[1] Adams, P.D., Grosse-Kunstleve, R.W., Hung, L.W., Ioerger, T.R., McCoy, A.J., Moriarty, N.W., Read, R.J., Sacchettini, J.C., Sauter, N.K., and Terwilliger, T.C. (2002). PHENIX: building new software for automated crystallographic structure determination.
Acta Crystallogr D Biol Crystallogr 58, 1948-1954 12393927.
[2] Beigel, J.H., Farrar, J., Han, A.M., Hayden, F.G., Hyer, R., de Jong, M.D., Lochindarat, S., Nguyen, T.K., Nguyen, T.H., Tran, T.H.,
, and the
Writing Committee of the World Health Organization (WHO) Consultation on Human Influenza A/H5. (2005). Avian influenza A (H5N1) infection in humans.
N Engl J Med 353, 1374-1385 16192482.
[3] Belser, J.A., Lu, X., Maines, T.R., Smith, C., Li, Y., Donis, R.O., Katz, J.M., and Tumpey, T.M. (2007). Pathogenesis of avian influenza (H7) virus infection in mice and ferrets: enhanced virulence of Eurasian H7N7 viruses isolated from humans.
J Virol 81, 11139-11147 17686867.
[4] Belshe, R.B., Gruber, W.C., Mendelman, P.M., Cho, I., Reisinger, K., Block, S.L., Wittes, J., Iacuzio, D., Piedra, P., Treanor, J.,
(2000). Efficacy of vaccination with live attenuated, cold-adapted, trivalent, intranasal influenza virus vaccine against a variant (A/Sydney) not contained in the vaccine.
J Pediatr 136, 168-175 10657821.
[5] Bommakanti, G., Citron, M.P., Hepler, R.W., Callahan, C., Heidecker, G.J., Najar, T.A., Lu, X., Joyce, J.G., Shiver, J.W., Casimiro, D.R.,
(2010). Design of an HA2-based Escherichia coli expressed influenza immunogen that protects mice from pathogenic challenge.
Proc Natl Acad Sci U S A 107, 13701-13706 20615991.
[6] Caton, A.J., Brownlee, G.G., Yewdell, J.W., and Gerhard, W. (1982). The antigenic structure of the influenza virus A/PR/8/34 hemagglutinin (H1 subtype).
Cell 31, 417-427 6186384.
[7] Claas, E.C., Osterhaus, A.D., van Beek, R., De Jong, J.C., Rimmelzwaan, G.F., Senne, D.A., Krauss, S., Shortridge, K.F., and Webster, R.G. (1998). Human influenza A H5N1 virus related to a highly pathogenic avian influenza virus.
Lancet 351, 472-477 9482438.
[8]
Collaborative Computational Project, Number 4. (1994). The CCP4 suite: programs for protein crystallography.
Acta Crystallogr D Biol Crystallogr 50, 760-763 15299374.
[9] Corti, D., Voss, J., Gamblin, S.J., Codoni, G., Macagno, A., Jarrossay, D., Vachieri, S.G., Pinna, D., Minola, A., Vanzetta, F.,
(2011). A neutralizing antibody selected from plasma cells that binds to group 1 and group 2 influenza A hemagglutinins.
Science 333, 850-856 21798894.
[10] Das, K., Aramini, J.M., Ma, L.C., Krug, R.M., and Arnold, E. (2010). Structures of influenza A proteins and insights into antiviral drug targets.
Nat Struct Mol Biol 17, 530-538 20383144.
[11] DuBois, R.M., Aguilar-Ya?ez, J.M., Mendoza-Ochoa, G.I., Oropeza-Almazán, Y., Schultz-Cherry, S., Alvarez, M.M., White, S.W., and Russell, C.J. (2011a). The receptor-binding domain of influenza virus hemagglutinin produced in Escherichia coli folds into its native, immunogenic structure.
J Virol 85, 865-872 21068239.
[12] DuBois, R.M., Aguilar-Ya?ez, J.M., Mendoza-Ochoa, G.I., Oropeza-Almazán, Y., Schultz-Cherry, S., Alvarez, M.M., White, S.W., and Russell, C.J. (2011b). The receptor-binding domain of influenza virus hemagglutinin produced in Escherichia coli folds into its native, immunogenic structure.
J Virol 85, 865-872 21068239.
[13] Ekiert, D.C., Bhabha, G., Elsliger, M.A., Friesen, R.H., Jongeneelen, M., Throsby, M., Goudsmit, J., and Wilson, I.A. (2009). Antibody recognition of a highly conserved influenza virus epitope.
Science 324, 246-251 19251591.
[14] Ekiert, D.C., Friesen, R.H., Bhabha, G., Kwaks, T., Jongeneelen, M., Yu, W., Ophorst, C., Cox, F., Korse, H.J., Brandenburg, B.,
(2011). A highly conserved neutralizing epitope on group 2 influenza A viruses.
Science 333, 843-850 21737702.
[15] Emsley, P., and Cowtan, K. (2004). Coot: model-building tools for molecular graphics.
Acta Crystallogr D Biol Crystallogr 60, 2126-2132 15572765.
[16] Fields, B.N., Knipe, D.M., and Howley, P.M. (2007). Fields virology, 5th ed.
Philadelphia:
Wolters Kluwer Health/Lippincott Williams & Wilkins.
[17] Furuya, Y., Regner, M., Lobigs, M., Koskinen, A., Müllbacher, A., and Alsharifi, M. (2010). Effect of inactivation method on the cross-protective immunity induced by whole ‘killed’ influenza A viruses and commercial vaccine preparations.
J Gen Virol 91, 1450-1460 20147516.
[18] Gamblin, S.J., Haire, L.F., Russell, R.J., Stevens, D.J., Xiao, B., Ha, Y., Vasisht, N., Steinhauer, D.A., Daniels, R.S., Elliot, A.,
(2004). The structure and receptor binding properties of the 1918 influenza hemagglutinin.
Science 303, 1838-1842 14764886.
[19] Guan, Y., Vijaykrishna, D., Bahl, J., Zhu, H., Wang, J., and Smith, G.J. (2010). The emergence of pandemic influenza viruses.
Protein Cell 1, 9-13 21203993.
[20] Ha, Y., Stevens, D.J., Skehel, J.J., and Wiley, D.C. (2002). H5 avian and H9 swine influenza virus haemagglutinin structures: possible origin of influenza subtypes.
EMBO J 21, 865-875 11867515.
[21] Igarashi, M., Ito, K., Yoshida, R., Tomabechi, D., Kida, H., and Takada, A. (2010). Predicting the antigenic structure of the pandemic (H1N1) 2009 influenza virus hemagglutinin.
PLoS One 5, e855320049332.
[22] Khurana, S., Larkin, C., Verma, S., Joshi, M.B., Fontana, J., Steven, A.C., King, L.R., Manischewitz, J., McCormick, W., Gupta, R.K.,
(2011). Recombinant HA1 produced in E. coli forms functional oligomers and generates strain-specific SRID potency antibodies for pandemic influenza vaccines.
Vaccine 29, 5657-5665 21704111.
[23] Khurana, S., Verma, S., Verma, N., Crevar, C.J., Carter, D.M., Manischewitz, J., King, L.R., Ross, T.M., and Golding, H. (2010). Properly folded bacterially expressed H1N1 hemagglutinin globular head and ectodomain vaccines protect ferrets against H1N1 pandemic influenza virus.
PLoS One 5, e1154820634959.
[24] Kilbourne, E.D. (2006). Influenza pandemics of the 20th century.
Emerg Infect Dis 12, 9-14 16494710.
[25] Kubo, Y., Yokoyama, M., Yoshii, H., Mitani, C., Tominaga, C., Tanaka, Y., Sato, H., and Yamamoto, N. (2007). Inhibitory role of CXCR4 glycan in CD4-independent X4-tropic human immunodeficiency virus type 1 infection and its abrogation in CD4-dependent infection.
J Gen Virol 88, 3139-3144 17947541.
[26] Kurtz, J., Manvell, R.J., and Banks, J. (1996). Avian influenza virus isolated from a woman with conjunctivitis.
Lancet 348, 901-902 8826845.
[27] Laskowski, R.A., MacArthur, M.W., Moss, D.S., and Thornton, J.M. (1993). PROCHECK: A program to check the stereochemical quality of protein structures.
J Appl Cryst 26, 283-291 .
[28] Lin, Y.P., Shaw, M., Gregory, V., Cameron, K., Lim, W., Klimov, A., Subbarao, K., Guan, Y., Krauss, S., Shortridge, K.,
(2000). Avian-to-human transmission of H9N2 subtype influenza A viruses: relationship between H9N2 and H5N1 human isolates.
Proc Natl Acad Sci U S A 97, 9654-9658 10920197.
[29] Lipsitch, M., Cohen, T., Murray, M., and Levin, B.R. (2007). Antiviral resistance and the control of pandemic influenza.
PLoS Med 4, e1517253900.
[30] Meijer, A., Bosman, A., van de Kamp, E.E.H.M., Wilbrink, B., Du Ry van Beest Holle, M., and Koopmans, M. (2006). Measurement of antibodies to avian influenza virus A(H7N7) in humans by hemagglutination inhibition test.
J Virol Methods 132, 113-120 16271401.
[31] Murshudov, G.N., Vagin, A.A., and Dodson, E.J. (1997). Refinement of macromolecular structures by the maximum-likelihood method.
Acta Crystallogr D Biol Crystallogr 53, 240-255 15299926.
[32] Neumann, G., Noda, T., and Kawaoka, Y. (2009). Emergence and pandemic potential of swine-origin H1N1 influenza virus.
Nature 459, 931-939 19525932.
[33] Otwinowski, Z., and Minor, W. (1997). Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol 276, 307-326 .
[34] Read, R.J. (2001). Pushing the boundaries of molecular replacement with maximum likelihood.
Acta Crystallogr D Biol Crystallogr 57, 1373-1382 11567148.
[35] Russell, R.J., Gamblin, S.J., Haire, L.F., Stevens, D.J., Xiao, B., Ha, Y., and Skehel, J.J. (2004). H1 and H7 influenza haemagglutinin structures extend a structural classification of haemagglutinin subtypes.
Virology 325, 287-296 15246268.
[36] Russell, R.J., Kerry, P.S., Stevens, D.J., Steinhauer, D.A., Martin, S.R., Gamblin, S.J., and Skehel, J.J. (2008). Structure of influenza hemagglutinin in complex with an inhibitor of membrane fusion.
Proc Natl Acad Sci U S A 105, 17736-17741 19004788.
[37] Skehel, J.J., and Wiley, D.C. (2000). Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin.
Annu Rev Biochem 69, 531-569 10966468.
[38] Stevens, J., Blixt, O., Tumpey, T.M., Taubenberger, J.K., Paulson, J.C., and Wilson, I.A. (2006). Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus.
Science 312, 404-410 16543414.
[39] Subbarao, K., Klimov, A., Katz, J., Regnery, H., Lim, W., Hall, H., Perdue, M., Swayne, D., Bender, C., Huang, J.,
(1998). Characterization of an avian influenza A (H5N1) virus isolated from a child with a fatal respiratory illness.
Science 279, 393-396 9430591.
[40] Sun, Y., Shi, Y., Zhang, W., Li, Q., Liu, D., Vavricka, C., Yan, J., and Gao, G.F. (2010). In silico characterization of the functional and structural modules of the hemagglutinin protein from the swine-origin influenza virus A (H1N1)-2009.
Sci China Life Sci 53, 633-642 20602265.
[41] Tran, T.H., Nguyen, T.L., Nguyen, T.D., Luong, T.S., Pham, P.M., Nguyen, V.C., Pham, T.S., Vo, C.D., Le, T.Q., Ngo, T.T.,
, and the
World Health Organization International Avian Influenza Investigative Team. (2004). Avian influenza A (H5N1) in 10 patients in Vietnam.
N Engl J Med 350, 1179-1188 14985470.
[42] Vavricka, C.J., Li, Q., Wu, Y., Qi, J., Wang, M., Liu, Y., Gao, F., Liu, J., Feng, E., He, J.,
(2011). Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition.
PLoS Pathog 7, e100224922028647.
[43] Vitale, F., Russo Alesi, D., Bonura, F., Di Benedetto, M.A., Mammina, C., and Romano, N. (1991). Change in size of the envelope glycoprotein of a human immunodeficiency virus 1 (HIV 1) strain.
Microbiologica 14, 15-20 2067412.
[44] Wang, T.T., Tan, G.S., Hai, R., Pica, N., Ngai, L., Ekiert, D.C., Wilson, I.A., García-Sastre, A., Moran, T.M., and Palese, P. (2010). Vaccination with a synthetic peptide from the influenza virus hemagglutinin provides protection against distinct viral subtypes.
Proc Natl Acad Sci U S A 107, 18979-18984 20956293.
[45] Wilson, I.A., Skehel, J.J., and Wiley, D.C. (1981). Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution.
Nature 289, 366-373 7464906.
[46] Wood, J.M., and Robertson, J.S. (2004). From lethal virus to life-saving vaccine: developing inactivated vaccines for pandemic influenza.
Nat Rev Microbiol 2, 842-847 15378048.
[47] Xu, R., McBride, R., Paulson, J.C., Basler, C.F., and Wilson, I.A. (2010). Structure, receptor binding, and antigenicity of influenza virus hemagglutinins from the 1957 H2N2 pandemic.
J Virol 84, 1715-1721 20007271.
[48] Yang, Y., Sugimoto, J.D., Halloran, M.E., Basta, N.E., Chao, D.L., Matrajt, L., Potter, G., Kenah, E., and Longini, I.M. Jr. (2009). The transmissibility and control of pandemic influenza A (H1N1) virus.
Science 326, 729-733 19745114.
[49] Zhang, W., Qi, J., Shi, Y., Li, Q., Gao, F., Sun, Y., Lu, X., Lu, Q., Vavricka, C.J., Liu, D.,
(2010). Crystal structure of the swine-origin A (H1N1)-2009 influenza A virus hemagglutinin (HA) reveals similar antigenicity to that of the 1918 pandemic virus.
Protein Cell 1, 459-467 21203961.