Tip-to-tip interaction in the crystal packing of PACSIN 2 is important in regulating tabulation activity

Xiaoyun Bai1,2, Xiaofeng Zheng1,2()

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Protein Cell ›› 2013, Vol. 4 ›› Issue (9) : 695-701. DOI: 10.1007/s13238-013-3041-x
RESEARCH ARTICLE
RESEARCH ARTICLE

Tip-to-tip interaction in the crystal packing of PACSIN 2 is important in regulating tabulation activity

  • Xiaoyun Bai1,2, Xiaofeng Zheng1,2()
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Abstract

The F-BAR domain containing proteins PACSINs are cytoplasmic phosphoproteins involved in various membrane deformations, such as actin reorganization, vesicle transport and microtubule movement. Our previous study shows that all PACSINs are composed of crescent shaped dimers with two wedge loops, and the wedge loopmediated lateral interaction between neighboring dimmers is important for protein packing and tubulation activity. Here, from the crystal packing of PACSIN 2, we observed a tight tip-to-tip interaction, in addition to the wedge loopmediated lateral interaction. With this tip-to-tip interaction, the whole packing of PACSIN 2 shows a spiral-like assembly with a central hole from the top view. Elimination of this tip-to-tip connection inhibited the tubulation function of PACSIN 2, indicating that tip-to-tip interaction plays an important role in membrane deformation activity. Together with our previous study, we proposed a packing model for the assembly of PACSIN 2 on membrane, where the proteins are connected by tip-to-tip and wedge loop-mediated lateral interactions on the surface of membrane to generate various diameter tubules.

Keywords

PACSIN 2 / crystal packing / tip-to-tip interaction / tubulation / wedge loop

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Xiaoyun Bai, Xiaofeng Zheng. Tip-to-tip interaction in the crystal packing of PACSIN 2 is important in regulating tabulation activity. Prot Cell, 2013, 4(9): 695‒701 https://doi.org/10.1007/s13238-013-3041-x

References

[1] Bai, X., Meng, G., Luo, M., and Zheng, X. (2012). Rigidity of wedge loop in PACSIN 3 protein is a key factor in dictating diameters of tubules. J Biol Chem 287, 22387-22396 .10.1074/jbc.M112.358960
[2] Braun, A., Pinyol, R., Dahlhaus, R., Koch, D., Fonarev, P., Grant, B.D., Kessels, M.M., and Qualmann, B. (2005). EHD proteins associate with syndapin I and II and such interactions play a crucial role in endosomal recycling. Mol Biol Cell 16, 3642-3658 .10.1091/mbc.E05-01-0076
[3] Collaborative Computational Project, N. (1994). The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50, 760-763 .10.1107/S0907444994003112
[4] Cousin, H., Desimone, D.W., and Alfandari, D. (2008). PACSIN2 regulates cell adhesion during gastrulation in Xenopus laevis. Dev Biol 319, 86-99 .10.1016/j.ydbio.2008.04.007
[5] Damke, H., Baba, T., Warnock, D.E., and Schmid, S.L. (1994). Induction of mutant dynamin specifically blocks endocytic coated vesicle formation. J Cell Biol 127, 915-934 .10.1083/jcb.127.4.915
[6] de Kreuk, B.J., Anthony, E.C., Geerts, D., and Hordijk, P.L. (2012). The F-BAR protein PACSIN2 regulates epidermal growth factor receptor internalization. J Biol Chem 287, 43438-43453 .10.1074/jbc.M112.391078
[7] de Kreuk, B.J., Nethe, M., Fernandez-Borja, M., Anthony, E.C., Hensbergen, P.J., Deelder, A.M., Plomann, M., and Hordijk, P.L. (2011). The F-BAR domain protein PACSIN2 associates with Rac1 and regulates cell spreading and migration. J Cell Sci 124, 2375-2388 .10.1242/jcs.080630
[8] Frost, A., Perera, R., Roux, A., Spasov, K., Destaing, O., Egelman, E.H., De Camilli, P., and Unger, V.M. (2008). Structural basis of membrane invagination by F-BAR domains. Cell 132, 807-817 .10.1016/j.cell.2007.12.041
[9] Grimm-Gunter, E.M., Milbrandt, M., Merkl, B., Paulsson, M., and Plomann, M. (2008). PACSIN proteins bind tubulin and promote microtubule assembly. Exp Cell Res 314, 1991-2003 .10.1016/j.yexcr.2008.03.015
[10] Halbach, A., Morgelin, M., Baumgarten, M., Milbrandt, M., Paulsson, M., and Plomann, M. (2007). PACSIN 1 forms tetramers via its Nterminal F-BAR domain. FEBS J 274, 773-782 .10.1111/j.1742-4658.2006.05622.x
[11] Hansen, C.G., Howard, G., and Nichols, B.J. (2011). Pacsin 2 is recruited to caveolae and functions in caveolar biogenesis. J Cell Sci 124, 2777-2785 .10.1242/jcs.084319
[12] Hinshaw, J.E., and Schmid, S.L. (1995). Dynamin self-assembles into rings suggesting a mechanism for coated vesicle budding. Nature 374, 190-192 .10.1038/374190a0
[13] Kessels, M.M., Dong, J., Leibig, W., Westermann, P., and Qualmann, B. (2006). Complexes of syndapin II with dynamin II promote vesicle formation at the trans-Golgi network. J Cell Sci 119, 1504-1516 .10.1242/jcs.02877
[14] Koch, D., Westermann, M., Kessels, M.M., and Qualmann, B. (2012). Ultrastructural freeze-fracture immunolabeling identifies plasma membrane-localized syndapin II as a crucial factor in shaping caveolae. Histochem Cell Biol 138, 215-230 .10.1007/s00418-012-0945-0
[15] Modregger, J., Ritter, B., Witter, B., Paulsson, M., and Plomann, M. (2000). All three PACSIN isoforms bind to endocytic proteins and inhibit endocytosis. J Cell Sci 113 Pt 24, 4511-4521 .
[16] Plomann, M., Lange, R., Vopper, G., Cremer, H., Heinlein, U.A., Scheff, S., Baldwin, S.A., Leitges, M., Cramer, M., Paulsson, M., . (1998). PACSIN, a brain protein that is upregulated upon differentiation into neuronal cells. Eur J Biochem 256, 201-211 .10.1046/j.1432-1327.1998.2560201.x
[17] Plomann, M., Wittmann, J.G., and Rudolph, M.G. (2010). A hinge in the distal end of the PACSIN 2 F-BAR domain may contribute to membrane-curvature sensing. J Mol Biol 400, 129-136 .10.1016/j.jmb.2010.05.008
[18] Qualmann, B., and Kelly, R.B. (2000). Syndapin isoforms participate in receptor-mediated endocytosis and actin organization. J Cell Biol 148, 1047-1062 .10.1083/jcb.148.5.1047
[19] Qualmann, B., Roos, J., DiGregorio, P.J., and Kelly, R.B. (1999). Syndapin I, a synaptic dynamin-binding protein that associates with the neural Wiskott-Aldrich syndrome protein. Mol Biol Cell 10, 501-513 .10.1091/mbc.10.2.501
[20] Ritter, B., Modregger, J., Paulsson, M., and Plomann, M. (1999). PACSIN 2, a novel member of the PACSIN family of cytoplasmic adapter proteins. FEBS Lett 454, 356-362 .10.1016/S0014-5793(99)00830-3
[21] Senju, Y., Itoh, Y., Takano, K., Hamada, S., and Suetsugu, S. (2011). Essential role of PACSIN2/syndapin-II in caveolae membrane sculpting. J Cell Sci 124, 2032-2040 .10.1242/jcs.086264
[22] Shimada, A., Takano, K., Shirouzu, M., Hanawa-Suetsugu, K., Terada, T., Toyooka, K., Umehara, T., Yamamoto, M., Yokoyama, S., and Suetsugu, S. (2010). Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II. FEBS Lett 584, 1111-1118 .10.1016/j.febslet.2010.02.058
[23] Stocco, G., Franca, R., Verzegnassi, F., Londero, M., Rabusin, M., and Decorti, G. (2012a). Multilocus genotypes of relevance for drug metabolizing enzymes and therapy with thiopurines in patients with acute lymphoblastic leukemia. Front Genet 3, 309.
[24] Stocco, G., Yang, W., Crews, K.R., Thierfelder, W.E., Decorti, G., Londero, M., Franca, R., Rabusin, M., Valsecchi, M.G., Pei, D., . (2012b). PACSIN2 polymorphism infl uences TPMT activity and mercaptopurine-related gastrointestinal toxicity. Human Mol Genet 21, 4793-4804 .10.1093/hmg/dds302
[25] Takei, K., Slepnev, V.I., Haucke, V., and De Camilli, P. (1999). Functional partnership between amphiphysin and dynamin in clathrinmediated endocytosis. Nat Cell Biol 1, 33-39 .
[26] Takei, Y., Harada, A., Takeda, S., Kobayashi, K., Terada, S., Noda, T., Takahashi, T., and Hirokawa, N. (1995). Synapsin I deficiency results in the structural change in the presynaptic terminals in the murine nervous system. J Cell Biol 131, 1789-1800 .10.1083/jcb.131.6.1789
[27] Tanaka-Takiguchi, Y., Itoh, T., Tsujita, K., Yamada, S., Yanagisawa, M., Fujiwara, K., Yamamoto, A., Ichikawa, M., and Takiguchi, K. (2013). Physicochemical analysis from real-time imaging of liposome tubulation reveals the characteristics of individual F-BAR domain proteins. Langmuir 29, 328-336 .10.1021/la303902q
[28] Wang, Q., Navarro, M.V., Peng, G., Molinelli, E., Goh, S.L., Judson, B.L., Rajashankar, K.R., and Sondermann, H. (2009). Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin. Proc Natl Acad Sci U S A 106, 12700-12705 . 10.1073/pnas.0902974106
[29] Z Otwinowski, W.M. (1997). Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276, 307-326 .10.1016/S0076-6879(97)76066-X
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