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Protein crystal quality oriented disulfide bond engineering

  • Mengchen Pu 1,2 ,
  • Zhijie Xu 2,3,6,7 ,
  • Yao Peng 1,2,4,7 ,
  • Yaguang Hou 2,3,6,7 ,
  • Dongsheng Liu 2 ,
  • Yang Wang 5 ,
  • Haiguang Liu , 5 ,
  • Gaojie Song , 2 ,
  • Zhi-Jie Liu , 1,2,4,6
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  • 1. National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
  • 2. iHuman Institute, ShanghaiTech University, Shanghai 201210, China
  • 3. Institute of Biochemistry and Cell Biology, Shanghai Institute of Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
  • 4. Insititute of Molecular and Clinical Medicine, Kunming Medical University, Kunming 650500, China
  • 5. Complex Systems Division, Beijing Computational Science Research Center, Beijing 100193, China
  • 6. School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China
  • 7. University of Chinese Academy of Sciences, Beijing 100049, China

Published date: 11 Jul 2018

Copyright

2017 The Author(s) 2017. This article is an open access publication

Cite this article

Mengchen Pu , Zhijie Xu , Yao Peng , Yaguang Hou , Dongsheng Liu , Yang Wang , Haiguang Liu , Gaojie Song , Zhi-Jie Liu . Protein crystal quality oriented disulfide bond engineering[J]. Protein & Cell, 2018 , 9(7) : 659 -663 . DOI: 10.1007/s13238-017-0482-7

1
Ceroni A, Passerini A, Vullo A, Frasconi P (2006) DISULFIND: a disulfide bonding state and cysteine connectivity prediction server. Nucleic Acids Res 34:W177–W181

DOI

2
Chrencik JE, Roth CB, Terakado M, Kurata H, Omi R, Kihara Y, Warshaviak D, Nakade S, Asmar-Rovira G, Mileni M (2015) Crystal structure of antagonist bound human lysophosphatidic acid receptor 1. Cell 161:1633–1643

DOI

3
Craig DB, Dombkowski AA (2013) Disulfide by Design 2.0: a webbased tool for disulfide engineering in proteins. BMC Bioinform 14:346

DOI

4
Creighton TE, Zapun A, Darby NJ (1995) Mechanisms and catalysts of disulfide bond formation in proteins. Trends Biotechnol 13:18–23

DOI

5
Dill KA (1990) Dominant forces in protein folding. Biochemistry 29:7133–7155

DOI

6
Fass D (2012) Disulfide bonding in protein biophysics. Annu Rev Biophys 41:63–79

DOI

7
Ferre F, Clote P (2005) DiANNA: a web server for disulfide connectivity prediction. Nucleic Acids Res 33:W230–W232

DOI

8
Lin CJ, Chang CC (2011) LIBSVM: a librrary for support vector machines. http://www.csientuedutw/∼cjlin/libsvm

9
Liu D, Cowburn D (2016) Combining biophysical methods to analyze the disulfide bond in SH2 domain of C-terminal Src kinase. Biophys Rep 2:33–43

DOI

10
Matsumura M, Signor G, Matthews BW (1989) Substantial increase of protein stability by multiple disulphide bonds. Nature 342:291–293

DOI

11
Numata J, Wan M, Knapp EW (2007) Conformational entropy of biomolecules: beyond the quasi-harmonic approximation. Genome Inform 18:192–205

DOI

12
Shaw N, Cheng C, Tempel W, Chang J, Ng J, Wang XY, Perrett S, Rose J, Rao Z, Wang BC (2007) (NZ)CH…O contacts assist crystallization of a ParB-like nuclease. BMC Struct Biol 7:46

DOI

13
Thorsen TS, Matt R, Weis WI, Kobilka BK (2014) Modified T4 lysozyme fusion proteins facilitate G protein-coupled receptor crystallogenesis. Structure 22:1657–1664

DOI

14
Tsai CH, Chan CH, Chen BJ, Kao CY, Liu HL, Hsu JP (2007) Bioinformatics approaches for disulfide connectivity prediction. Curr Protein Pept Sci 8:243–260

DOI

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