A peep into mitochondrial disorder:multifaceted from mitochondrial DNAmutations to nuclear gene modulation

Chao Chen, Ye Chen, Min-Xin Guan

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Protein Cell ›› 2015, Vol. 06 ›› Issue (12) : 862-870. DOI: 10.1007/s13238-015-0175-z
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A peep into mitochondrial disorder:multifaceted from mitochondrial DNAmutations to nuclear gene modulation

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Abstract

Mitochondrial genome is responsible for multiple human diseases in a maternal inherited pattern, yet phenotypes of patients in a same pedigree frequently vary largely. Genes involving in epigenetic modification, RNA processing, and other biological pathways, rather than “threshold effect” and environmental factors, provide more specific explanation to the aberrant phenotype. Thus, the double hit theory, mutations both in mitochondrial DNA and modifying genes aggravating the symptom, throws new light on mitochondrial dysfunction processes. In addition, mitochondrial retrograde signaling pathway that leads to reconfiguration of cell metabolism to adapt defects in mitochondria may as well play an active role. Here we review selected examples of modifier genes and mitochondrial retrograde signaling in mitochondrial disorders, which refine our understanding and will guide the rational design of clinical therapies.

Keywords

mitochondrial disorder / mitochondrial DNA mutation / nuclear modifier gene / mitochondrial retrograde signaling

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Chao Chen, Ye Chen, Min-Xin Guan. A peep into mitochondrial disorder:multifaceted from mitochondrial DNAmutations to nuclear gene modulation. Protein Cell, 2015, 06(12): 862‒870 https://doi.org/10.1007/s13238-015-0175-z

References

[1]
Abbott JA, Francklyn CS, Robey-Bond SM (2014) Transfer RNA and human disease. Front Genet 5:158
[2]
Arnould T, Vankoningsloo S, Renard P, Houbion A, Ninane N,Demazy C (2002) CREB activation induced by mitochondrial dysfunction is a new signaling pathway that impairs cell proliferation. EMBO J 21:53–63
CrossRef Google scholar
[3]
Bers DM (2008) Calcium cycling and signaling in cardiac myocytes. Annu Rev Physiol 70:23–49
CrossRef Google scholar
[4]
Biswas G, Guha M, Avadhani NG (2005) Mitochondria-to-nucleus stress signaling in mammalian cells: nature of nuclear gene targets, transcription regulation, and induced resistance to apoptosis. Gene 354:132–139
CrossRef Google scholar
[5]
Butow RA, Avadhani NG (2004) Mitochondrial signaling: the retrograde response. Mol Cell 14:1–15
CrossRef Google scholar
[6]
Bykhovskaya Y, Mengesha E, Wang D, Yang H, Estivill X, Shohat M (2004) Human mitochondrial transcription factor B1 as a modifier gene for hearing loss associated with the mitochondrial A1555G mutation. Mol Genet Metab 82:27–32
CrossRef Google scholar
[7]
Chan DC (2006) Mitochondria: dynamic organelles in disease, aging, and development. Cell 125:1241–1252
CrossRef Google scholar
[8]
DiMauro S, Schon EA (2003) Mitochondrial respiratory-chain diseases. N Engl J Med 348:2656–2668
CrossRef Google scholar
[9]
Diodato D, Melchionda L, Haack TB, Dallabona C, Baruffini E, Donnini C (2014) VARS2 and TARS2 mutations in patients with mitochondrial encephalomyopathies. Hum Mutat 35:983–989
CrossRef Google scholar
[10]
Enriquez JA, Chomyn A, Attardi G (1995) MtDNA mutation in MERRF syndrome causes defective aminoacylation of tRNA(Lys) and premature translation termination. Nat Genet 10:47–55
CrossRef Google scholar
[11]
Giordano C, Iommarini L, Giordano L, Maresca A, Pisano A, Valentino ML (2014) Efficient mitochondrial biogenesis drives incomplete penetrance in Leber's hereditary optic neuropathy. Brain 137:335–353
CrossRef Google scholar
[12]
Gomes AP, Price NL, Ling AJY, Moslehi JJ, Montgomery MK, Rajman L (2013) Declining NAD+ induces a pseudohypoxic state disrupting nuclear-mitochondrial communication during aging. Cell 155:1624–1638
CrossRef Google scholar
[13]
Goto Y, Nonaka I, Horai S (1990) A mutation in the tRNALeu(UUR) gene associated with the MELAS subgroup of mitochondrial encephalomyopathies. Nature 348:651–653
CrossRef Google scholar
[14]
Guan M-X, Fischel-Ghodsian N, Attardi G (1996) Biochemical evidence for nuclear gene involvement in phenotype of nonsyndromic deafness associated with mitochondrial 12S rRNA mutation. Hum Mol Genet 5:963–971
CrossRef Google scholar
[15]
Guan MX, Fischel-Ghodsian N, Attardi G (2001) Nuclear background determines biochemical phenotype in the deafnessassociated mitochondrial 12S rRNA mutation. Hum Mol Genet 10:573–580
CrossRef Google scholar
[16]
Guan MX, Yan Q, Li X, Bykhovskaya Y, Gallo-Teran J, Hajek P (2006) Mutation in TRMU related to transfer RNA modification modulates the phenotypic expression of the deafness-associated mitochondrial 12S ribosomal RNA mutations. Am J Hum Genet 79:291–302
CrossRef Google scholar
[17]
Guha M, Avadhani NG (2013) Mitochondrial retrograde signaling at the crossroads of tumor bioenergetics, genetics and epigenetics. Mitochondrion 13:577–591
CrossRef Google scholar
[18]
Gusella JF, MacDonald ME, Lee J-M (2014) Genetic modifiers of Huntington’s disease. Mov Disord 29:1359–1365
CrossRef Google scholar
[19]
Harding AE, Sweeney MG, Govan GG, Riordan-Eva P (1995) Pedigree analysis in Leber hereditary optic neuropathy families with a pathogenic mtDNA mutation. Am J Hum Genet 57:77–86
[20]
Holt IJ, Harding AE, Morgan-Hughes JA (1988) Deletions of muscle mitochondrial DNA in patients with mitochondrial myopathies. Nature 331:717–719
CrossRef Google scholar
[21]
Koopman WJ, Willems PH, Smeitink JA (2012) Monogenic mitochondrial disorders. N Engl J Med 366:1132–1141
CrossRef Google scholar
[22]
Li X, Guan M-X (2003) Identification and characterization of mouse GTPBP3 gene encoding a mitochondrial GTP-binding protein involved in tRNA modification. Biochem Biophys Res Commun 312:747–754
CrossRef Google scholar
[23]
Li X, Li R, Lin X, Guan MX (2002) Isolation and characterization of the putative nuclear modifier gene MTO1 involved in the pathogenesis of deafness-associated mitochondrial 12 S rRNA A1555G mutation. J Biol Chem 277:27256–27264
CrossRef Google scholar
[24]
Luhmann UF, Carvalho LS, Holthaus SM, Cowing JA, Greenaway S, Chu CJ (2015) The severity of retinal pathology in homozygous Crb1rd8/rd8 mice is dependent on additional genetic factors. Hum Mol Genet 24:128–141
CrossRef Google scholar
[25]
McMillan HJ, Humphreys P, Smith A, Schwartzentruber J, Chakraborty P, Bulman DE, . (2014) Congenital visual impairment and progressive microcephaly due to lysyl-transfer ribonucleic acid (rna) synthetase (kars) mutations: the expanding phenotype of aminoacyl-transfer RNA synthetase mutations in human disease. J Child Neurol.
CrossRef Google scholar
[26]
Meseguer S, Martinez-Zamora A, Garcia-Arumi E, Andreu AL, Armengod ME (2015) The ROS-sensitive microRNA-9/9* controls the expression of mitochondrial tRNA-modifying enzymes and is involved in the molecular mechanism of MELAS syndrome. Hum Mol Genet 24:167–184
CrossRef Google scholar
[27]
Nakajima J, Eminoglu TF, Vatansever G, Nakashima M, Tsurusaki Y, Saitsu H (2014) A novel homozygous YARS2 mutation causes severe myopathy, lactic acidosis, and sideroblastic anemia 2. J Hum Genet 59:229–232
CrossRef Google scholar
[28]
Newmeyer DD, Ferguson-Miller S (2003) Mitochondria: releasing power for life and unleashing the machineries of death. Cell 112:481–490
CrossRef Google scholar
[29]
Nunnari J, Suomalainen A (2012) Mitochondria: in sickness and in health. Cell 148:1145–1159
CrossRef Google scholar
[30]
Owusu-Ansah E, Song W, Perrimon N (2013) Muscle mitohormesis promotes longevity via systemic repression of insulin signaling. Cell 155:699–712
CrossRef Google scholar
[31]
Parikh VS, Morgan MM, Scott R, Clements LS, Butow RA (1987) The mitochondrial genotype can influence nuclear gene expression in yeast. Science 235:576–580
CrossRef Google scholar
[32]
Parson W, Bandelt HJ (2007) Extended guidelines for mtDNA typing of population data in forensic science. Forensic Sci Int Genet 1:13–19
CrossRef Google scholar
[33]
Pellegrino MW, Nargund AM, Haynes CM (2013) Signaling the mitochondrial unfolded protein response. Biochim et Biophys Acta 1833:410–416
CrossRef Google scholar
[34]
Perli E, Giordano C, Pisano A, Montanari A, Campese AF, Reyes A (2014) The isolated carboxy-terminal domain of human mitochondrial leucyl-tRNA synthetase rescues the pathological phenotype of mitochondrial tRNA mutations in human cells. EMBO Mol Med 6:169–182
[35]
Picard M, Zhang J, Hancock S, Derbeneva O, Golhar R, Golik P (2014) Progressive increase in mtDNA 3243A>G heteroplasmy causes abrupt transcriptional reprogramming. Proc Natl Acad Sci USA 111:E4033–E4042
[36]
Prezant TR, Agapian JV, Bohlman MC, Bu X, Oztas S, Qiu WQ (1993) Mitochondrial ribosomal RNA mutation associated with both antibiotic-induced and non-syndromic deafness. Nat Genet 4:289–294
CrossRef Google scholar
[37]
Raimundo N (2014) Mitochondrial pathology: stress signals from the energy factory. Trends Mol Med 20:282–292
CrossRef Google scholar
[38]
Raimundo N, Song L, Shutt TE, McKay SE, Cotney J, Guan MX (2012) Mitochondrial stress engages E2F1 apoptotic signaling to cause deafness. Cell 148:716–726
CrossRef Google scholar
[39]
Riordan-Eva P, Sanders MD, Govan GG, Sweeney MG, Da Costa J, Harding AE (1995) The clinical features of Leber’s hereditary optic neuropathy defined by the presence of a pathogenic mitochondrial DNA mutation. Brain 118(Pt 2):319–337
CrossRef Google scholar
[40]
Ross JM, Stewart JB, Hagstrom E, Brene S, Mourier A, Coppotelli G (2013) Germline mitochondrial DNA mutations aggravate ageing and can impair brain development. Nature 501:412–415
CrossRef Google scholar
[41]
Ross JM, Coppotelli G, Hoffer BJ, Olson L (2014) Maternally transmitted mitochondrial DNA mutations can reduce lifespan. Sci Rep4:6569
CrossRef Google scholar
[42]
Rubinsztein DC, Marino G, Kroemer G (2011) Autophagy and aging. Cell 146:682–695
CrossRef Google scholar
[43]
Ryan MT, Hoogenraad NJ (2007) Mitochondrial-nuclear communications. Annu Rev Biochem 76:701–722
CrossRef Google scholar
[44]
Samuels DC, Schon EA, Chinnery PF (2004) Two direct repeats cause most human mtDNA deletions. Trends Genet 20:393–398
CrossRef Google scholar
[45]
Suzuki T, Nagao A (2011) Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases. Annu Rev Genet 45:299–329
CrossRef Google scholar
[46]
Taylor RW, Turnbull DM (2005) Mitochondrial DNA mutations in human disease. Nat Rev Genet 6:389–402
CrossRef Google scholar
[47]
van den Ouweland JMW, Lemkes HHPJ, Ruitenbeek W, Sandkuijl LA, de Vijlder MF, Struyvenberg PAA (1992) Mutation in mitochondrial tRNALeu(UUR) gene in a large pedigree with maternally transmitted type II diabetes mellitus and deafness. Nat Genet 1:368–371
CrossRef Google scholar
[48]
Wallace DC (2005) A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine. Annu Rev Genet 39:359–407
CrossRef Google scholar
[49]
Wallace DC (2012) Mitochondria and cancer. Nature reviews. Cancer 12:685–698
[50]
Wallace DC, Chalkia D (2013) Mitochondrial DNA genetics and the heteroplasmy conundrum in evolution and disease. Cold Spring Harb Perspect Biol 5:a021220
[51]
Yasukawa T, Suzuki T, Ishii N, Ueda T, Ohta S, Watanabe K (2000a) Defect in modification at the anticodon wobble nucleotide of mitochondrial tRNA(Lys) with the MERRF encephalomyopathy pathogenic mutation. FEBS Lett 467:175–178
[52]
Yasukawa T, Suzuki T, Ueda T, Ohta S, Watanabe K (2000b) Modification defect at anticodon wobble nucleotide of mitochondrial tRNAs(Leu)(UUR) with pathogenic mutations of mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes. J Biol Chem 275:4251–4257
[53]
Youle RJ, Strasser A (2008) The BCL-2 protein family: opposing activities that mediate cell death. Nat Rev Mol Cell Biol 9:47–59
CrossRef Google scholar
[54]
Zhao H, Li R, Wang Q, Yan Q, Deng JH, Han D (2004) Maternally inherited aminoglycoside-induced and nonsyndromic deafness is associated with the novel C1494T mutation in the mitochondrial 12S rRNA gene in a large Chinese family. Am J Hum Genet 74:139–152
CrossRef Google scholar

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2014 This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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