Landscape of protein domain interactome

Ting Zhang, Shuang Li, Wei Zuo

PDF(628 KB)
PDF(628 KB)
Protein Cell ›› 2015, Vol. 6 ›› Issue (8) : 610-614. DOI: 10.1007/s13238-015-0158-0
LETTER
LETTER

Landscape of protein domain interactome

Author information +
History +

Cite this article

Download citation ▾
Ting Zhang, Shuang Li, Wei Zuo. Landscape of protein domain interactome. Protein Cell, 2015, 6(8): 610‒614 https://doi.org/10.1007/s13238-015-0158-0

References

[1]
Beckmann G, Bork P (1993) An adhesive domain detected in functionally diverse receptors. Trends Biochem Sci 18: 40-41
CrossRef Google scholar
[2]
Chothia C (1992) Proteins. one thousand families for the molecular biologist. Nature 357: 543-544
CrossRef Google scholar
[3]
Finn RD, Marshall M, Bateman A (2005) iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21: 410-412
CrossRef Google scholar
[4]
Gilbert SF (1986) Cell surface receptors in development and immunity: a speculative review. Dev Comp Immunol 10: 279-284
CrossRef Google scholar
[5]
Graham TA, Clements WK, Kimelman D, Xu W (2002) The crystal structure of the beta-catenin/ICAT complex reveals the inhibitory mechanism of ICAT. Mol Cell 10: 563-571
CrossRef Google scholar
[6]
Koonin EV, Wolf YI, Karev GP (2002) The structure of the protein universe and genome evolution. Nature 420: 218-223
CrossRef Google scholar
[7]
Kupiec-Weglinski JW, Heemann UW, Coito AJ, Tullius SG, Tilney NL, de Sousa M (1993) Adhesion molecule interaction with extracellular matrix. Exp Nephrol 1: 78-82
[8]
Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R (1998) Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res 26: 320-322
CrossRef Google scholar
[9]
Stein A, Russell RB, Aloy P (2005) 3did: interacting protein domains of known three-dimensional structure. Nucleic Acids Res 33: D413-D417
CrossRef Google scholar
[10]
Tinti M, Kiemer L, Costa S, Miller ML, Sacco F, Olsen JV, Carducci M, Paoluzi S, Langone F, Workman CT (2013) The SH2 domain interaction landscape. Cell Rep 3: 1293-1305
CrossRef Google scholar
[11]
Wang X, Wei X, Thijssen B, Das J, Lipkin SM, Yu H (2012) Threedimensional reconstruction of protein networks provides insight into human genetic disease. Nat Biotechnol 30: 159-164
CrossRef Google scholar
[12]
Yellaboina S, Tasneem A, Zaykin DV, Raghavachari B, Jothi R (2011) DOMINE: a comprehensive collection of known and predicted domain-domain interactions. Nucleic Acids Res 39: D730-D735
CrossRef Google scholar
[13]
Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M (2007) The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 3: e59
CrossRef Google scholar
[14]
Zmasek CM, Godzik A (2011) Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires. Genome Biol 12: R4
CrossRef Google scholar

RIGHTS & PERMISSIONS

2014 This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
AI Summary AI Mindmap
PDF(628 KB)

Accesses

Citations

Detail

Sections
Recommended

/