A hnRNPA2B1 agonist effectively inhibits HBV and SARS-CoV-2 omicron in vivo

Daming Zuo, Yu Chen, Jian-piao Cai, Hao-Yang Yuan, Jun-Qi Wu, Yue Yin, Jing-Wen Xie, Jing-Min Lin, Jia Luo, Yang Feng, Long-Jiao Ge, Jia Zhou, Ronald J. Quinn, San-Jun Zhao, Xing Tong, Dong-Yan Jin, Shuofeng Yuan, Shao-Xing Dai, Min Xu

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Protein Cell ›› 2023, Vol. 14 ›› Issue (1) : 37-50. DOI: 10.1093/procel/pwac027
RESEARCH ARTICLE
RESEARCH ARTICLE

A hnRNPA2B1 agonist effectively inhibits HBV and SARS-CoV-2 omicron in vivo

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Abstract

The twenty-first century has already recorded more than ten major epidemics or pandemics of viral disease, including the devastating COVID-19. Novel effective antivirals with broad-spectrum coverage are urgently needed. Herein, we reported a novel broad-spectrum antiviral compound PAC5. Oral administration of PAC5 eliminated HBV cccDNA and reduced the large antigen load in distinct mouse models of HBV infection. Strikingly, oral administration of PAC5 in a hamster model of SARS-CoV-2 omicron (BA.1) infection significantly decreases viral loads and attenuates lung inflammation. Mechanistically, PAC5 binds to a pocket near Asp49 in the RNA recognition motif of hnRNPA2B1. PAC5-bound hnRNPA2B1 is extensively activated and translocated to the cytoplasm where it initiates the TBK1-IRF3 pathway, leading to the production of type I IFNs with antiviral activity. Our results indicate that PAC5 is a novel small-molecule agonist of hnRNPA2B1, which may have a role in dealing with emerging infectious diseases now and in the future.

Keywords

hnRNPA2B1 / PAC5 / HBV / SARS-CoV-2 omicron / TBK1-IRF3 pathway / type I IFNs

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Daming Zuo, Yu Chen, Jian-piao Cai, Hao-Yang Yuan, Jun-Qi Wu, Yue Yin, Jing-Wen Xie, Jing-Min Lin, Jia Luo, Yang Feng, Long-Jiao Ge, Jia Zhou, Ronald J. Quinn, San-Jun Zhao, Xing Tong, Dong-Yan Jin, Shuofeng Yuan, Shao-Xing Dai, Min Xu. A hnRNPA2B1 agonist effectively inhibits HBV and SARS-CoV-2 omicron in vivo. Protein Cell, 2023, 14(1): 37‒50 https://doi.org/10.1093/procel/pwac027

References

[1]
Abedi MR, Dixon S, Guyon T, et al. Predicting COVID-19 vaccine efficacy from neutralizing antibody levels. medRxiv 2021: 1- 12.
[2]
Alarcon CR, Goodarzi H, Lee H, et al. HNRNPA2B1 is a mediator of m(6)A-dependent nuclear RNA processing events. Cell 2015; 162: 1299- 1308.
[3]
Amin OE, Colbeck EJ, Daffis S, et al. Therapeutic potential of TLR8 agonist GS-9688 (Selgantolimod) in chronic hepatitis B: remodeling of antiviral and regulatory mediators. Hepatology (Hoboken, NJ, U S) 2021; 74: 55- 71.
[4]
Beigel JH, Tomashek KM, Dodd LE, et al. Remdesivir for the treatment of COVID-19-final report. N Engl J Med 2020; 383: 1813- 1826.
[5]
Chen SF, Zhou YQ, Chen YR, et al. fastp: An ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 2018; 34: 884- 890.
[6]
Chiba S, Kiso M, Nakajima N, et al. Co-administration of favipiravir and the remdesivir metabolite GS-441524 effectively reduces SARS-CoV-2 replication in the lungs of the syrian hamster model. mBio, 2022; e0304421.
[7]
Daffis S, Balsitis S, Chamberlain J, et al. Toll-like receptor 8 agonist GS-9688 induces sustained efficacy in the woodchuck model of chronic hepatitis B. Hepatology (Hoboken, NJ, U S) 2021; 73: 53- 67.
[8]
Fanning Gregory C, Zoulim F, Hou J, et al. Therapeutic strategies for hepatitis B virus infection: towards a cure. Nat Rev Drug Discov 2019; 18: 827- 844.
[9]
Gardner BJ, Kilpatrick AM. Third doses of COVID-19 vaccines reduce infection and transmission of SARS-CoV-2 and could prevent future surges in some populations. medRxiv 2021: 1- 24.
[10]
Gonzalez-Navajas JM, Lee J, David M, et al. Immunomodulatory functions of type I interferons. Nat Rev Immunol 2012; 12: 125- 135.
[11]
Gordon H, Ajamian L, Valiente-Echeverria F, et al. Depletion of hnRNP A2/B1 overrides the nuclear retention of the HIV-1 genomic RNA. RNA Biol 2013; 10: 1714- 1725.
[12]
Guo Q, Zhao Y, Li J, et al. Induction of alarmin S100A8/A9 mediates activation of aberrant neutrophils in the pathogenesis of COVID-19. Cell Host Microbe 2021; 29: 222- 235.
[13]
Kim D, Paggi JM, Park C, et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 2019; 37: 907- 915.
[14]
Le Guilloux V, Schmidtke P, Tuffery P. Fpocket: an open source platform for ligand pocket detection. BMC Bioinform 2009; 10: 168.
[15]
Ledford H. Can drugs reduce the risk of long COVID? What scientists know so far. Nature (London, U K) 2022; 604: 20- 21.
[16]
Lee JS, Shin EC. The type I interferon response in COVID-19: implications for treatment. Nat Rev Immunol 2020; 20: 585- 586.
[17]
Liao Y, Smyth GK, Shi W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 2014; 30: 923- 930.
[18]
Liu Y, Shi SL. The roles of hnRNP A2/B1 in RNA biology and disease. Wiley Interdiscip Rev RNA 2021; 12: e1612.
[19]
McNab F, Mayer-Barber K, Sher A, et al. Type I interferons in infectious disease. Nat Rev Immunol 2015; 15: 87- 103.
[20]
Mueller U, Steinhoff U, Reis LFL, et al. Functional role of type I and type II interferons in antiviral defense. Science (Washington, DC) 1994; 264: 1918- 1921.
[21]
Newman DJ, Cragg GM. Natural products as sources of new drugs over the nearly four decades from 01/1981 to 09/2019. J Nat Prod 2020; 83: 770- 803.
[22]
Owen DR, Allerton CMN, Anderson AS, et al. An oral SARS-CoV-2 M-pro inhibitor clinical candidate for the treatment of COVID-19. Science 2021; 374: 1586- 1593.
[23]
Planas D, Saunders N, Maes P, et al. Considerable escape of SARS-CoV-2 Omicron to antibody neutralization. Nature 2022; 602: 671- 675.
[24]
Ritchie ME, Phipson B, Wu D, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 2015; 43: e47.
[25]
Sadler AJ, Williams BRG. Interferon-inducible antiviral effectors. Nat Rev Immunol 2008; 8: 559- 568.
[26]
Schmidt A, Peters S, Knaus A, et al. TBK1 and TNFRSF13B mutations and an autoinflammatory disease in a child with lethal COVID-19. NPJ Genom Med 2021; 6: 55.
[27]
Sleigh A. Twenty-first century plague: the story of SARS. Nature 2005; 435: 886- 887.
[28]
Taft J, Markson M, Legarda D, et al. Human TBK1 deficiency leads to autoinflammation driven by TNF-induced cell death. Cell 2021; 184: 4447- 4463 e4420.
[29]
Tao KM, Tzou PL, Nouhin J, et al. The biological and clinical significance of emerging SARS-CoV-2 variants. Nat Rev Genet 2021; 22: 757- 773.
[30]
Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem 2010; 31: 455- 461.
[31]
Villarroya-Beltri C, Gutierrez-Vazquez C, Sanchez-Cabo F, et al. Sumoylated hnRNPA2B1 controls the sorting of miRNAs into exosomes through binding to specific motifs. Nat Commun 2013; 4: 2980.
[32]
Wahl A, Gralinski LE, Johnson CE, et al. SARS-CoV-2 infection is effectively treated and prevented by EIDD-2801. Nature 2021; 591: 451- 457.
[33]
Wang L, Wen M, Cao X. Nuclear hnRNPA2B1 initiates and amplifies the innate immune response to DNA viruses. Science 2019; 365: 656- +.
[34]
Wu Y, Ma L, Zhuang Z, et al. Main protease of SARS-CoV-2 serves as a bifunctional molecule in restricting type I interferon antiviral signaling. Signal Transduct Target Ther 2020; 5: 221.
[35]
Wu B, Su S, Patil DP, et al. Molecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1. Nat Commun 2018; 9: 420.
[36]
Xia H, Cao Z, Xie X, et al. Evasion of type I interferon by SARS-CoV-2. Cell Rep 2020b; 33: 108234.
[37]
Xia C, Tang W, Geng P, et al. Baicalin down-regulating hepatitis B virus transcription depends on the liver-specific HNF4α-HNF1α axis. Toxicol Appl Pharmacol 2020a; 403: 115131.
[38]
Yang D, Liu LC, Zhu DM, et al. A mouse model for HBV immunotolerance and immunotherapy. Cell Mol Immunol 2014; 11: 71- 78.
[39]
Ying C, Li Y, Leung CH, et al. Unique antiviral mechanism discovered in anti-hepatitis B virus research with a natural product analogue. Proc Natl Acad Sci USA 2007; 104: 8526- 8531.
[40]
Yu G, Wang LG, Han Y, et al. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 2012; 16: 284- 287.
[41]
Yuan S, Yin X, Meng X, et al. Clofazimine broadly inhibits coronaviruses including SARS-CoV-2. Nature 2021; 593: 418- 423.
[42]
Zhang Q, Bastard P, Effort CHG, et al. Human genetic and immunological determinants of critical COVID-19 pneumonia. Nature(London, U K) 2022; 603: 587- 598.
[43]
Zhou P, Yang XL, Wang XG, et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 2020; 579: 270- 273.
[44]
Zhou D, Chan JF, Zhou B, et al. Robust SARS-CoV-2 infection in nasal turbinates after treatment with systemic neutralizing antibodies. Cell Host Microbe 2021; 29: 551- 563 e555.

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2022 The Author(s) 2022. Published by Oxford University Press on behalf of Higher Education Press.
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