.

Keywords

Phospholipase D / Secretory production / Signal peptide / Surfactant

Cite this article

Download citation ▾
Huan Liu, Yang Yang, Tianyi Wang, Yuchen Ning, Li Deng, Fang Wang. Efficient Extracellular Production of Phospholipase D in Escherichia coli via Genetic and Process Engineering Modification. Synth. Biol. Eng., 2025, 3(2): 10006 DOI:10.70322/sbe.2025.10006

登录浏览全文

4963

注册一个新账户 忘记密码

Supplementary Materials

The following supporting information can be found at: https://www.sciepublish.com/article/pii/494, Table S1: Strains used in this study; Table S2: Plasmids used in this study; Table S3: Primers and synthetic oligos used in this study; Figure S1. PLD production, cell growth and glycerol consumption by the engineered ECPLD4 after knockout of mrcB and dacB; Figure S2. Comparison of the effects of different surfactants with 0.1% and 0.5% addition level on PLD production.

Author Contributions

H.L.: Conceptualization, Data curation; H.L. and Y.Y. Writing-original draft; Y.Y., T.W. and Y.N.: Investigation, Methodology; L.D. and F.W.: Writing-review & editing, Supervision, Funding acquisition, Project administration.

Ethics Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data that support the findings of this study are available from the corresponding author upon reasonable request.

Funding

This work was funded by the National Key Research and Development Program of China (2022YFC2106100), the National Natural Science Foundation of China (22208011, 20308020).

Declaration of Competing Interest

The authors declared that they have no conflicts of interest to this work.

References

[1]

Zhang Z, Chen M, Xu W, Zhang W, Zhang T, Guang C, et al. Microbial phospholipase D: Identification, modification and application. Trends Food Sci. Tech. 2020, 96, 145-156.

[2]

Zhang P, Gong J-S, Qin J, Li H, Hou H-J, Zhang X-M, et al. Phospholipids (PLs) know-how: Exploring and exploiting phospholipase D for its industrial dissemination. Crit. Rev. Biotechnol. 2021, 41, 1257-1278.

[3]

Chaung H-C, Chang C-D, Chen P-H, Chang C-J, Liu S-H, Chen C-C. Docosahexaenoic acid and phosphatidylserine improves the antioxidant activities in vitro and in vivo and cognitive functions of the developing brain. Food Chem. 2013, 138, 342-347.

[4]

Moré MI, Freitas U, Rutenberg D. Positive effects of soy lecithin-derived phosphatidylserine plus phosphatidic acid on memory, cognition, daily functioning, and mood in elderly patients with Alzheimer’s disease and dementia. Adv. Ther. 2014, 31, 1247-1262.

[5]

Bie N, Li J, Li C, Lian R, Qin L, Wang C. Protective effect and mechanism of docosahexaenoic acid on the cognitive function in female APP/PS 1 mice. Food Funct. 2021, 12, 11435-11448.

[6]

Argañaraz GA, Palmeira JdF, Argañaraz ER. Phosphatidylserine inside out: A possible underlying mechanism in the inflammation and coagulation abnormalities of COVID-19. Cell Commun. Signal 2020, 18, 190.

[7]

Zhou WB, Gong JS, Hou HJ, Li H, Lu ZM, Xu HY, et al. Mining of a phospholipase D and its application in enzymatic preparation of phosphatidylserine. Bioengineered 2018, 9, 80-89. doi:10.1080/21655979.2017.1308992.

[8]

Nakazawa Y, Sagane Y, Sakurai S, Uchino M, Sato H, Toeda K, et al. Large-scale production of phospholipase D from Streptomyces racemochromogenes and its application to soybean lecithin modification. Appl. Biochem. Biotechnol. 2011, 165, 1494-1506. doi:10.1007/s12010-011-9370-4.

[9]

Zhao Y, Xu Y, Yu F, Zhang C. Identification of a novel phospholipase D gene and effects of carbon sources on its expression in Bacillus cereus ZY12. J. Microbiol. 2018, 56, 264-271. doi:10.1007/s12275-018-7529-1.

[10]

Zhang H, Li X, Liu Q, Sun J, Secundo F, Mao X. Construction of a super-folder fluorescent protein-guided secretory expression system for the production of phospholipase D in Bacillus subtilis. J. Agric. Food Chem. 2021, 69, 6842-6849. doi:10.1021/acs.jafc.1c02089.

[11]

Wu R, Cao J, Liu F, Yang M, Su E. High-level soluble expression of phospholipase D from Streptomyces chromofuscus in Escherichia coli by combinatorial optimization. Electron. J. Biotechnol. 2021, 50, 1-9.

[12]

Zhang H, Chu W, Sun J, Liu Z, Huang WC, Xue C, et al. Combining cell surface display and DNA-shuffling technology for directed evolution of Streptomyces phospholipase D and synthesis of phosphatidylserine. J. Agric. Food Chem. 2019, 67, 13119-13126.

[13]

Yang L, Xu Y, Chen Y, Ying H. Efficient extracellular expression of phospholipase D in Escherichia coli with an optimized signal peptide. IOP Conf. Ser. Mater. Sci. Eng. 2018, 301, 012105.

[14]

Kaur J, Kumar A, Kaur J. Strategies for optimization of heterologous protein expression in E. coli: Roadblocks and reinforcements. Int. J. Biol. Macromol. 2018, 106, 803-822. doi:10.1016/j.ijbiomac.2017.08.080.

[15]

Xiong W, Zeng X, Ho SH, Ling X, Shen L, Yao C, et al. Strategies for achieving high-level and stable production of toxic Streptomyces phospholipase D in Escherichia coli. J. Chem. Technol. Biotechnol. 2019, 94, 1220-1229.

[16]

Xiong W, Luo W, Zhang X, Pan X, Zeng X, Yao C, et al. High expression of toxic Streptomyces phospholipase D in Escherichia coli under salt stress and its mechanism. AIChE J. 2020, 66, e16856.

[17]

Chen S, Xiong W, Zhao X, Luo W, Yan X, Lu Y, et al. Study on the mechanism of efficient extracellular expression of toxic Streptomyces phospholipase D in Brevibacillus choshinensis under Mg2+ stress. Microb. Cell Fact. 2022, 21, 41.

[18]

Hou H-J, Gong J-S, Dong Y-X, Qin J, Li H, Li H, et al. Phospholipase D engineering for improving the biocatalytic synthesis of phosphatidylserine. Bioprocess Biosyst. Eng. 2019, 42, 1185-1194.

[19]

Huang T, Lv X, Li J, Shin H-d, Du G, Liu L. Combinatorial fine-tuning of phospholipase D expression by Bacillus subtilis WB600 for the production of phosphatidylserine. J. Microbiol. Biotechnol. 2018, 28, 2046-2056.

[20]

Liu H, Liu S, Ning Y, Zhang R, Deng L, Wang F. Metabolic engineering of Escherichia coli for efficient production of 1,4-butanediol from crude glycerol. J. Environ. Chem. Eng. 2024, 12, 111660. doi:10.1016/j.jece.2023.111660.

[21]

Zhang P, Gong JS, Xie ZH, Su C, Zhang XM, Rao ZM, et al. Efficient secretory expression of phospholipase D for the high-yield production of phosphatidylserine and phospholipid derivates from soybean lecithin. Syn. Syst. Biotechnol. 2023, 8, 273-280. doi:10.1016/j.synbio.2023.03.006.

[22]

Yamaguchi R, Akter S, Kanehama A, Iwamoto T, Hasegawa M, Ito A, et al. Improvement of solubility of phospholipase D from Streptomyces antibioticus in recombinant Escherichia coli and its application for the enzymatic synthesis of a non-natural plasmalogen. Lett. Appl. Microbiol. 2023, 76, ovad049.

[23]

Güler-Gane G, Kidd S, Sridharan S, Vaughan TJ, Wilkinson TC, Tigue NJ. Overcoming the refractory expression of secreted recombinant proteins in mammalian cells through modification of the signal peptide and adjacent amino acids. PloS ONE 2016, 11, e0155340.

[24]

Grasso S, Dabene V, Hendriks MM, Zwartjens P, Pellaux R, Held M, et al. Signal peptide efficiency: From high-throughput data to prediction and explanation. ACS Synth. Biol. 2023, 12, 390-404.

[25]

Rahmatabadi SS, Askari S, Khademi F, Soleymani B. The study of different signal peptides in improvement of recombinant proteins solubility in E. coli: A review article. Curr. Proteom. 2024, 21, 129-139.

[26]

Shi L, Liu H, Gao S, Weng Y, Zhu L. Enhanced extracellular production of is PETase in Escherichia coli via engineering of the pelB signal peptide. J. Agric. Food Chem. 2021, 69, 2245-2252.

[27]

Liu W, Zhang R, Tian N, Xu X, Cao Y, Xian M, et al. Utilization of alkaline phosphatase PhoA in the bioproduction of geraniol by metabolically engineered Escherichia coli. Bioengineered 2015, 6, 288-293.

[28]

Nielsen DW, Ricker N, Barbieri NL, Allen HK, Nolan LK, Logue CM. Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli. BMC Res. Notes 2020, 13, 51.

[29]

Zhang F, Fan X, Xu K, Wang S, Shi S, Yi L, et al. Development of a bacterial FhuD-Lysozyme-SsrA mediated Autolytic (FLSA) system for effective release of intracellular products. ACS Synth. Biol. 2022, 12, 196-202.

[30]

Bageshwar UK, DattaGupta A, Musser SM. Influence of the TorD signal peptide chaperone on Tat-dependent protein translocation. PloS ONE 2021, 16, e0256715.

[31]

Pouresmaeil M, Azizi-Dargahlou S. Factors involved in heterologous expression of proteins in E. coli host. Arch. Microbiol. 2023, 205, 212.

[32]

Schuster LA, Reisch CR. Plasmids for controlled and tunable high-level expression in E. coli. Appl. Environ. Microb. 2022, 88, e00939-00922.

[33]

Huleani S, Roberts MR, Beales L, Papaioannou EH. Escherichia coli as an antibody expression host for the production of diagnostic proteins: significance and expression. Crit. Rev. Biotechnol. 2022, 42, 756-773.

[34]

Széliová D, Krahulec J, Šafránek M, Lišková V, Turňa J. Modulation of heterologous expression from PBAD promoter in Escherichia coli production strains. J. Biotechnol. 2016, 236, 1-9.

[35]

Studier FW. T7 expression systems for inducible production of proteins from cloned genes in E. coli. Curr. Protoc. Mol. Biol. 2018, 124, e63.

[36]

Nag N, Khan H, Tripathi T. Strategies to improve the expression and solubility of recombinant proteins in E. coli. In Advances in Protein Molecular and Structural Biology Methods; Elsevier: Amsterdam, The Netherlands, 2022; pp. 1-12.

[37]

Yoon S, Seo KS, Park N, Kim C, Dey P, Thornton JA, et al. Development of high-performance inducible and secretory expression vector and host system for enhanced recombinant protein production. Sci. Rep. 2024, 14, 30780.

[38]

Maphosa S, Moleleki LN, Motaung TE. Bacterial secretion system functions: evidence of interactions and downstream implications. Microbiology 2023, 169, 001326.

[39]

Thulin E, Andersson DI. Upregulation of PBP1B and LpoB in cysB mutants confers mecillinam (amdinocillin) resistance in Escherichia coli. Antimicrob. Agents Chemother. 2019, 63, e00612-19. doi:10.1128/AAC.00612-19.

[40]

Yadav AK, Espaillat A, Cava F. Bacterial strategies to preserve cell wall integrity against environmental threats. Front. Microbiol. 2018, 9, 2064.

[41]

Yang H, Wang F, Wang H, Lu X, Shen W, Chen X. Deleting mrdA and mrcB to significantly improve extracellular recombinant protein production in Escherichia coli. Biochem. Eng. J. 2019, 143, 185-195.

[42]

Balantič K, Weiss VU, Allmaier G, Kramar P. Calcium ion effect on phospholipid bilayers as cell membrane analogues. Bioelectrochemistry 2022, 143, 107988.

[43]

Schreier S, Malheiros SV, de Paula E. Surface active drugs: self-association and interaction with membranes and surfactants. Physicochemical and biological aspects. Biochim. Et Biophys. Acta (BBA)-Biomembr. 2000, 1508, 210-234.

[44]

Fitri Kusuma SA, Parwati I, Rostinawati T, Rukayadi Y, Subroto T. Improvement of extracellular secretion efficiency of recombinant proteins from Escherichia coli: Signal peptide fusion, surfactants addition, and phospholipase C coexpression. Drug Invent. Today 2019, 11, 2200.

[45]

Egan AJ, Biboy J, van’t Veer I, Breukink E, Vollmer W. Activities and regulation of peptidoglycan synthases. Philos. Trans. R. Soc. B Biol. Sci. 2015, 370, 20150031.

[46]

Anosov A, Smirnova EY, Korepanova E, Shogenov I. The effects of SDS at subsolubilizing concentrations on the planar lipid bilayer permeability: Two kinds of current fluctuations. Chem. Phys. Lipids 2019, 218, 10-15.

[47]

Nascimento TP, Sales AE, Porto TS, Costa RMPB, Breydo L, Uversky VN, et al. Purification, biochemical, and structural characterization of a novel fibrinolytic enzyme from Mucor subtilissimus UCP 1262. Bioprocess Biosyst. Eng. 2017, 40, 1209-1219.

[48]

Romano S, Nele V, Campani V, De Rosa G, Cinti S. A comprehensive guide to extract information from extracellular vesicles: a tutorial review towards novel analytical developments. Anal. Chim. Acta 2024, 1302, 342473.

[49]

Shah MKA, Azad AK, Nawaz A, Ullah S, Latif MS, Rahman H, et al. Formulation development, characterization and antifungal evaluation of chitosan NPs for topical delivery of voriconazole in vitro and ex vivo. Polymers 2021, 14, 135.

[50]

Sidiq KR. Doctoral Dissertation, Newcastle University, Newcastle upon Tyne,Cell wall metabolism in Bacillus subtilis. UK, 2016.

[51]

Duan X, Zou C, Wu J. Triton X-100 enhances the solubility and secretion ratio of aggregation-prone pullulanase produced in Escherichia coli. Bioresour. Technol. 2015, 194, 137-143.

PDF (844KB)

4

Accesses

0

Citation

Detail

Sections
Recommended

/