Simulating the ion permeation and ion selection for a eukaryotic voltage-gated sodium channel NaVPaS
Published date: 11 Jun 2018
Copyright
Juanrong Zhang , Wenzhi Mao , Yanhui Ren , Rui-Ning Sun , Nieng Yan , Haipeng Gong . Simulating the ion permeation and ion selection for a eukaryotic voltage-gated sodium channel NaVPaS[J]. Protein & Cell, 2018 , 9(6) : 580 -585 . DOI: 10.1007/s13238-018-0522-y
1 |
Ahmed M, Hasani HJ, Ganesan A, Houghton M, Barakat K (2017) Modeling the human Nav1.5 sodium channel: structural and mechanistic insights of ion permeation and drug blockade. Drug Design Development & Therapy 11:2301–2324
|
2 |
Carnevale V, Treptow W, Klein ML (2011) Sodium Ion Binding Sites and Hydration in the Lumen of a Bacterial Ion Channel from Molecular Dynamics Simulations. Journal of Physical Chemistry Letters 2:2504–2508
|
3 |
Li Y, Gong H (2015) Theoretical and simulation studies on voltagegated sodium channels. Protein Cell 6:413–422
|
4 |
Lindeberg T (1998) Edge detection and ridge detection with automatic scale selection. International Journal of Computer Vision 30:117–156
|
5 |
Mahdavi S, Kuyucak S (2015) Mechanism of Ion Permeation in Mammalian Voltage-Gated Sodium Channels. Plos One 10: e0133000
|
6 |
Mccusker EC, Bagnéris C, Naylor CE, Cole AR, D’Avanzo N, Nichols CG, Wallace BA (2012) Structure of a bacterial voltagegated sodium channel pore reveals mechanisms of opening and closing. Nature Communications 3:1102
|
7 |
Mishchenko Y (2009) Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs. Journal of Neuroscience Methods 176:276–289
|
8 |
Pan AC, Sezer D, Roux B (2008) Finding transition pathways using the string method with swarms of trajectories. Journal of Physical Chemistry B 112:3432–3440
|
9 |
Payandeh J, Scheuer T, Zheng N, Catterall WA (2011) The crystal structure of a voltage-gated sodium channel. Nature 475:353
|
10 |
Schlief T, Schönherr R, Imoto K, Heinemann SH (1996) Pore properties of rat brain II sodium channels mutated in the selectivity filter domain. European Biophysics Journal 25:75–91
|
11 |
Shen H, Zhou Q, Pan X, Li Z, Wu J, Yan N (2017) Structure of a eukaryotic voltage-gated sodium channel at near-atomic resolution. Science 355:eaal4326
|
12 |
Sun YM, Favre I, Schild L, Moczydlowski E (1997) On the structural basis for size-selective permeation of organic cations through the voltage-gated sodium channel : effect of alanine mutations at the DEKA locus on selectivity, inhibition by Ca2+ and H+, and molecular sieving. Journal of General Physiology 110:693–715
|
13 |
Xia M, Liu H, Li Y, Yan N, Gong H (2013) The mechanism of Na+/K+ selectivity in mammalian voltage-gated sodium channels based on molecular dynamics simulation. Biophysical Journal 104:2401
|
14 |
Yan Z, Zhou Q, Wang L, Wu J, Zhao Y, Huang G, Peng W, Shen H, Lei J, Yan N (2017) Structure of the Nav1.4-β1 complex from electric eel. Cell 170:470
|
15 |
Zhang X, Ren W, Decaen P, Yan C, Tao X, Tang L, Wang J, Hasegawa K, Kumasaka T, He J (2012) Crystal structure of an orthologue of the NaChBac voltage-gated sodium channel. Nature 486:130–134
|
/
〈 | 〉 |